2009 computing in science and engineering author index · 2009 computing in science and engineering...

2009 Computing in Science and Engineering Author Index

AUTHOR INDEX

A

Alexanderian, Alen, seeMüller, Daniel.

Almgren, Ann S., , John B. Bell, Andy Nonaka, and Michael Zingale, "A New Low Mach Number Approach in Astrophysics," Mar./Apr., pp. 24–33.

Amadigwe, Desmond E., seeMüller, Daniel.

Amador-Bedolla, Carlos, see Olivares-Amaya, Roberto.

Anderson, Erik, see Tohline, Joel E.

Arns, Christoph H., seeMadadi, Mahyar.

B

Bai, Mingze, see Tang, Hong.

Bayoumi, Amr, , Michael Chu, Yasser Hanafy, Patricia Harrell, and Gamal Refai-Ahmed, "Scientific and Engineering Computing Using ATI Stream Technology," Nov./Dec., pp. 92–97.

Beichl, Isabel, "Begin at the Beginning," Jan./Feb., pp. 3.

Beichl, Isabel, , and Francis Sullivan, "Cut It Out!," May/June, pp. 74–79.

Beichl, Isabel, "We'll Take Care of All Your Problems," Mar./Apr., pp. 3–4.

Beichl, Isabel, "Where the Rubber Meets the Road," Sep./Oct., pp. 3.

Bell, John B., see Almgren, Ann S.

Belletti, Francesco, , Maria Cotallo, Andrés Cruz, Luis Antonio Fernandez, Antonio Gordillo-Guerrero, Marco Guidetti, Andrea Maiorano, Filippo Mantovani, Enzo Marinari, Victor Martin-Mayor, Antonio Muñoz-Sudupe, Denis Navarro, Giorgio Parisi, Sergio Perez-Gaviro, Mauro Rossi, Juan Jesús Ruiz-Lorenzo, Sebastiano Fabio Schifano, Daniele Sciretti, Alfonso Tarancon, Raffaele (lele) Tripiccione, José Luis Velasco, David Yllanes, and Gianpaolo Zanier, "Janus: An FPGA-

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Based System for High-Performance Scientific Computing," Jan./Feb., pp. 48–58.

Benger, Werner, "On Safari in the File Format Jungle—Why Can't You Visualize My Data?," Nov./Dec., pp. 98–102.

Bliss, Nadya, seeMullen, Julie.

Bond, Robert, seeMullen, Julie.

Boyle, John, see Killcoyne, Sarah.

Bremer, Peer-Timo, see Gyulassy, Attila.

Bungartz, Hans-Joachim, , Donald Estep, Ulrich Rüde, and Peter Turner, "Computational Science and Engineering Education: SIAM's Perspective," Nov./Dec., pp. 5–11.

C

Calder, Alan C., , and Richard T. Kouzes, "Advances in Computational Astrophysics," Mar./Apr., pp. 15–17.

Caplins, Benjamin W., seeMüller, Daniel.

Carver, Jeffrey C., "First International Workshop on Software Engineering for Computational Science & Engineering," Mar./Apr., pp. 7–11.

Carver, Jeffrey C., "Report: The Second International Workshop on Software Engineering for CSE," Nov./Dec., pp. 14–19.

Castillo, Jose E., see Landau, Rubin.

Chan, Ernie, see Zee, Field G. Van.

Chaudhury, S. Raj, see Knipp, Peter A.





Chen, Jim X., "A Personal Reflection," July/Aug., pp. 3.

Chen, Jim X., see Xie, You-Zhou.

Chen, Li-Fen, see Xie, You-Zhou.

Chonacky, Norman, "Computation in Modern Physics," July/Aug., pp. 6–7.

Chonacky, Norman, "A Modern Tower of Babel," May/June, pp. 80.

Chu, Michael, see Bayoumi, Amr.

Claerbout, Jon F., see Fomel, Sergey.

Cohen, Jonathan, "Graph Twiddling in a MapReduce World," July/Aug., pp. 29–41.

Cohen, Jonathan, , and Michael Garland, "Solving Computational Problems with GPU Computing," Sep./Oct., pp. 58–63.

Comba, João L.D., see Dietrich, Carlos A.

Cotallo, Maria, see Belletti, Francesco.

Cruz, Andrés, see Belletti, Francesco.

D

Dai, Pei-Dong, see Xie, You-Zhou.

Day, Charles, ""Compute? No, Mr. Bond, I Expect You to Die!"," Mar./Apr., pp. 88.

Day, Charles, "Advice from Uncle Charles," Sep./Oct., pp. 96.

