a flip trap screen reveals a novel transcript in the hoxb genomic region

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Studies in tetrapod and teleost fish model systems have yielded detailed insight into the molecular basis of limb/fin bud outgrowth and polarity, but we have relatively little understanding of how skeletal patterning and regeneration are directly controlled. I approach this problem by exploiting the natural diversity of vertebrate fin and limb morphologies and regenerative strategies. Through comparative analyses of non-model organisms drawn from all major vertebrate groups cartilaginous fishes, ray-finned fishes, and tetrapods I have identified two mechanisms of appendage morphogenesis primitive to vertebrates: the conserved role of Sonic hedgehog (Shh) in anteropos- terior patterning, and the ability to regenerate the adult endoskeleton. However, taxon-specific differences were observed in both the regulation of Shh signaling and the mechanism of appendage regeneration. These differences may have important implications for understanding how evolution generates lineage-specific variation, such as the loss of humans' ability to regenerate limbs. doi:10.1016/j.ydbio.2009.05.252 Program/Abstract # 230 Non-autonomous control of the orientation of actin-based protrusions Stacie A. Dilks, Stephen DiNardo Department of Cell and Developmental Biology, University of Pennsylvania, USA The ability of epidermal cells to form elaborately shaped actin-based protrusions is vital to many cellular functions such as hearing and mechanosensation, but it is unknown how protrusions are shaped. Certain Drosophila embryonic epidermal cells construct actin-based protrusions, called denticles, which exhibit stereotyped, row-specific differences in size, density, and hook orientation. This precise denticle pattern is conserved throughout all drosophilids yet studied, and screening for mutations that affect this pattern has been used as a powerful approach to identify genes involved in developmental decisions and signaling pathways. However, how row-specific differences are specified and the mechanism(s) involved have remained elusive. Here, we link developmental patterning signals to the morphogenetic event of denticle shaping via the transcription factor stripe and the spectraplakin shortstop (shot). First, we demonstrate that stripe is required, non- autonomously, for the unique anterior hook orientation observed in the row one and four denticles. Secondly, we show that stripe specifies anterior denticle hooking via upregulation of shot. Spectraplakins are extremely large cytoskeletal proteins, generally thought to function by linking cytoskeletal elements to one another or the membrane. Consistent with this, the interaction of shot with microtubules is required for proper denticle hooking, revealing novel roles for spectraplakins and the microtubule cytoskeleton in the shaping of actin-based protrusions. doi:10.1016/j.ydbio.2009.05.253 Program/Abstract # 231 Using gene ontology to study branching morphogenesis in mice David P. Hill a,b , Dmitry Sitnikov a , Judith A. Blake a,b a Mouse Genome Informatics, The Jackson Laboratory, Bar Harbor, ME, USA b The Gene Ontology Consortium, USA Branching is a key morphological feature in the development of many anatomical structures in mammalian embryos. Genes that control the normal branching morphogenesis of these structures also have been implicated in neoplastic disease. Branching during development occurs in structures such as the lung, kidney, prostate gland, mammary gland, submandibular glands, placenta and blood vessels. We are interested in understanding the similarities and differences in the genetic programs involved in normal branching morphogenesis. We are actively extending the Gene Ontology (GO) resource to include processes of branching morphogenesis in mammals. We are linking genes with these processes by capturing information from the primary scientific literature. We present an analysis of the similarities and differences of the genetic programs that influence different types of branching morphogenesis processes in the mouse. This analysis is the first step in understanding the evolution of branching morphogenesis within an organism and between organisms, and how this morphogenetic process may undergo perturbation that results in malignancy. The Gene Ontology project is funded by NHGRI grant HG002273. doi:10.1016/j.ydbio.2009.05.254 Program/Abstract # 232 Regulation of Bcl2 family members by retinoic acid and Fgf8 during interdigital regression Rocio Hernandez, Susana Castro-Obregón, Luis Covarrubias Department of Developmental Genetics and Molecular Physiology, Instituto de Biotecnología, Universidad Nacional Autónoma de México, Cuernavaca, Morelos, Mexico Retinoic acid (RA), a derivative of vitamin A, signals through the binding to RAR and RXR receptors. During mouse limb development RA functions as a proximalizing factor in the limb bud and, at later stages, as a cell death inducer in the interdigital regions. We have determined that RA is the persistent cell death-inducing signal acting on distal mesenchymal cells of the developing limb. This death- inducing activity of RA is counteracted by the survival activity of Fgf8 during limb/digit growth. Crosstalk between RA and Fgf8 involves the transcriptional regulation of genes involved in signaling. In order to find an interaction between these two molecules at the level of the cell death machinery, we studied the regulation of Bcl2 family members. Using a bioinformatics approach, we found that the promoter of the proapoptotic Bax gene contains several putative binding sites for RAR nuclear receptors. In agreement with a transcriptional regulation, RA up-regulated the Bax expression in the whole distal region of mouse limbs. Pharmacological inhibition of RARa, RARb and RARg suggests that RARg is the main receptor responsible of the RA-inducing death activity. The role of Fgf8 and antiapoptotic Bcl2 family members in counteracting the Bax activity in growing limb regions will be presented. This work was supported by DGAPA-UNAM (IN218607). doi:10.1016/j.ydbio.2009.05.255 Program/Abstract # 233 A flip trap screen reveals a novel transcript in the HoxB genomic region Ankur Saxena a , Le A. Trinh a , Sean G. Megason b , Scott E. Fraser a , Marianne Bronner-Fraser a a Div. of Biology, California Institute of Technology, Pasadena, CA, USA b Department of Systems Biology, Harvard Medical School, Boston, MA, USA Abstract #233 will be presented as scheduled, but will not be published due to lack of license agreement between authors and publisher. doi:10.1016/j.ydbio.2009.05.256 Abstracts / Developmental Biology 331 (2009) 442455 454

