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Adventures in nanoscale mechanics
Peter M. Hoffmann
Department of Physics & Astronomy
Wayne State University
What’s so special about the nanoscale?
Nano tech nol o gy
Noun, From the Greek, for “give me money for
funding”.
Silicon
What is so special about the nanoscale? Breakdown of continuum picture
Energy transduction and Conversion:
chemical-electrostatic-mechanical-thermal
Rob Philips, Steven Quake, Physics Today May 2006
What is so special about the nanoscale? Convergence of energy scales
What is so special about the nanoscale? Can see onset of collaborative effects which lead to long times
scales
Fast
Slow
Nanosystem examples • Nanoconfined liquids • Single biomolecules • Molecular machines
(Nano)Confined liquids- Why? • Biology:
• Biomolecular structure, • biochemical processes, • thermal reservoir, thermal noise (molecular machines) • Interactions with biological surfaces • Origin of Life
• Nanoscience: • Local order creation – influence on self-assembly • Flow through narrow channels, nanofluidics • Nanotribology • Colloid science • Phase transformations on surfaces • Wetting
•Oil & gas extraction
Water, water everywhere: The crowded cell
David Goodsell: “The machinery of life”
Water and Life • All known life relies on water • Solvent for biologically important molecules • Determines structure of macromolecules (hydrophilic, hydrophobic)
• Drives self-assembly, protein folding etc. • Transport medium, dissolves ions • Thermal reservoir & source of thermal noise
Geology, 2005
Water in porous rock, oil recovery
What happens when you squeeze a liquid to just a few nanometers?
Measuring mechanics at the nanoscale: The Atomic Force Microscope (AFM)
What kind of forces could we expect at the nanoscale (molecules) ? ..and how could we measure such forces ? Need: ‘Back-of-the-envelope’ calculation
Energy of a weak bond ≈ 0.1 eV ≈ 10-20 J
Length of a bond: a few Angstrom = 0.1 nm = 10-10 m
Work to break a bond = Energy of bond = Force x Distance, Therefore: Force = Energy/Length of bond ≈ 10-20J/10-10m = 10-10 N = 100 pN
Stiffness of ‘spring’ of bond: Hooke’s law: F = - k x Therefore: k ≈ 10-10 N/(10-10 m) = 1 N/m!
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Homebuilt AFM
Measurement procedure
Oscillate at small amplitude: 0.05-0.2 nm
Move at low speed: 0.2 - 1.8 nm/s
Measure amplitude & phase
Our measurements: Probing dynamics
Measure amplitude & phase
Stiffness & damping
Mechanical relaxation time: low for liquid, high for solid
R
h
RtR
h
2 Å/s = 1 ft/50yrs
8 Å/s
14 Å/s
Silicon
What is so special about the nanoscale?
Breakdown of continuum picture
• When liquid is confined, motion is restricted to quasi 2D
• For liquid to move out of the way, many molecules have to move collectively.
A simple argument…
N
Np
p
2
1
2
11
molecules47
1
10
0
14
0
N
sp
s
N
N
Collective dynamics gives long relaxation times
What is so special about the nanoscale? Can see onset of collaborative effects which lead to long times
scales
Fast
Slow
Water, compressed at 0.2 nm/s
0.00E+00
5.00E-04
1.00E-03
1.50E-03
2.00E-03
2.50E-03
3.00E-03
3.50E-03
4.00E-03
0.00E+00 1.00E-09 2.00E-09 3.00E-09 4.00E-09 5.00E-09
Vis
cosi
ty (
Pa
s)
Tip-surface separation (m)
Water, compressed at 1.4 nm/s
0.00E+00
2.00E-04
4.00E-04
6.00E-04
8.00E-04
1.00E-03
1.20E-03
1.40E-03
1.60E-03
0.00E+00 1.00E-09 2.00E-09 3.00E-09 4.00E-09 5.00E-09
Vis
cosi
ty (
Pa
s)
Tip-surface separation (m)
Changing gear….
