a tagging system for bioinformatics resources
DESCRIPTION
BioABC talk at ITAB2010 Corfu, GreeceTRANSCRIPT
BIOINFORMATICS RESOURCES
PEDRO LOPES [email protected]
A TAGGING SYSTEM FOR
ITAB2010 - Corfu, Greece
November 2nd, 2010
‣ ENRICH
• Context & meaning
‣ More than sentences
‣ More than paragraphs
‣ CONNECT
• New relations
‣ Amongst documents
‣ Between documents and resources
‣ From documents to applications
‣ ENHANCE
• User experience
‣ New user interactions
‣ Rich web applications
CHALLENGE
‣ ENRICH
• Context & meaning
‣ More than sentences
‣ More than paragraphs
‣ CONNECT
• New relations
‣ Amongst documents
‣ Between documents and resources
‣ From documents to applications
‣ ENHANCE
• User experience
‣ New user interactions
‣ Rich web applications
CHALLENGE
Improve user experience through the establishment of new connections to enrich existing bioinformatics resources?
‣ ANNOTATION
• Read/parse resource
• Cross information with huge dataset
‣ Lexicon
• Identify relevant tokens
‣ TAGGING
• Edit annotated content
• Add HTML tags
• Show contextual layer
SOLUTION
‣ ANNOTATION
• Read/parse resource
• Cross information with huge dataset
‣ Lexicon
• Identify relevant tokens
‣ TAGGING
• Edit annotated content
• Add HTML tags
• Show contextual layer
SOLUTION
(LEXICON + TEXT MINING) x AUGMENTED BROWSING!
‣ SCALABLE
• Lexicon
‣ Changed/updated any time
• Service Deployment
‣ Local
‣ Remote
‣ DYNAMIC
• Augmented browsing
‣ Real time
‣ XML settings file
• Resources
‣ As long as it is online...
‣ AGILE
• User Experience
‣ Lightweight
‣ Integrated in any web app
• Augmented browsing
‣ On-the-fly modal box
HIGHLIGHTS
‣ EVALUATE
• Add to existing applications
• Test usability
‣ PUBLISH
• Offer standalone plugin
‣ Available for any web application
• Offer browser plugin
‣ Firefox + Chrome + Safari
FUTURE PERSPECTIVES
‣ EVALUATE
• Add to existing applications
• Test usability
‣ PUBLISH
• Offer standalone plugin
‣ Available for any web application
• Offer browser plugin
‣ Firefox + Chrome + Safari
FUTURE PERSPECTIVES
ARE YOU INTERESTED?