Day, Charles, "Lessons from Little Dorrit," Nov./Dec., pp. 104.

Day, Charles, "Vets 1, Docs 1," July/Aug., pp. 96.

Dietrich, Carlos A., , Carlos E. Scheidegger, João L.D. Comba, Luciana P. Nedel, and Cláudio T. Silva, "Marching Cubes without Skinny Triangles," Mar./Apr., pp. 82–87.



Dimitoglou, George, seeMüller, Daniel.

Donoho, David L., , Arian Maleki, Inam Ur Rahman, Morteza Shahram, and Victoria Stodden, "Reproducible Research in Computational Harmonic Analysis," Jan./Feb., pp. 8–18.

Dorland, William, see Stantchev, George.

Dormido, Sebastián, see Vargas, Héctor.

Dou, Yusheng, see Tang, Hong.

Droegemeier, Kelvin, see Dunning, Thom H.

Dunning, Thom H., "Guest Editor's Introduction: Science and Engineering on Petascale Computers," Sep./Oct., pp. 7–9.

Dunning, Thom H., , Klaus Schulten, Jeroen Tromp, Jeremiah P. Ostriker, Kelvin Droegemeier, Ming Xue, and Paul Fussell, "Science and Engineering in the Petascale Era," Sep./Oct., pp. 28–37.

Dura, James, see Vesperini, Enrico.

E

Easterbrook, Steve M., , and Timothy C. Johns, "Engineering the Software for Understanding Climate Change," Nov./Dec., pp. 65–74.

Eckel, Sandrah P., see Peng, Roger D.

Eddins, Steven L., "Automated Software Testing for Matlab," Nov./Dec., pp. 48–55.

Engelhardt, Larry, "Descriptions and Comparisons of Monte Carlo Algorithms," Nov./Dec., pp. 103.

Esquembre, Francisco, see Vargas, Héctor.

Estep, Donald, see Bungartz, Hans-Joachim.

Even, Wesley, see Tohline, Joel E.



F

Falcou, Joel, "Parallel Programming with Skeletons," May/June, pp. 58–63.

Faulk, Stuart, , Eugene Loh, Michael L. Van De Vanter, Susan Squires, and Lawrence G. Votta, "Scientific Computing's Productivity Gridlock: How Software Engineering Can Help," Nov./Dec., pp. 30–39.

Fernandez, Luis Antonio, see Belletti, Francesco.

Fleck, Bernhard, seeMüller, Daniel.

Fomel, Sergey, , and Jon F. Claerbout, "Guest Editors' Introduction: Reproducible Research," Jan./Feb., pp. 5–7.

Fussell, Paul, see Dunning, Thom H.

G

Garland, Michael, see Cohen, Jonathan.

Ge, Jinghya, see Tohline, Joel E.

Geijn, Robert A. van de, see Zee, Field G. Van.

Gillet, Denis, see Vargas, Héctor.

Glotzer, Sharon C., , Bob Panoff, and Scott Lathrop, "Challenges and Opportunities in Preparing Students for Petascale Computational Science and Engineering," Sep./Oct., pp. 22–27.

Goldberg, David M., see Vesperini, Enrico.

Gordillo-Guerrero, Antonio, see Belletti, Francesco.

Gray, Michael A., "Getting Started with GPU Programming," July/Aug., pp. 61–64.

Gropp, William D., "Software for Petascale Computing Systems," Sep./Oct., pp. 17–21.

Guidetti, Marco, see Belletti, Francesco.



Guyer, Jonathan E., , Daniel Wheeler, and James A. Warren, "FiPy: Partial Differential Equations with Python," May/June, pp. 6–15.

Gyulassy, Attila, , Luis Gustavo Nonato, Peer-Timo Bremer, Claudio Silva, and Valerio Pascucci, "Robust Topology-Based Multiscale Analysis of Scientific Data," Sep./Oct., pp. 88–95.

H

Hanafy, Yasser, see Bayoumi, Amr.

Harrell, Patricia, see Bayoumi, Amr.

Henning, Paul, , and Andrew B. White Jr., "Trailblazing with Roadrunner," July/Aug., pp. 91–95.

Hinsen, Konrad, , Konstantin Läufer, and George K. Thiruvathukal, "Essential Tools: Version Control Systems," Nov./Dec., pp. 84–91.

Hinsen, Konrad, "The Promises of Functional Programming," July/Aug., pp. 86–90.

Hook, Daniel, see Kelly, Diane.

Hook, Daniel, , and Diane Kelly, "Mutation Sensitivity Testing," Nov./Dec., pp. 40–47.

Hughitt, V. Keith, seeMüller, Daniel.

