39th mtg in nibio

Download 39th MTG in NIBIO

Post on 14-Jul-2015

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  • 2014/12/26

    39DB Integrated MTG in NIBIO

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  • Sagace

    DB

    RDF

    SPARQLthon

    2

  • DB,

    Open TG-GATEs

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  • http://sagace.nibio.go.jp/devel/

    metadata.html

    http://prezi.com/ewunmgczcjcv/

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  • DB DB

    Gene Reviews Orphanet UR-DBMS() ClinicalTrials.gov

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  • RDF SIDER

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    PREFIX dcterms: PREFIX sider_vocab: PREFIX bio2rdf: select distinct ?side_effect where{ ?drug sider_vocab:generic-name ?generic; sider_vocab:pubchem-compound-id ?pubchem; sider_vocab:side-effect ?side. ?generic dcterms:title "allopurinol"@en . ?pubchem bio2rdf:identifier ?pubchem_id. ?side dcterms:title ?side_effect. } ORDER BY ?side_effect

  • 7

  • RDF SIDER

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    PREFIX dcterms: PREFIX sider_vocab: SELECT distinct ?side_effect ?frequency_data WHERE { ?drug sider_vocab:generic-name ?generic; sider_vocab:pubchem-compound-id ?pubchem_id. ?drugeffect sider_vocab:drug ?drug; dcterms:title ?drugeffectname; sider_vocab:reported-frequency ?frequency. ?frequency dcterms:title ?frequency_data; sider_vocab:preferred-term ?side. ?side dcterms:title ?side_effect. }

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  • Bio2RDFSPARQL Endpoint SIDEROWLIM

    Open TG-GATEs PubChem ID PubChem ID SIDERRDFfrom Open TG-

    GATEs) SIDERRDF

    predicate 10

  • 11

  • 170

    58 43 SIDER

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  • http://10.100.0.34/link/toxico/chemicaliquery.html

    PHP

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  • ICD10 MedDRA

    SFC or ()IMICOWL

    csv, json, rdf ?

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  • RDF

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  • NBDC

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  • SPARQLthon 1218

    Open TG-GATEsSIDER with @DBCLS

    ICD10RDFLSD with @DBCLS

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  • 123) or 30 BioHackathon

    226

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