Translational BioinformaticsWellcome Genome Campus

UK12-13 June 2017

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Bio-Entity Finder and Relation Extraction

Biomedical databasesText mining

http://ibi.imim.es/befree/

http://www.psygenet.org/

Source Genes Diseases Associations

Curated 8,948 13,074 130,821

Animal Models 2,300 1,943 6,455

Text mining 16,119 12,604 448,732

All 17,074 20,370 561,119

Source Variants Diseases Associations

Curated 66,903 6,388 83,582

Text mining 24,455 4,432 57,331

All 83,002 9,169 135,588

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Gene Number of diseases

DisGeNET score DSI Number of

PMIDsNumber of

SNPs

CFTR 308 1 0,948 0,422 1596TGFB1 902 0,433 1 0,314 17DCTN4 83 0,401 1 0,555 2SCNN1B 69 0,293 1 0,573 13SCNN1G 65 0,212 1 0,579 6SCNN1A 64 0,207 0,833 0,581 9TNFRSF1A 318 0,205 1 0,419 1

CLCA4 18 0,204 1 0,709 4STX1A 54 0,200 1 0,598 1

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http://ibi.imim.es/