Hwu, Wen-Mei, , Christopher Rodrigues, Shane Ryoo, and John Stratton, "Compute Unified Device Architecture Application Suitability," May/June, pp. 16–26.

I

Ireland, Jack, seeMüller, Daniel.

J

Johns, Timothy C., see Easterbrook, Steve M.

Johnson, James L., "SQL in the Clouds," July/Aug., pp. 12–28.

Jones, Anthony C., seeMadadi, Mahyar.



Jones, Douglas, see Vesperini, Enrico.

Juba, Derek, see Stantchev, George.

K

Kelly, Diane, , Daniel Hook, and Rebecca Sanders, "Five Recommended Practices for Computational Scientists Who Write Software," Sep./Oct., pp. 48–53.

Kelly, Diane, see Hook, Daniel.

Kepner, Jeremy, seeMullen, Julie.

Killcoyne, Sarah, , and John Boyle, "Managing Chaos: Lessons Learned Developing Software in the Life Sciences," Nov./Dec., pp. 20–29.

Kim, Hahn, seeMullen, Julie.

Kindratenko, Volodymyr, "Novel Computing Architectures," May/June, pp. 54–57.

Knackstedt, Mark A., seeMadadi, Mahyar.

Knipp, Peter A., , and S. Raj Chaudhury, "Postprocessing in Automated Grading Systems, Part 1,"May/June, pp. 64–67.

Knipp, Peter A., , and S. Raj Chaudhury, "Postprocessing in Automated Grading Systems, Part 2,"July/Aug., pp. 82–85.

Knipp, Peter A., , and S. Raj Chaudhury, "Postprocessing in Automated Grading Systems, Part 3,"Sep./Oct., pp. 64–67.

Kogge, Peter M., "The Challenges of Petascale Architectures," Sep./Oct., pp. 10–16.

Kouzes, Richard T., see Calder, Alan C.

L

Läufer, Konstantin, see Hinsen, Konrad.



Läufer, Konstantin, , and George K. Thiruvathukal, "The Promises of Typed, Pure, and Lazy Functional Programming: Part II," Sep./Oct., pp. 68–75.

Läufer, Konstantin, , George K. Thiruvathukal, Ryohei Nishimura, and Carlos Ramírez Martínez-Eiroa, "Putting a Slug to Work," Mar./Apr., pp. 62–68.

Landau, Rubin, , and Jose E. Castillo, "Computational Science Research and Graduate Studies at San Diego State University," July/Aug., pp. 5.

Lathrop, Scott, see Glotzer, Sharon C.

Lester, Jr., William A., see Olivares-Amaya, Roberto.

LeVeque, Randall J., "Python Tools for Reproducible Research on Hyperbolic Problems," Jan./Feb., pp. 19–27.

Likothanassis, Spiridon, see Papadimitriou, Stergios.

Loh, Eugene, see Faulk, Stuart.

Luke, Edward, see Zhang, Yang.

Lumsdaine, Andrew, seeWilson, Greg.

M

Mücke, Ernst, "Quickhull: Computing Convex Hulls Quickly," Sep./Oct., pp. 54–57.

Müller, Daniel, , Bernhard Fleck, George Dimitoglou, Benjamin W. Caplins, Desmond E. Amadigwe, Juan Pablo García Ortiz, Benjamin Wamsler, Alen Alexanderian, V. Keith Hughitt, and Jack Ireland, "JHelioviewer: Visualizing Large Sets of Solar Images Using JPEG 2000," Sep./Oct., pp. 38–47.

Ma, Jianwei, , and Gerlind Plonka, "Computing with Curvelets: From Image Processing to Turbulent Flows," Mar./Apr., pp. 72–80.

Madadi, Mahyar, , Anthony C. Jones, Christoph H. Arns, and Mark A. Knackstedt, "3D Imaging and Simulation of Elastic Properties of Porous Materials," July/Aug., pp. 65–73.

Maiorano, Andrea, see Belletti, Francesco.



Maleki, Arian, see Donoho, David L.

Mantovani, Filippo, see Belletti, Francesco.

Marinari, Enzo, see Belletti, Francesco.

Martínez-Eiroa, Carlos Ramírez, see Läufer, Konstantin.

Martin-Mayor, Victor, see Belletti, Francesco.

Mavroudi, Seferina, see Papadimitriou, Stergios.

McMail, Thomas C., "Next-Generation Research and Breakthrough Innovation," Nov./Dec., pp. 76–84.

McMillan, Stephen L.W., see Vesperini, Enrico.

Muñoz-Sudupe, Antonio, see Belletti, Francesco.

