affinity chromatography: homemade microcystin-sepharose column cindy lee may 1, 2006
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![Page 1: Affinity Chromatography: Homemade Microcystin-Sepharose Column Cindy Lee May 1, 2006](https://reader035.vdocuments.net/reader035/viewer/2022062407/56649d2c5503460f94a01eb2/html5/thumbnails/1.jpg)
Affinity Chromatography:Homemade
Microcystin-Sepharose ColumnCindy Lee
May 1, 2006
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Affinity Chromatography
Molecule of Interest Ligand Matrix
Protein Phosphatase-1
Sepharose
Microcystin-LR
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Protein Phosphatase-1 (PP1)
Protein Phosphatase-1
Part of the Ser/Thr Phosphatase Family
Important enzyme in the regulation of many cellular pathways Involved in reversible
phosphorylation of proteins Must counterbalance the activity
of several different protein kinases
Tightly regulated by regulatory subunits
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What is Microcystin? Cyclic heptapeptide Hepatotoxin found in
blue-green algae (cyanobacteria)
Potent inhibitor of protein phosphatase-1 (PP1) Immediate binding Covalent binding to
Cys-273 of PP1
>50 kinds MC-LR and MC-LL
are the most common
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C-terminalgroove
Hydrophobicgroove
AcidicGroove
RVXF MotifBinding Site
Microcystin-LR Bound to PP1
Binds to active site of PP1 RVXF motif binding site exposed
Goldberg et al. Nature 376 745-735 (1995)
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Uses of Microcystin-Sepharose Affinity Chromatography Purify PP1 Bind regulatory proteins of PP1 to PP1
that is bound to the columnRVXF motif binding site is exposed
Purify PP2A Part of the same Protein Ser/Thr phosphatase
family as PP1Also inhibited by microcystin In the literature, there were problems with
eluting the PP2A
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How to Create a Microcystin-Sepharose Column Step 1: Obtain Microcystin-LR (MCLR) Step 2: Add linker to MCLR
MCLR + Step 3: React MCLR with the linker to
N-hydroxysuccinimide (NHS) activated-Sepharose
+
Moorhead et. al. FEBS Letters 356 46-50 (1994)
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0 50 100 150
0.300
0.200
0.100
0.000
Microcystin-LR Standard
121.04min
Ab
sorb
ance
(2
06n
m)
Retention Time (min)
HPLC:Buffer A: 0.1%TFA/H2OBuffer B: 0.1%TFA/AcetonitrileRate: 0.3% B/min over 3 hours
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0 50 100 150
0.300
0.200
0.100
0.000
121.27 min
Step 1: Obtain Microcystin-LRA
bso
rban
ce (
20
6nm
)
Retention Time (min)
-fractions were collected and pooled from an HPLC purification of microcystin from cyanobacteria from Little Beaver Lake in 1992
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121.27 min
121.04 min
Standard
Pooled Fractions
Comparison: Standard vs Pooled Fractions
0 50 100 150Retention Time (min)
0.200
0.100
0.000
0.100
0.000
Ab
sorb
ance
(2
06n
m)
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Step 2: Add Linker to MCLR
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113.89;115.02 min
121.27 minMicrocystin
pool
After Reaction with Linker
0 50 100 150Retention Time (min)
0.200
0.100
0.000
0.400
0.200
0.000
Ab
sorb
ance
(2
06n
m)
Comparison: Before vs After Reaction with Linker
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Step 3: React MCLR with Linker to NHS-activated Sepharose
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After reaction with linker
Supernatant after reaction
with NHS-activatedSepharose
Comparison: Before vs After Reaction with Sepharose
0 50 100 150
0.400
0.200
0.000
0.100
0.000
Ab
sorb
ance
(2
06n
m)
Retention Time (min)
113.89;115.02 min
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Determine the Binding Capacity of the Microcystin-SepharoseAdd increments of PP1 to the resinSupernatant was tested for activity and used to
determine the amount of PP1 that bound
Binding Experiments with PP1
repeatAdd PP1
Note: Tris-Sepharose resin was used as the “Control “ and ran in parallel with Micrystin-Sepharose resin
control Micrcystin-Sepharose
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50L of resin contains ~14.3g of MCLR:
How much PP1 can 1mg of MCLR bind?59gPP1 * 1mgMCLR / 14.3gMCLR = 4.2mgPP1
Amount of PP1 Bound After Each Addition of 17.5 1 50g of PP to -L of Microcystin
Sepharose Resin
0
2
4
6
8
10
12
14
16
18
1 2 3 4
#Addition
1 Amount of PP
Unbound
Bound
Total PP1 Bound = 14.4+15.2+16.1+13.3 = 59g
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Determine the Binding Capacity of the Microcystin-Sepharose
Using Microcystin-Sepharose for purifying PP1 1) Bind PP1 to resin 2) Wash resin (0.3M NaCl) 3) Elute PP1 (3M NaSCN)
Binding Experiments with PP1
WashAnd
removesupernatant
Add PP1
control Micrcystin-Sepharosel
Elute
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(kDa)
75
50
37
25
20
15
10
PP1 Purification Experiment
MWmarkers
PP1For
binding
Ctrl Resin
Ctrl Resin
MC-Seph Resin
MC-Seph Resin Ctrl
MC-Seph
After incubation with PP1
After Elution with 3M NaSCN
Elution(3M NaSCN)
Ctrl = control:Tris-SepharoseMC-Seph = Microcystin Sepharose
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PP2A Purification Experiment
(kDA)
75
50
37
25
20
15
10
MWmarkers
PP2AFor
binding
Ctrl Resin
Ctrl Resin
MC-Seph Resin
MC-Seph Resin Ctrl
MC-Seph
After incubation with PP2A
After Elution with Okadaic Acid
Elution(Okadiac Acid)
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Future Work…
Repeat Experiments with PP2AGet a more definite result
Try binding regulatory proteins to PP1 that is bound to the column
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Acknowledgements
Holmes LabEspecially Marcia Craig