1 usage of rest-gca zang zhenxiang school of science, beijing jiaotong university state key...

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1 Usage of REST- Usage of REST- GCA GCA Zang Zhenxiang Zang Zhenxiang School of Science, Beijing jiaotong university School of Science, Beijing jiaotong university State Key Laboratory of Cognitive Neuroscience and State Key Laboratory of Cognitive Neuroscience and Learning, Beijing normal university Learning, Beijing normal university [email protected]

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Page 1: 1 Usage of REST-GCA Zang Zhenxiang School of Science, Beijing jiaotong university State Key Laboratory of Cognitive Neuroscience and Learning, Beijing

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Usage of REST-Usage of REST-GCAGCA

Zang ZhenxiangZang Zhenxiang

School of Science, Beijing jiaotong universitySchool of Science, Beijing jiaotong universityState Key Laboratory of Cognitive Neuroscience and Learning, Beijing State Key Laboratory of Cognitive Neuroscience and Learning, Beijing

normal universitynormal university

[email protected]

Page 2: 1 Usage of REST-GCA Zang Zhenxiang School of Science, Beijing jiaotong university State Key Laboratory of Cognitive Neuroscience and Learning, Beijing

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OutlineOutline

Set data directorySet data directory Set ROISet ROI Mask selectionMask selection Set orderSet order Set covariates (optional)Set covariates (optional) Set output directorySet output directory

Page 3: 1 Usage of REST-GCA Zang Zhenxiang School of Science, Beijing jiaotong university State Key Laboratory of Cognitive Neuroscience and Learning, Beijing

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Set directorySet directory

Click the right button to add a Click the right button to add a directory:directory:

Page 4: 1 Usage of REST-GCA Zang Zhenxiang School of Science, Beijing jiaotong university State Key Laboratory of Cognitive Neuroscience and Learning, Beijing

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Set directorySet directory Add sub-foldersAdd sub-folders

for batch analysis:for batch analysis:

Page 5: 1 Usage of REST-GCA Zang Zhenxiang School of Science, Beijing jiaotong university State Key Laboratory of Cognitive Neuroscience and Learning, Beijing

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Set directorySet directory

Remove the selected directory:Remove the selected directory:

Page 6: 1 Usage of REST-GCA Zang Zhenxiang School of Science, Beijing jiaotong university State Key Laboratory of Cognitive Neuroscience and Learning, Beijing

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Set directorySet directory

Remove all the directories:Remove all the directories:

Page 7: 1 Usage of REST-GCA Zang Zhenxiang School of Science, Beijing jiaotong university State Key Laboratory of Cognitive Neuroscience and Learning, Beijing

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Set ROI

Voxel-wise

ROI-wise

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Voxel-wiseVoxel-wise

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Voxel-wiseVoxel-wise

Please see REST-sliceviewer

for details.The text file must contain only one column. Each line represents the value of a time point.

Page 10: 1 Usage of REST-GCA Zang Zhenxiang School of Science, Beijing jiaotong university State Key Laboratory of Cognitive Neuroscience and Learning, Beijing

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Set ROI

Voxel-wise

ROI-wise

Page 11: 1 Usage of REST-GCA Zang Zhenxiang School of Science, Beijing jiaotong university State Key Laboratory of Cognitive Neuroscience and Learning, Beijing

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ROI-wise (between two ROI-wise (between two ROIs)ROIs)

Set the first ROI:Set the first ROI:

Page 12: 1 Usage of REST-GCA Zang Zhenxiang School of Science, Beijing jiaotong university State Key Laboratory of Cognitive Neuroscience and Learning, Beijing

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ROI-wiseROI-wise

Please see REST-sliceviewer

for details.The text file must contain only one column. Each line represents the value of a time point.

Page 13: 1 Usage of REST-GCA Zang Zhenxiang School of Science, Beijing jiaotong university State Key Laboratory of Cognitive Neuroscience and Learning, Beijing

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ROI-wise (between two ROI-wise (between two ROIs)ROIs)

Set the second ROI:Set the second ROI:

Page 14: 1 Usage of REST-GCA Zang Zhenxiang School of Science, Beijing jiaotong university State Key Laboratory of Cognitive Neuroscience and Learning, Beijing

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ROI-wiseROI-wise

Please see REST-sliceviewer

for details.The text file must contain only one column. Each line represents the value of a time point.

Page 15: 1 Usage of REST-GCA Zang Zhenxiang School of Science, Beijing jiaotong university State Key Laboratory of Cognitive Neuroscience and Learning, Beijing

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Mask selectionMask selection

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User defined maskUser defined mask

Select yourSelect your

mask:mask:

Page 17: 1 Usage of REST-GCA Zang Zhenxiang School of Science, Beijing jiaotong university State Key Laboratory of Cognitive Neuroscience and Learning, Beijing

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Order and algorithmOrder and algorithm Set order:Set order:

Choose the algorithm:Choose the algorithm:

or

Page 18: 1 Usage of REST-GCA Zang Zhenxiang School of Science, Beijing jiaotong university State Key Laboratory of Cognitive Neuroscience and Learning, Beijing

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Add covariatesAdd covariates

Covariates are optionalCovariates are optional

→The covariates text file may contain several columns, each respresenting a covariate.

Page 19: 1 Usage of REST-GCA Zang Zhenxiang School of Science, Beijing jiaotong university State Key Laboratory of Cognitive Neuroscience and Learning, Beijing

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Set output directorySet output directory

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Click ‘Compute’ to start

Page 21: 1 Usage of REST-GCA Zang Zhenxiang School of Science, Beijing jiaotong university State Key Laboratory of Cognitive Neuroscience and Learning, Beijing

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Acknowledgment Acknowledgment

Many thanks to:Many thanks to:

Dong ZhangyeDong Zhangye

Yan ChaoganYan Chaogan

Huang JianHuang Jian

Zang YufengZang Yufeng

And all the group members!

Page 22: 1 Usage of REST-GCA Zang Zhenxiang School of Science, Beijing jiaotong university State Key Laboratory of Cognitive Neuroscience and Learning, Beijing

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Thanks for using REST and Thanks for using REST and REST-GCA!REST-GCA!