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Studies in tetrapod and teleost fish model systems have yieldeddetailed insight into the molecular basis of limb/fin bud outgrowthand polarity, but we have relatively little understanding of howskeletal patterning and regeneration are directly controlled. I approachthis problem by exploiting the natural diversity of vertebrate fin andlimb morphologies and regenerative strategies. Through comparativeanalyses of non-model organisms drawn from all major vertebrategroups cartilaginous fishes, ray-finned fishes, and tetrapods I haveidentified two mechanisms of appendage morphogenesis primitive tovertebrates: the conserved role of Sonic hedgehog (Shh) in anteropos-terior patterning, and the ability to regenerate the adult endoskeleton.However, taxon-specific differences were observed in both theregulation of Shh signaling and the mechanism of appendageregeneration. These differences may have important implications forunderstanding how evolution generates lineage-specific variation,such as the loss of humans' ability to regenerate limbs.

doi:10.1016/j.ydbio.2009.05.252

Program/Abstract # 230Non-autonomous control of the orientation ofactin-based protrusionsStacie A. Dilks, Stephen DiNardoDepartment of Cell and Developmental Biology, University ofPennsylvania, USA

The ability of epidermal cells to form elaborately shaped actin-basedprotrusions is vital to many cellular functions such as hearing andmechanosensation, but it is unknown how protrusions are shaped.Certain Drosophila embryonic epidermal cells construct actin-basedprotrusions, called denticles, which exhibit stereotyped, row-specificdifferences in size, density, and hook orientation. This precise denticlepattern is conserved throughout all drosophilids yet studied, andscreening for mutations that affect this pattern has been used as apowerful approach to identify genes involved in developmental decisionsand signaling pathways. However, how row-specific differences arespecified and the mechanism(s) involved have remained elusive. Here,we link developmental patterning signals to themorphogenetic event ofdenticle shaping via the transcription factor stripe and the spectraplakinshortstop (shot). First, we demonstrate that stripe is required, non-autonomously, for the unique anterior hook orientation observed in therow one and four denticles. Secondly, we show that stripe specifiesanterior denticle hooking via upregulation of shot. Spectraplakins areextremely large cytoskeletal proteins, generally thought to function bylinking cytoskeletal elements to one another or the membrane.Consistentwith this, the interaction of shotwithmicrotubules is requiredfor proper denticle hooking, revealing novel roles for spectraplakins andthe microtubule cytoskeleton in the shaping of actin-based protrusions.