Mullen, Julie, , Nadya Bliss, Robert Bond, Jeremy Kepner, Hahn Kim, and Albert Reuther, "High-Productivity Software Development with pMatlab," Jan./Feb., pp. 75–79.

Myra, Eric S., , F. Douglas Swesty, and Dennis C. Smolarski, "Stellar Core Collapse: A Case Study in the Design of Numerical Algorithms for Scalable Radiation Hydrodynamics," Mar./Apr., pp. 34–44.

N

Navarro, Denis, see Belletti, Francesco.

Nedel, Luciana P., see Dietrich, Carlos A.

Nishimura, Ryohei, see Läufer, Konstantin.

Nonaka, Andy, see Almgren, Ann S.

Nonato, Luis Gustavo, see Gyulassy, Attila.

O



Olivares-Amaya, Roberto, , Romelia Salomón-Ferrer, William A. Lester Jr., and Carlos Amador-Bedolla, "Creating a GUI for Zori, a Quantum Monte Carlo Program," Jan./Feb., pp. 41–47.

Orkoulas, Gerassimos, "An Overview of Monte Carlo Methods for Fluid Simulation," Sep./Oct., pp. 76–87.

Ortiz, Juan Pablo García, seeMüller, Daniel.

Ostriker, Jeremiah P., see Dunning, Thom H.

P

Panoff, Bob, see Glotzer, Sharon C.

Papadimitriou, Stergios, , Konstantinos Terzidis, Seferina Mavroudi, and Spiridon Likothanassis, "Scientific Scripting for the Java Platform with jLab," July/Aug., pp. 50–60.

Parisi, Giorgio, see Belletti, Francesco.

Pascucci, Valerio, see Gyulassy, Attila.

Peng, Roger D., , and Sandrah P. Eckel, "Distributed Reproducible Research Using Cached Computations," Jan./Feb., pp. 28–34.

Perez-Gaviro, Sergio, see Belletti, Francesco.

Plonka, Gerlind, seeMa, Jianwei.

Post, Douglass, "The Promise of Science-Based Computational Engineering," May/June, pp. 3–4.

Press, William H., "That Perfect Algorithm for Any Occasion," Sep./Oct., pp. 5–6.

Q

Quintana-Ortí, Enrique S., see Zee, Field G. Van.

Quintana-Ortí, Gregorio, see Zee, Field G. Van.



R

Rüde, Ulrich, see Bungartz, Hans-Joachim.

Rahman, Inam Ur, see Donoho, David L.

Refai-Ahmed, Gamal, see Bayoumi, Amr.

Reuther, Albert, seeMullen, Julie.

Rodrigues, Christopher, see Hwu, Wen-Mei.

Rossi, Mauro, see Belletti, Francesco.

Ruiz-Lorenzo, Juan Jesús, see Belletti, Francesco.

Ryoo, Shane, see Hwu, Wen-Mei.

S

Sánchez-Moreno, José, see Vargas, Héctor.

Saadatfar, Mohammad, "Computer Simulation of Granular Materials," Jan./Feb., pp. 66–74.

Salomón-Ferrer, Romelia, see Olivares-Amaya, Roberto.

Salzmann, Christophe, see Vargas, Héctor.

Sanders, Rebecca, see Kelly, Diane.

Scheidegger, Carlos E., see Dietrich, Carlos A.

Schifano, Sebastiano Fabio, see Belletti, Francesco.

Schillaci, Michael Jay, "Total Tomography," Mar./Apr., pp. 12–13.

Schulten, Klaus, see Dunning, Thom H.

Sciretti, Daniele, see Belletti, Francesco.



Shahram, Morteza, see Donoho, David L.

Sich, Mark, "Interactive Holography: Pursuit of a Dream," Jan./Feb., pp. 62–65.

Silva, Cláudio T., see Dietrich, Carlos A.

Silva, Claudio, see Gyulassy, Attila.

Smolarski, Dennis C., seeMyra, Eric S.

Squires, Susan, see Faulk, Stuart.

Stantchev, George, , Derek Juba, William Dorland, and Amitabh Varshney, "Using Graphics Processors for High-Performance Computation and Visualization of Plasma Turbulence," Mar./Apr., pp. 52–59.

Stark, Dylan, see Sterling, Thomas.

Sterling, Thomas, , and Dylan Stark, "A High-Performance Computing Forecast: Partly Cloudy,"July/Aug., pp. 42–49.

Stodden, Victoria, "The Legal Framework for Reproducible Scientific Research: Licensing and Copyright," Jan./Feb., pp. 35–40.

Stodden, Victoria, see Donoho, David L.

Stratton, John, see Hwu, Wen-Mei.

