alejandro strachan - illinois...molecular dynamics explicitly solve the dynamics of all atoms of the...
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![Page 1: Alejandro Strachan - Illinois...Molecular dynamics Explicitly solve the dynamics of all atoms of the material of interest Newton’s equations of motion with forces obtained from the](https://reader036.vdocuments.net/reader036/viewer/2022070111/604efe1fdd3c1a4dec3d7534/html5/thumbnails/1.jpg)
Molecular dynamics modeling of thermalMolecular dynamics modeling of thermaland mechanical propertiesand mechanical properties
Alejandro StrachanSchool of Materials Engineering
Purdue [email protected]
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Materials at molecular scalesMaterials at molecular scales
Molecular materials Ceramics Metals
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Materials properties chartsMaterials properties charts
Materials lookvery different
Materials propertiesvary by many orders
of magnitude
Composition/chemistryMicrostructure
A variety ofmechanisms governmaterials behavior
Materials Selection in Mechanical Design (3rd edition)by MF Ashby, Butterworth Heinemann, 2005
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Multiscale Multiscale modeling of materialsmodeling of materials
L e n g t h
T i m e
nanometer mm
picosec.
nanosec.
microsec
femtosec.
Molecular dynamics
micron
Mesoscale
meters
second
QuantumMechanics
MacroscaleElectrons Atoms Mesoparticles Elements
•Understand the molecular level origins of materials behavior•Predict the behavior of materials from first principles
•Help design new materials or devices with improved performance
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Molecular dynamicsMolecular dynamics
Explicitly solve thedynamics of all atomsof the material ofinterest
Newton’s equations of motion
with forces obtained fromthe inter-atomic potential
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MD: structure of an MD codeMD: structure of an MD code
Initial conditions[ri(0), vi(0)]
Calculate forces at current time [Fi(t)] from ri(t)
Integrate equations of motion r(t) _ r(t+Δt)v(t) _ v(t+Δt)
t_t+Δt
Save properties
Done?
EndY
No
Output file
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MD: integrating the equations of motionMD: integrating the equations of motion
( ) ( ) ( ) ( ) ( ) ( )
( ) ( ) ( ) ( ) ( ) ( )432
432
61
21
61
21
tttrttrttrtrttr
tttrttrttrtrttr
iiiii
iiiii
ΔΟ+Δ−Δ+Δ−=Δ−
ΔΟ+Δ+Δ+Δ+=Δ+
&&&&&&
&&&&&&
Taylor expansion of positions with time
The Verlet algorithm
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MD: thermodynamic ensemblesMD: thermodynamic ensembles
i
ii
ii
mFu
ur
=
=
&
&EFiRi −∇=with
Temperature: ( ) ( )time
N
iitimetmutKNkT ∑
=
==1
2
21
23
Instantaneous temperature (T*):
( ) ( ) ( )∑=
==N
ii tmutKtNkT
1
2*
21
23
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MD: isothermal molecular dynamicsMD: isothermal molecular dynamics
i
ii
ii
mFu
ur
=
=
&
&
Berendsen’s thermostat Nose-Hoover thermostat
i
ii
ii
mFu
ur
=
=
&
&
How can we modify the EoM so that they lead toconstant temperature?
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MD applications: meltingMD applications: melting
Luo et al. PRB 68, 134206 (2003)
Simples and most direct approach: •Take a solid and heat it up at constant pressure until it melts•Then cool the melt until it re-crystalizes
ProblemsSuperheating of the solid &undercooling of the liquid
Why?