doi:10.1016/j.ydbio.2009.05.253

Program/Abstract # 231Using gene ontology to study branching morphogenesis in miceDavid P. Hilla,b, Dmitry Sitnikova, Judith A. Blakea,baMouse Genome Informatics, The Jackson Laboratory, Bar Harbor, ME, USAbThe Gene Ontology Consortium, USA

Branching is a key morphological feature in the development ofmany anatomical structures in mammalian embryos. Genes thatcontrol the normal branching morphogenesis of these structures alsohave been implicated in neoplastic disease. Branching duringdevelopment occurs in structures such as the lung, kidney, prostate

gland, mammary gland, submandibular glands, placenta and bloodvessels. We are interested in understanding the similarities anddifferences in the genetic programs involved in normal branchingmorphogenesis. We are actively extending the Gene Ontology (GO)resource to include processes of branching morphogenesis inmammals. We are linking genes with these processes by capturinginformation from the primary scientific literature. We present ananalysis of the similarities and differences of the genetic programsthat influence different types of branching morphogenesis processesin the mouse. This analysis is the first step in understanding theevolution of branching morphogenesis within an organism andbetween organisms, and how this morphogenetic process mayundergo perturbation that results in malignancy.

The Gene Ontology project is funded by NHGRI grant HG002273.

doi:10.1016/j.ydbio.2009.05.254

Program/Abstract # 232Regulation of Bcl2 family members by retinoic acid and Fgf8during interdigital regressionRocio Hernandez, Susana Castro-Obregón, Luis CovarrubiasDepartment of Developmental Genetics and Molecular Physiology,Instituto de Biotecnología, Universidad Nacional Autónoma de México,Cuernavaca, Morelos, Mexico

Retinoic acid (RA), a derivative of vitamin A, signals through thebinding to RAR and RXR receptors. During mouse limb developmentRA functions as a proximalizing factor in the limb bud and, at laterstages, as a cell death inducer in the interdigital regions. We havedetermined that RA is the persistent cell death-inducing signal actingon distal mesenchymal cells of the developing limb. This death-inducing activity of RA is counteracted by the survival activity of Fgf8during limb/digit growth. Crosstalk between RA and Fgf8 involvesthe transcriptional regulation of genes involved in signaling. In orderto find an interaction between these two molecules at the level of thecell death machinery, we studied the regulation of Bcl2 familymembers. Using a bioinformatics approach, we found that thepromoter of the proapoptotic Bax gene contains several putativebinding sites for RAR nuclear receptors. In agreement with atranscriptional regulation, RA up-regulated the Bax expression inthe whole distal region of mouse limbs. Pharmacological inhibition ofRARa, RARb and RARg suggests that RARg is the main receptorresponsible of the RA-inducing death activity. The role of Fgf8 andantiapoptotic Bcl2 family members in counteracting the Bax activityin growing limb regions will be presented.

This work was supported by DGAPA-UNAM (IN218607).

doi:10.1016/j.ydbio.2009.05.255

Program/Abstract # 233A flip trap screen reveals a novel transcript in the HoxBgenomic regionAnkur Saxenaa, Le A. Trinha, Sean G. Megasonb, Scott E. Frasera,Marianne Bronner-FraseraaDiv. of Biology, California Institute of Technology, Pasadena, CA, USAbDepartment of Systems Biology, Harvard Medical School, Boston, MA, USA

Abstract #233 will be presented as scheduled, but will not bepublished due to lack of license agreement between authors andpublisher.

doi:10.1016/j.ydbio.2009.05.256

Abstracts / Developmental Biology 331 (2009) 442–455454