Sullivan, Francis, see Beichl, Isabel.

Sullivan, Francis, "Guest Editor's Introduction: Cloud Computing for the Sciences," July/Aug., pp. 10–11.

Sullivan, Francis, "That Was Then, This Is Now," Jan./Feb., pp. 80.

Swesty, F. Douglas, seeMyra, Eric S.

T

Tang, Hong, , Yusheng Dou, and Mingze Bai, "Molecular Response to Ultrashort Laser Pulses,"



May/June, pp. 47–53.

Tarancon, Alfonso, see Belletti, Francesco.

Terzidis, Konstantinos, see Papadimitriou, Stergios.

Thiruvathukal, George K., "Computational Thinking and Doing," Nov./Dec., pp. 4.

Thiruvathukal, George K., see Hinsen, Konrad.

Thiruvathukal, George K., "Introducing Computing Now," July/Aug., pp. 8–10.

Thiruvathukal, George K., see Läufer, Konstantin.

Thiruvathukal, George K., see Läufer, Konstantin.

Tofan, Daniel, "Drawing Chemical Equipment with Adobe Illustrator, Part 2: Creating and Modifying Shapes," Jan./Feb., pp. 59–61.

Tofan, Daniel, "Drawing Chemical Equipment with Adobe Illustrator, Part 3: Gradients, Retouching, and More Objects," Mar./Apr., pp. 60–61.

Tohline, Joel E., , Jinghya Ge, Wesley Even, and Erik Anderson, "A Customized Python Module for CFD Flow Analysis within VisTrails," May/June, pp. 68–73.

Townsley, Dean M., "Treating Unresolvable Flame Physics in Simulations of Thermonuclear Supernovae," Mar./Apr., pp. 18–23.

Tripiccione, Raffaele (lele), see Belletti, Francesco.

Tromp, Jeroen, see Dunning, Thom H.

Turner, Peter, see Bungartz, Hans-Joachim.

V

Vanter, Michael L. Van De, see Faulk, Stuart.

Vargas, Héctor, , José Sánchez-Moreno, Sebastián Dormido, Christophe Salzmann, Denis Gillet,



and Francisco Esquembre, "Web-Enabled Remote Scientific Environments," May/June, pp. 36–46.

Varshney, Amitabh, see Stantchev, George.

Velasco, José Luis, see Belletti, Francesco.

Vesperini, Enrico, , David M. Goldberg, Stephen L.W. McMillan, James Dura, and Douglas Jones, "The Beowulf Analysis Symbolic INterface: Interactive Parallel Data Analysis for Everyone," Mar./Apr., pp. 45–51.

Votta, Lawrence G., see Faulk, Stuart.

W

Wamsler, Benjamin, seeMüller, Daniel.

Wang, Zheng-Min, see Xie, You-Zhou.

Warren, James A., see Guyer, Jonathan E.

Wheeler, Daniel, see Guyer, Jonathan E.

White, Jr., Andrew B., see Henning, Paul.

Wilson, Greg, , and Andrew Lumsdaine, "Software Engineering and Computational Science," Nov./Dec., pp. 12–13.

X

Xie, You-Zhou, , Lin Yang, Li-Fen Chen, Pei-Dong Dai, Tian-Yu Zhang, Jim X. Chen, and Zheng-Min Wang, "A Virtual Platform for Auditory Organ Mechanics Analysis," July/Aug., pp. 74–80.

Xue, Ming, see Dunning, Thom H.

Y

Yang, Lin, see Xie, You-Zhou.

Yllanes, David, see Belletti, Francesco.



Z

Zanier, Gianpaolo, see Belletti, Francesco.

Zee, Field G. Van, , Ernie Chan, Robert A. van de Geijn, Enrique S. Quintana-Ortí, and Gregorio Quintana-Ortí, "The libflame Library for Dense Matrix Computations," Nov./Dec., pp. 56–63.

Zhang, Tian-Yu, see Xie, You-Zhou.

Zhang, Yang, , and Edward Luke, "Concurrent Composition Using Loci," May/June, pp. 27–35.

Zingale, Michael, see Almgren, Ann S.

Subject Index

A

Also in this Issue

"Descriptions and Comparisons of Monte Carlo Algorithms," Larry Engelhardt, Nov./Dec., pp. 103.

"Next-Generation Research and Breakthrough Innovation," Thomas C. McMail, Nov./Dec., pp. 76–84.

"Trailblazing with Roadrunner," Paul Henning, and Andrew B. White Jr., July/Aug., pp. 91–95.

B

Books

"Computation in Modern Physics," Norman Chonacky, July/Aug., pp. 6–7.

