(protein complex) (protein-protein interactions;PPI)

(protein-protein interaction)(protein-protein interaction network)

Gene IDUniportProtein GI604P41182gi7289529759P56524gi259016348

:BOND (protein GI)MIPS (Uniprot) and (Gene ID or Entrez ID)NCBIBiogrid (Gene ID or Entrez ID)DIPGene Ontology (GO)GNSBLASTNCBI - Batch

BONDBONDGO653 Go AnnotatorDB Cross ReferenceBONDGO

BINDIDGIGOIDGOName1282445059113677DNA binding1282445059115524ATP binding1282445059115634nucleus1282445059116281DNA repair1282445059116298mismatch repair1282445059116355regulation of transcription, DNA-dependent12824450591145786negative regulation of cell cycle

BINDIDGIGOIDGOName1282445059113677DNA binding1282445059115524ATP binding1282445059115634nucleus1282445059116281DNA repair1282445059116298mismatch repair1282445059116355regulation of transcription, DNA-dependent12824450591145786negative regulation of cell cycle

BOND()

:http://bond.unleashedinformatics.com/Action?pg=1001

BOND()

BOND()

BOND()

Mips

: http://mips.helmholtz-muenchen.de/genre/proj/corum/

Mips()

Mips(EX)Mips;;;;uniport ID();Gene ID()1;BCL6-HDAC4 complex;;Human;P41182P56524;604 9759;

DIPDIP

edge idnode A idnode A GUE idnode A SwissProt idnode A PIR idnode AGI codenode B idnode B GUE idnode B SwissProt idnode B PIR idnode BGI codeDIP:18671EDIP:17012NSkp1pP3499116777215DIP:17013NCul1pQ136163139077DIP:44805EDIP:17012NSkp1pP3499116777215DIP:27532NIkBbetaQ15653703118DIP:44780EDIP:139NIkBalphaP25963A3993510092619DIP:17012NSkp1pP3499116777215

:http://dip.doe-mbi.ucla.edu/dip/Main.cgi

NCBI

:http://www.ncbi.nlm.nih.gov/

NCBI

BioGridBioGrid BioGridDIP

:http://thebiogrid.org/download.php

:9606

INTERACTOR_AINTERACTOR_BOFFICIAL_SYMBOL_AOFFICIAL_SYMBOL_BALIASES_FOR_AALIASES_FOR_BEXPERIMENTAL_SYSTEMSOURCEPUBMED_IDORGANISM_A_IDORGANISM_B_IDEG1134EG1146CHRNA1CHRNGACHRA|ACHRD|CHRNA|CMS2A|FCCMS|SCCMSACHRG|MGC133376InvitroKreienkamp HJ (1995)769591096069606EG70EG7454ACTCWASCMD1R|ACTC1IMD2|THC|WASPInvivoScott MP (2002)1202908896069606EG2039EG70EPB49ACTCDMTCMD1R|ACTC1InvivoKhanna R (2002)1201142796069606

BioGrid

Gene OntologyGO Molecular FunctionBiological Process Cellular Component

Gene Ontology

GO format function processcomnpentdefs

Homo sapiens GO Annotations

GNS:NCBI:Blast:

GNS

http://bioagent.iis.sinica.edu.tw/GeneAlias/#

How to UseA. Search Methods (1) FullText

MySQL FullText 1. 2.

(2) Exact Match

1. (Id)

(3) Blurred Match

1.

B. Search Hints

(1)

1. , (A2MAACS)

(2)

1.

2. 20000

Select Batch Search

Batch Search

Column Selected

Selected : Uniprot/Swissprot.txt

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Results

NCBI-batch

Select the database : GeneUpload the text filePress the retrieve button

http://www.ncbi.nlm.nih.gov/sites/batchentrez?db=Nucleotide

Protein-andDatabaseProtein

FASTA

Blast()1.C C:\ncbi-blastn\2.(blast-2.2.13-ia32-win32)3. [NCBI] Data="C:\ncbi-blast\data"4.ncbi.inic:\WINDOWS

Blast()5.(blast-2.2.13-ia32-win32.exe)6.Path;c:\ncbi-blastNCBI Blastn

Blast146490NCBI Blastblastp

Blast()batfasta

Blast():Format->Score->1-6bat

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