a nana-rama? – an exploration of genetic divergence and ... · boundaries and resolve their...

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Acknowledgements: SAM, WAM, MAGNT for samples, [email protected] [email protected] Contact: AWC, Dunkeld Pastoral, DPaW and TOs for collaboration and assistance in the field ABRS & ARC grants Future directions Analysis of >20 nDNA loci using sequence capture is underway to test lineage boundaries and resolve their relaonships, and to check for introgression. More intensive analysis of emerging contact zones Further molecular invesgaon of new lineages, including EIU nana, south Kimberley limestone sp., nana5 and King Edward sp. Further morphological invesgaon, including CT scanning of bone structure Results & Discussion G. nana is paraphylec for mtDNA with high lineage diversity. Candidate lineages and species in the ‘nana complex’ have an average sequence divergence of 20-30%, on a par with that across the Australis group. Morphological data was obtained from ~20 specimens of each candidate lineage and sister species (genotypes were based solely on MtDNA results). Mulvariate analyses (Principal Components and Discriminant Funcon) analyses were performed on 13 body measurements and 8 merisc characters. There is considerable overlap in body size and merisc characters; however, G. occidentalis, nana5 and south Kimberley sp. can be differenated from a group consisng of nana1, nana4 and nana6, and G. mulporosa. Our ability to separate mulporosa from sympatric ‘nana’ in the north Kimberley would be compromised if mulporosa mtDNA introgresses locally into nana4 & nana6 Results suggest mulple overlapping lineages in both the north and south of the Kimberley. The southern lineages should be diagnosable using a combinaon of body size, merisc characters and dorsal paern. The northern lineages are more problemac, and it is difficult to reliably idenfy ungenotyped individuals. Currently there are eight described Gehyra species in the Kimberley. Diversity of this region remains underesmated and the number of recognised Gehyra species could at least double. Figure 3: Distribution of genotyped Gehyra (Kimberley ‘nana’ groups, south Kimberley sp., G. multiporosa & G. occidentalis) in the Kimberley region, WA. Figure 2: Canonical plots of A) meristic characters, and B) body size Figure 4: Toe pads of nana6 individuals showing A) granule present between proximal subdigital lamellae, and B) granule absent B A A B The rugged terrain of the Kimberley Plateau in north-western Australia is a recognised hotspot of gekkonid diversity. The availability of moist, rocky refugia may have supported species survival and diversificaon during past climac fluctuaons. The Kimberley Gehyra, which currently comprise eight species, are one component of a diverse fauna endemic to the region. The Gehyra genus displays considerable within-species variaon yet conservave interspecific morphology, and this is reflected in the frequent misidenficaons in Gehyra of broadly similar appearance, including the common and widespread rock-inhabing Gehyra nana. Thus, our goal was to complete a genec and morphological review of these ‘small brown spoy geckos’. Background Figure 1: SPOT the difference: A: (L to R) nana1, nana4, nana6, nana5 B: variation in type nana (nana4) B A 0.05 * * * * * ** ** * * * ** * * *** * * ** ** north Kimberley south Kimberley & north Pilbara north-central Kimberley south Kimberley south Kimberley Top End -> VRD south Kimberley -> VRD Arid (var-punc group) NW Kimberley (type nana) Bullo River & Litchfield west Kimberley - Cockburn & Warmun south Kimberley Outgroup <- new species <- new species King Edward sp. EIU nana purpurascens nana4 south Kimberley sp. multiporosa occidentalis south Kimberley limestone sp. nana2 nana1 nana3 nana6 nana5 australis clade Figure 5: Preliminary phylogenetic tree using RAxML with GTR + G model for 504 individuals for 1124bp of ND2 gene. Model selection was carried out using PartitionFinder (* = 100, ** = 95 – 98, *** = 94 bootstraps). A nana-rama? – an exploration of genetic divergence and cryptic morphology in the Kimberley Gehyra nana 1. Research School of Biology, Australian National University, Canberra 2. Centre for Biodiversity Analysis 4. Western Australian Museum 3. University of Melbourne 5. South Australian Museum 6. Dept of Parks and Wildlife, WA. Renae Pratt , Gaye Bourke , Rebecca Laver , Sally Potter , Paul Doughty , Steve Donnellan , Paul Oliver , Russell Palmer , Scott Keogh , Craig Moritz 1,2 1,2 3 3 1,2 1,2 1,2 4 6 5

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Page 1: A nana-rama? – an exploration of genetic divergence and ... · boundaries and resolve their relationships, and to check for introgression. More intensive analysis of emerging contact