"That Perfect Algorithm for Any Occasion," William H. Press, Sep./Oct., pp. 5–6.

"Total Tomography," Michael Jay Schillaci, Mar./Apr., pp. 12–13.

C



Cloud Computing

"Graph Twiddling in a MapReduce World," Jonathan Cohen, July/Aug., pp. 29–41.

"Guest Editor's Introduction: Cloud Computing for the Sciences," Francis Sullivan, July/Aug., pp. 10–11.

"A High-Performance Computing Forecast: Partly Cloudy," Thomas Sterling, and Dylan Stark, July/Aug., pp. 42–49.

"SQL in the Clouds," James L. Johnson, July/Aug., pp. 12–28.

Computational Astrophsyics

"Advances in Computational Astrophysics," Alan C. Calder, and Richard T. Kouzes, Mar./Apr., pp. 15–17.

"The Beowulf Analysis Symbolic INterface: Interactive Parallel Data Analysis for Everyone,"Enrico Vesperini, David M. Goldberg, Stephen L.W. McMillan, James Dura, and Douglas Jones, Mar./Apr., pp. 45–51.

"A New Low Mach Number Approach in Astrophysics," Ann S. Almgren, John B. Bell, Andy Nonaka, and Michael Zingale, Mar./Apr., pp. 24–33.

"Stellar Core Collapse: A Case Study in the Design of Numerical Algorithms for Scalable Radiation Hydrodynamics," Eric S. Myra, F. Douglas Swesty, and Dennis C. Smolarski, Mar./Apr., pp. 34–44.

"Treating Unresolvable Flame Physics in Simulations of Thermonuclear Supernovae," Dean M. Townsley, Mar./Apr., pp. 18–23.

Computer Architecture

"Compute Unified Device Architecture Application Suitability," Wen-Mei Hwu, Christopher Rodrigues, Shane Ryoo, and John Stratton, May/June, pp. 16–26.

Computer Simulations

"3D Imaging and Simulation of Elastic Properties of Porous Materials," Mahyar Madadi, Anthony



C. Jones, Christoph H. Arns, and Mark A. Knackstedt, July/Aug., pp. 65–73.

"An Overview of Monte Carlo Methods for Fluid Simulation," Gerassimos Orkoulas, Sep./Oct., pp. 76–87.

"Computer Simulation of Granular Materials," Mohammad Saadatfar, Jan./Feb., pp. 66–74.

"Computing with Curvelets: From Image Processing to Turbulent Flows," Jianwei Ma, and Gerlind Plonka, Mar./Apr., pp. 72–80.

"Molecular Response to Ultrashort Laser Pulses," Hong Tang, Yusheng Dou, and Mingze Bai, May/June, pp. 47–53.

Computing Prescriptions

"Cut It Out!," Isabel Beichl, and Francis Sullivan, May/June, pp. 74–79.

"Quickhull: Computing Convex Hulls Quickly," Ernst Mücke, Sep./Oct., pp. 54–57.

D

Data Visualization

"JHelioviewer: Visualizing Large Sets of Solar Images Using JPEG 2000," Daniel Müller, Bernhard Fleck, George Dimitoglou, Benjamin W. Caplins, Desmond E. Amadigwe, Juan Pablo García OrtizBenjamin Wamsler, Alen Alexanderian, V. Keith Hughitt, and Jack Ireland, Sep./Oct., pp. 38–47.

"On Safari in the File Format Jungle—Why Can't You Visualize My Data?," Werner Benger, Nov./Dec., pp. 98–102.

E

Education

"Computational Science and Engineering Education: SIAM's Perspective," Hans-Joachim Bungartz, Donald Estep, Ulrich Rüdeand Peter Turner, Nov./Dec., pp. 5–11.

"Drawing Chemical Equipment with Adobe Illustrator, Part 2: Creating and Modifying Shapes,"



Daniel Tofan, Jan./Feb., pp. 59–61.

"Drawing Chemical Equipment with Adobe Illustrator, Part 3: Gradients, Retouching, and More Objects," Daniel Tofan, Mar./Apr., pp. 60–61.

"Postprocessing in Automated Grading Systems, Part 1," Peter A. Knipp, and S. Raj Chaudhury, May/June, pp. 64–67.

"Postprocessing in Automated Grading Systems, Part 2," Peter A. Knipp, and S. Raj Chaudhury, July/Aug., pp. 82–85.

"Postprocessing in Automated Grading Systems, Part 3," Peter A. Knipp, and S. Raj Chaudhury, Sep./Oct., pp. 64–67.

F

From the Editors

"A Personal Reflection," Jim X. Chen, July/Aug., pp. 3.