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MD applications: meltingMD applications: melting
2-phase MD simulations•Place liquid and solid in one cell•Run NPT simulations at various T
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MD applications: meltingMD applications: melting
2-phase MD simulationMelting at ambient pressure •Simulation: 3150±50 K (4%)•Experiment: 3290±50 K
Pre
ssur
e ( G
Pa )
Free electrons
Band electrons
Cohen ab initio HugoniotUsing exper. pressure
Experiment shock meltingBrown and Shaner (1984)Temperature for Hugoniot
2-phase MD simulation
Temperature (K)
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MD applications: MD applications: nanonano-mechanics of deformation-mechanics of deformation
Mechanisms of plastic deformation – Materials strength
Edge dislocationScrew dislocation
Burgersvector
Slip plane
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MD applications: MD applications: nanonano-mechanics of deformation-mechanics of deformation
ε=0.0 ε=0.07 ε=0.09 ε=0.59 ε=0.74
initialelastic
deformationplastic
deformation
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MD applications: MD applications: nanonano-mechanics of deformation-mechanics of deformation
•NiAl alloy: plastic deformation induced by shock compression•MD enables a detailed characterization of the mechanisms of plasticdeformation
Piston
NiAl target
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N N
N
NO2
NO2O2N
MD applications: condensed-matter chemistryMD applications: condensed-matter chemistry
Thermal and shock induced decomposition andreaction of high energy materials
Plastic bonded explosives•Energetic material particles in a rubbery binder•C-NO2 (TATB, TNT)•N-NO2 (HMX, RDX) •O-NO2 (PETN)•Secondary explosives (initial reactions are endothermic)•Sensitivity to undesired detonation
Propellants•Nitramine used in propellant composites•Secondary HE _ exothermic reactions far from the surface _lower temperature at burn surface•Large specific impulse (Isp)
RDX
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MD applications: decomposition of RDXMD applications: decomposition of RDX
32 RDX molecules on 32 RDX molecules
pu pu−
Shock decomposition
Strachan et al. Phys. Rev. Lett. (2003)
Thermal decomposition
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MD applications: computational materials designMD applications: computational materials design
strain
Zero fieldElectric field
T and Gbonds
All transbonds
Electric field
All transbonds
Strachan and Goddard, Appl. Phys. Lett (2005)
•Polymer-based nano-actuator•Make use of structural transition to achieve large strains
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MesoscaleMesoscale: beyond MD: beyond MD
•Particles with long range interactions (electrostatics)•Short time step necessary
•C-H bond vibrational period ~10 fs = 10-14s•MD time-step: <1 fs
•MD is always classical (CV~3Nk)
Mesodynamics•Mesoparticles represent groups of atoms•Molecules or grains in a polycrystalline solid (B.L. Holian)
All atom MD is very expensive
•Mesopotential (effective interactions between mesoparticles)•Thermal role of implicit degrees of freedom
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MesoscaleMesoscale: temperature rise during shock loading: temperature rise during shock loading
Molecular: c.m. velocity of moleculesaround translationInternal: atomic velocities around c.m.vel. of molecules
Molecular
Internal
time=0.8 ps
time=1.6 ps
time=3.2 ps
Test case: shock on acrystalline polymer
All atom MD simulation
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MesoscaleMesoscale: limitation of traditional approach: limitation of traditional approach
•Energy increase due to shockwavedescribed accurately•Reduced number of modes to sharethe energy
Large overestimationof temperature
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i
ii
ii
mFu
ur
=
=
&
&
MesoscaleMesoscale: new approach: new approach
( )( )∑
∑=><
j ijj
j ijjji rwm
rwumu
( )( )∑
∑ ><−=
j ij
j ijijjmesoi rw
rwuumkT
2
3
( )iiii
ii
iiii
uumFu
Fur
><−−=
+=
η
χ
&
&
Local mesoparticle velocity:
Local mesoparticle temperature:
Change in mesoparticle energy:
Change in internal energy so that total energy is conserved:
Equations of motion:
distance
wei
ght
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•Couple through the position update equation
MesoscaleMesoscale: New equations of motion: New equations of motion
−∝
0
int
TTT i
mesoi
i γχ
i
ii
iiii
mFu
Fur
=
+=
&
& χ
iiii
ii FF
CTE ⋅== χint
intint
&&
Key features•Total energy (meso + internal) is conserved•c.m. velocity is conserved•Galilean invariant•Correct description of the ballistic regime
Strachan and Holian (PRL, Jan 2005)
•Finite thermostats
•Allow energy exchange between mesoparticles and internal DoFs•Couple local meso temperature with internal temperature
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MesodynamicsMesodynamics: thermodynamically accurate: thermodynamically accurate
•Thermodynamically accurate mesoscale description•Thermal role of implicit degrees of freedom described by theirspecific heat
•Can incorporate CV based on quantum statistical mechanics
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Running MD @ Running MD @ nanoHUBnanoHUBThe Network for Computational Nanotechnology at Purduedeveloped the nanoHUB (www.nanohub.org)•nanoHUB provides onlineservices for research, educationand collaboration•The materials simulation toolkitat nanoHUB•Developed by the Strachangroup•Enables running real MDsimulations using simply a web-browser•All you have to do is register tothe nanoHUB (preferably beforelab session)