american gut - omicron
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- 1. theRNAfortaxonomicubiquitousconserved and
- 2. A microbe dominated worldThe universal nature of biochemistry. Pace NR.Proc Natl Acad Sci U S A. 2001 Jan 30;98(3):805-8.
- 3. A microbe dominated worldLozupone and Knight PNAS. 2007 Jul 3;104(27):11436-40
- 4. A microbe dominated worldLey et al Nat Rev Microbiol. Oct 2008; 6(10): 776788
- 5. How human are we, really?Hamady, 2009, PhD thesis
- 6. How human are we, really?Hamady, 2009, PhD thesis
- 7. How human are we, really?Hamady, 2009, PhD thesis
- 8. Costello et al. Science 326, 1694 (2009)
- 9. Photo credit: Steve Miller, CIRES
- 10. https://commons.wikimedia.org/wiki/File:Wallacea.png
- 11. Fierer et al. PNAS. 2010 Apr 6;107(14):6477-81
- 12. Fierer et al. PNAS. 2010 Apr 6;107(14):6477-81
- 13. Yatsunenko et al. Nature. 2012 May 9;486(7402):222-7
- 14. Yatsunenko et al. Nature. 2012 May 9;486(7402):222-7
- 15. HMP HMPYatsunenko et al. Nature. 2012 May 9;486(7402):222-7
- 16. Koeing et al. Proc Natl Acad Sci U S A. 2011 Mar 15;108
- 17. Video fun time!Full version here: http://www.youtube.com/watch?v=Pb272zsixSQ
- 18. HMP: Human Microbiome Project (2012, Nature 486: 202-214) GG: Global Gut (2012, Nature 486: 222-228) PGP: Personal Genome Project (unpublished) AGP: American Gut Project (unpublished)http://microbio.me/americangut/img/mod1_main.pdf
- 19. http://microbio.me/americangut/img/mod1_main.pdf
- 20. ICU Microbiome pilot International Nutritional Survey 5 sites around the world Multiple time points Rich patient metadata
- 21. Autism spectrum cohort of the American Gut 269 families to receive samples Conjunction with ASD-clinicians Donations for ASD-affected and neurotypical siblingscovered by Jack Gilbert
- 22. *
- 23. Analyses are executable, reproducible, andBSD-licensed
- 24. An Introduction to AppliedBioinformatics
- 25. The American Gut ConsortiumThe Knight LabProf. Rob KnightProf. Greg CaporasoProf. Jack GilbertProf. Tim SpectorDr. Victoria VazquezProf. Paul WischmeyerDr. Antonio GonzalezDr. Gail AckermannYoshiki Vzquez-BaezaDr. Jess MetcalfDr. Katie [email protected]: @mcdonadtGithub: @wasadewww: http://wasade.github.io
- 26. Links and questionsProjects of interest: Earth Microbiome Project (http://earthmicrobiome.org) American Gut Project (http://americangut.org) British Gut Project (http://britishgut.org)[email protected]: @mcdonadtGithub: @wasadewww: http://wasade.github.ioKey labs: Knight Lab (http://knightlab.colorado.edu) Caporaso Lab (http://caporasolab.us) Spector Lab (http://www.tim-spector.co.uk/)Education: Courseras Gut Check (https://www.coursera.org/course/microbiome) Intro. to Appl. Bioinformatics (http://caporasolab.us/An-Introduction-To-Applied-Bioinformatics/)Useful software projects: Quantitative Insights into Microbial Ecology (http://qiime.org) Qiita (http://qiita.colorado.edu)* biocore (http://github.com/biocore) scikit-bio (http://scikit-bio.org) EMPeror (http://emperor.colorado.edu)*Soon to be opened for the general public