"Begin at the Beginning," Isabel Beichl, Jan./Feb., pp. 3.

"Computational Thinking and Doing," George K. Thiruvathukal, Nov./Dec., pp. 4.

"The Promise of Science-Based Computational Engineering," Douglass Post, May/June, pp. 3–4.

"We'll Take Care of All Your Problems," Isabel Beichl, Mar./Apr., pp. 3–4.

"Where the Rubber Meets the Road," Isabel Beichl, Sep./Oct., pp. 3.

H

High-Performance Computing

"Using Graphics Processors for High-Performance Computation and Visualization of Plasma Turbulence," George Stantchev, Derek Juba, William Dorland, and Amitabh Varshney, Mar./Apr., pp. 52–59.

N



News

"Computational Science Research and Graduate Studies at San Diego State University," Rubin Landau, and Jose E. Castillo, July/Aug., pp. 5.

"First International Workshop on Software Engineering for Computational Science & Engineering,"Jeffrey C. Carver, Mar./Apr., pp. 7–11.

Novel Architectures

"Novel Computing Architectures," Volodymyr Kindratenko, May/June, pp. 54–57.

"Solving Computational Problems with GPU Computing," Jonathan Cohen, and Michael Garland, Sep./Oct., pp. 58–63.

P

Parallel Programming

"Concurrent Composition Using Loci," Yang Zhang, and Edward Luke, May/June, pp. 27–35.

"Parallel Programming with Skeletons," Joel Falcou, May/June, pp. 58–63.

Petascale Computing

"Challenges and Opportunities in Preparing Students for Petascale Computational Science and Engineering," Sharon C. Glotzer, Bob Panoff, and Scott Lathrop, Sep./Oct., pp. 22–27.

"The Challenges of Petascale Architectures," Peter M. Kogge, Sep./Oct., pp. 10–16.

"Guest Editor's Introduction: Science and Engineering on Petascale Computers," Thom H. Dunning, Sep./Oct., pp. 7–9.

"Science and Engineering in the Petascale Era," Thom H. Dunning, Klaus Schulten, Jeroen Tromp, Jeremiah P. Ostriker, Kelvin Droegemeier, Ming Xue, and Paul Fussell, Sep./Oct., pp. 28–37.

"Software for Petascale Computing Systems," William D. Gropp, Sep./Oct., pp. 17–21.



R

Reproducible Research

"Distributed Reproducible Research Using Cached Computations," Roger D. Peng, and Sandrah P. Eckel, Jan./Feb., pp. 28–34.

"Guest Editors' Introduction: Reproducible Research," Sergey Fomel, and Jon F. Claerbout, Jan./Feb., pp. 5–7.

"The Legal Framework for Reproducible Scientific Research: Licensing and Copyright," Victoria Stodden, Jan./Feb., pp. 35–40.

"Python Tools for Reproducible Research on Hyperbolic Problems," Randall J. LeVeque, Jan./Feb., pp. 19–27.

"Reproducible Research in Computational Harmonic Analysis," David L. Donoho, Arian Maleki, Inam Ur Rahman, Morteza Shahram, and Victoria Stodden, Jan./Feb., pp. 8–18.

S

Scientific Computing

"Janus: An FPGA-Based System for High-Performance Scientific Computing," Francesco Belletti, Maria Cotallo, Andrés CruzLuis Antonio Fernandez, Antonio Gordillo-Guerrero, Marco Guidetti, Andrea Maiorano, Filippo Mantovani, Enzo Marinari, Victor Martin-Mayor, Antonio Muñoz-SudupeDenis Navarro, Giorgio Parisi, Sergio Perez-Gaviro, Mauro Rossi, Juan Jesús Ruiz-LorenzoSebastiano Fabio Schifano, Daniele Sciretti, Alfonso Tarancon, Raffaele (lele) Tripiccione, José Luis VelascoDavid Yllanes, and Gianpaolo Zanier, Jan./Feb., pp. 48–58.

"Scientific and Engineering Computing Using ATI Stream Technology," Amr Bayoumi, Michael Chu, Yasser Hanafy, Patricia Harrell, and Gamal Refai-Ahmed, Nov./Dec., pp. 92–97.

"Scientific Scripting for the Java Platform with jLab," Stergios Papadimitriou, Konstantinos Terzidis, Seferina Mavroudi, and Spiridon Likothanassis, July/Aug., pp. 50–60.

Scientific Programming

"Essential Tools: Version Control Systems," Konrad Hinsen, Konstantin Läuferand George K. Thiruvathukal, Nov./Dec., pp. 84–91.