1.75 m A few cm
X 100
20 microns
1000x
0.2-20 nm 1000 X
AFM: Pulling Molecules
EA DG ki
k0
Measurable Parameters:
Activation barrier height, E*
Position of activation barrier, x*
Shape of potential around Eb
Change in free energy/depth of energy well, DG
Stiffness of bond/ curvature of energy, ki
Off-rate at zero force, k0
Diffusion, friction, metastable states
Dissipated work, Wdis
Eb
Wdiss
x*
Polymer linker
(PEG)
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Single molecule
Protein Interactions
Mechanics, dynamics and regulation of biological macromolecules and
molecular assemblies
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Single molecule
0 20 40 60 80 100 120
-200
0
200
400
600
p
N)
distance(nm)
x*
Umax
Effect of applied force: Lowering of activation barrier
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Single molecule
0 200 400 600 8000
10
20
30
40
50
0 200 400 600 8000
10
20
30
40
50
0 200 400 600 8000
10
20
30
40
50
0 200 400 600 8000
10
20
30
40
50
0 200 400 600 8000
20
40
60
0 200 400 600 8000
20
40
60
0 200 400 600 8000
10
20
30
40
50
0 200 400 600 8000
20
40
60
80
Monte-Carlo simulations of rupture events – Which tail is it?
Multiple bonding ? Heterogeneous bonding?
-500 0 500 1000 1500 2000 25000.0000
0.0002
0.0004
0.0006
0.0008
0.0010
0.0012
0.0014
pN
-1
Unibinding force (pN)
0 500 1000 1500 2000 2500 30000.0000
0.0002
0.0004
0.0006
0.0008
0.0010
0.0012
0.0014
0.0016
0.0018
pN
-1
Unbinding force (pN)
a b
Figure X1: AFM measurements of binding between TIMP1 (Fig. a) and TIMP 2 (Fig. b) on live cells expressing MT1-MMP (inset
to Fig. b). Fig. a shows predominantly non-specific binding (maximum probability for zero force) of TIMP1, while b shows strong
affinity of TIMP2 to MT1-MMP (most probable force ~500 pN). Inset a: Control: Binding probability for TIMP2 on cells without
MMP (EV) and with MMP (GPI) shows that about 60-70% of binding events are specific. For TIMP1 no significant difference is
observed.
Single protein force measurements on live cancer cells
A new instrument • Olympus IX-81 Fluorescence
microscope w. epifluorescence, TIRF, phase, DIC, lasers: 405, 488, 561, 640 nm, two cameras, one very high resolution, dual view
• Bruker Catalyst AFM w. peak force
imaging, perfusion capability, EasyAlign setup etc.
Force (recognition) imaging of (PS + LBP) membranes using a cantilever functionalized with
MEMO-linker molecules and αLBP antibodies.
Roes S et al. J. Biol. Chem. 2006;281:2757-2763
©2006 by American Society for Biochemistry and Molecular Biology
Total Internal Reflection Fluorescence (TIRF)
Single molecule
Single myosin, imaged with TIRF:
When a molecule becomes a machine
Fastest AFM in the World: Toshio Ando, Kanazawa University, Japan
~ 100 nm
150 ms/frame
What is so special about the nanoscale?
(4) Predominance of thermal noise
Feynman’s Ratchet
The ratchet, the reset, and the second law
Needs a reset step...
... powered by a supply of energy ... and an asymmetric energy landscape.
Hill 1938, Frog muscle
-5
0
5
10
15
20
25
0 1 2 3 4 5 6
Speed v
Simulation of damped diffusion on an oscillatory tilting sawtooth potential (stochastic differential equation, Markov process)
Do actual molecular machines really work like this?
Conclusions and Acknowledgments • AFM is a versatile tool to measure nanomechanical properties of nanosystems
• Liquids deviate strongly from bulk behavior when nanoconfined :
• Ordering • Divergence of relaxation time scales • Altered viscoelastic behavior • New, surprisingly complex phenomena
• AFM is a useful tool for single-molecule studies on live cells and can be combined
with optical methods. Acknowledgments: My students: Shah Khan, Venkatesh Subba-Rao, Essa Mayyas, George Matei, Ed Kramkowski, David Wilson, Anwesha Sakar. Post-docs: Shivprasad Patil, Mircea Pantea. Funding: NSF-DMR 0804283, WSU Nano@Wayne
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