Acknowledgements: SAM, WAM, MAGNT for samples, [email protected]@anu.edu.au

Contact:

AWC, Dunkeld Pastoral, DPaW and TOs for collaboration and assistance in the fieldABRS & ARC grants

Future directions

Analysis of >20 nDNA loci using sequence capture is underway to test lineage boundaries and resolve their relationships, and to check for introgression.More intensive analysis of emerging contact zonesFurther molecular investigation of new lineages, including EIU nana, south Kimberleylimestone sp., nana5 and King Edward sp.Further morphological investigation, including CT scanning of bone structure

Results & Discussion

G. nana is paraphyletic for mtDNA with high lineage diversity. Candidate lineages and species in the ‘nana complex’ have an average sequence divergence of 20-30%, on a par with that across the Australis group. Morphological data was obtained from ~20 specimens of each candidate lineage and sister species (genotypes were based solely on MtDNA results).Multivariate analyses (Principal Components and Discriminant Function) analyses were performed on 13 body measurements and 8 meristic characters.There is considerable overlap in body size and meristic characters; however, G. occidentalis, nana5 and south Kimberley sp. can be differentiated from a group consisting of nana1, nana4 and nana6, and G. multiporosa. Our ability to separate multiporosa from sympatric ‘nana’ in the north Kimberley would be compromised if multiporosa mtDNA introgresses locally into nana4 & nana6 Results suggest multiple overlapping lineages in both the north and south of the Kimberley. The southern lineages should be diagnosable using a combination of body size, meristic characters and dorsal pattern. The northern lineages are more problematic, and it is difficult to reliably identify ungenotyped individuals. Currently there are eight described Gehyra species in the Kimberley. Diversity of this region remains underestimated and the number of recognised Gehyra species could at least double.

Figure 3: Distribution of genotyped Gehyra (Kimberley ‘nana’ groups, south Kimberley sp., G. multiporosa & G. occidentalis) in the Kimberley region, WA.

Figure 2: Canonical plots of A) meristic characters, and B) body size Figure 4: Toe pads of nana6 individuals showing A) granule present between proximal subdigital lamellae, and B) granule absent

B

A

A B

The rugged terrain of the Kimberley Plateau in north-western Australia is a recognised hotspot of gekkonid diversity. The availability of moist, rocky refugia may have supported species survival and diversification during past climatic fluctuations. The Kimberley Gehyra, which currently comprise eight species, are one component of a diverse fauna endemic to the region. The Gehyra genus displays considerable within-species variation yet conservative interspecific morphology, and this is reflected in the frequent misidentifications in Gehyra of broadly similar appearance, including the common and widespread rock-inhabiting Gehyra nana. Thus, our goal was to complete a genetic and morphological review of these ‘small brown spotty geckos’.

Background

Figure 1: SPOT the difference: A: (L to R) nana1, nana4, nana6, nana5B: variation in type nana (nana4)

B

A

0.05

*

*

*

*

*

* *

* *

*

*

** *

*

*

* * *

*

*

* *

* *

north Kimberley

south Kimberley &north Pilbara

north-central Kimberley

south Kimberley

south Kimberley

Top End -> VRD

south Kimberley -> VRD

Arid (var-punc group)

NW Kimberley

(type nana)

Bullo River & Litchfield

west Kimberley - Cockburn & Warmun

south Kimberley

Outgroup

<- new species

<- new species

King Edward sp.

EIU nana

purpurascens

nana4

south Kimberley sp.

multiporosa

occidentalis

south Kimberley limestone sp.

nana2

nana1

nana3

nana6

nana5

australis clade

Figure 5: Preliminary phylogenetic tree using RAxML with GTR + G model for 504 individuals for 1124bp of ND2 gene. Model selection was carried out using PartitionFinder (* = 100, ** = 95 – 98, *** = 94 bootstraps).

A nana-rama? – an exploration of genetic divergence and cryptic morphology in the Kimberley Gehyra nana

1. Research School of Biology, Australian National University, Canberra2. Centre for Biodiversity Analysis

4. Western Australian Museum3. University of Melbourne

5. South Australian Museum6. Dept of Parks and Wildlife, WA.

Renae Pratt , Gaye Bourke , Rebecca Laver , Sally Potter , Paul Doughty , Steve Donnellan , Paul Oliver , Russell Palmer , Scott Keogh , Craig Moritz 1,2 1,2 3 31,2 1,2 1,24 65