"FiPy: Partial Differential Equations with Python," Jonathan E. Guyer, Daniel Wheeler, and James A. Warren, May/June, pp. 6–15.

"High-Productivity Software Development with pMatlab," Julie Mullen, Nadya Bliss, Robert Bond, Jeremy Kepner, Hahn Kim, and Albert Reuther, Jan./Feb., pp. 75–79.

"The Promises of Functional Programming," Konrad Hinsen, July/Aug., pp. 86–90.

"The Promises of Typed, Pure, and Lazy Functional Programming: Part II," Konstantin Läufer, and George K. Thiruvathukal, Sep./Oct., pp. 68–75.

"Putting a Slug to Work," Konstantin Läufer, George K. Thiruvathukal, Ryohei Nishimura, and Carlos Ramírez Martínez-Eiroa, Mar./Apr., pp. 62–68.

Scientific Software

"Automated Software Testing for Matlab," Steven L. Eddins, Nov./Dec., pp. 48–55.

"Engineering the Software for Understanding Climate Change," Steve M. Easterbrook, and Timothy C. Johns, Nov./Dec., pp. 65–74.

"Five Recommended Practices for Computational Scientists Who Write Software," Diane Kelly, Daniel Hook, and Rebecca Sanders, Sep./Oct., pp. 48–53.

"The libflame Library for Dense Matrix Computations," Field G. Van Zee, Ernie Chan, Robert A. van de Geijn, Enrique S. Quintana-Ortíand Gregorio Quintana-Ortí, Nov./Dec., pp. 56–63.

"Managing Chaos: Lessons Learned Developing Software in the Life Sciences," Sarah Killcoyne, and John Boyle, Nov./Dec., pp. 20–29.

"Mutation Sensitivity Testing," Daniel Hook, and Diane Kelly, Nov./Dec., pp. 40–47.

"Report: The Second International Workshop on Software Engineering for CSE," Jeffrey C. Carver, Nov./Dec., pp. 14–19.

"Scientific Computing's Productivity Gridlock: How Software Engineering Can Help," Stuart Faulk, Eugene Loh, Michael L. Van De Vanter, Susan Squires, and Lawrence G. Votta, Nov./Dec., pp. 30–39.



"Software Engineering and Computational Science," Greg Wilson, and Andrew Lumsdaine, Nov./Dec., pp. 12–13.

T

Technologies

"Getting Started with GPU Programming," Michael A. Gray, July/Aug., pp. 61–64.

The Last Word

"Advice from Uncle Charles," Charles Day, Sep./Oct., pp. 96.

"Compute? No, Mr. Bond, I Expect You to Die!," Charles Day, Mar./Apr., pp. 88.

"Lessons from Little Dorrit," Charles Day, Nov./Dec., pp. 104.

"A Modern Tower of Babel," Norman Chonacky, May/June, pp. 80.

"That Was Then, This Is Now," Francis Sullivan, Jan./Feb., pp. 80.

"Vets 1, Docs 1," Charles Day, July/Aug., pp. 96.

V

Visualization Corner

"A Customized Python Module for CFD Flow Analysis within VisTrails," Joel E. Tohline, Jinghya Ge, Wesley Even, and Erik Anderson, May/June, pp. 68–73.

"Creating a GUI for Zori, a Quantum Monte Carlo Program," Roberto Olivares-Amaya, Romelia Salomón-FerrerWilliam A. Lester Jr., and Carlos Amador-Bedolla, Jan./Feb., pp. 41–47.

"Interactive Holography: Pursuit of a Dream," Mark Sich, Jan./Feb., pp. 62–65.

"Marching Cubes without Skinny Triangles," Carlos A. Dietrich, Carlos E. Scheidegger, João L.D. CombaLuciana P. Nedel, and Cláudio T. Silva, Mar./Apr., pp. 82–87.



"Robust Topology-Based Multiscale Analysis of Scientific Data," Attila Gyulassy, Luis Gustavo Nonato, Peer-Timo Bremer, Claudio Silva, and Valerio Pascucci, Sep./Oct., pp. 88–95.

"A Virtual Platform for Auditory Organ Mechanics Analysis," You-Zhou Xie, Lin Yang, Li-Fen Chen, Pei-Dong Dai, Tian-Yu Zhang, Jim X. Chen, and Zheng-Min Wang, July/Aug., pp. 74–80.

W

Web-Based Interaction

"Web-Enabled Remote Scientific Environments," Héctor Vargas, José Sánchez-MorenoSebastián DormidoChristophe Salzmann, Denis Gillet, and Francisco Esquembre, May/June, pp. 36–46.


2009 computing in science and engineering author index · 2009 computing in science and engineering...

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