antabif at bncar

Biodiversity Information Networks

Free and Open Access to Antarctic Biodiversity data

www.biodiversity.aqwww.scarmarbin.be

SCAR-MarBIN and ANTABIFAnton Van de Putte & Bruno Danis

Friday 30 March 12

SCAR-MarBIN & ANTABIF

• www.scarmarbin.be: marine biodiversity information network

• www.biodiversity.aq: biodiversity information facility

• Core funding: BELSPO.be (until December 2012)

• International Polar Year 2007/08

• Census of Antarctic Marine Life

• Ocean Biogeographic Information System

• Global Biodiversity Information NetworkFriday 30 March 12

• Build an electronic ecosystem

• Offer free and open access to data and technology

• Expose all the (biodiversity) data and metadata, in multiple contexts

• Remain community-driven, and collaborative

• Adopt strong standardization

• Work for science, conservation, management

General philosophy

Friday 30 March 12

Who’s in?

Friday 30 March 12

webportal (s)

IPT.BIODIVERSITY.AQ

AFG.BIODIVERISTY.AQ

WWW.BIODIVERSITY.AQ

DATA.BIODIVERSITY.AQ/DATA.SCARMARBIN.BE

Friday 30 March 12

ANTABIF technological ecosystems:Language: Ruby

Design patterns: MVC-ORMFramework: Rails(ActiveRecord) and YUI

Search engine: Full text (Elasticsearch-Lucene)Database: PostGresql GIS server: Geoserver

Spatial database: PostGISMapping client: OpenLayers

Web services: RESTish (all resources)Protocoles: DIF, dwcore, dwc archive, Tapir…etc

GBIF tools : HIT,IPTOS: FreeBSD

Hosting: BBPF (ULB/VUB joint IT Center)Metadata systems: GCMD (mirrored)N

uts

and

bolts

ANTABIF:100% Open Source

Friday 30 March 12

WWW.BIODIVERSITY.AQ

• Blog

Friday 30 March 12

IPT.BIODIVERISTY.AQ

Friday 30 March 12

IPT.BIODIVERSITY.AQ

• Submit data online /Data publication

• Data types

• Taxonomy

• Occurence

• Metadata

• Darwincore archive

Friday 30 March 12

DarwingCore

• Body of Standards (TDWG)

• Facilitate sharing of biodiversity data

• Discovery, retrieval, integration

• Core and extension

• Participatory process

Friday 30 March 12

DarwinCore Archive

Columns  in  extensions  are  mapped  to  Darwin  Core  using  the  meta.xml  file

Multiple extensions are available

Friday 30 March 12

DarwinCore Archive

h7p://rs.gbif.org/extension/

Many extensions are available

Friday 30 March 12

Data flow

Your data

standardize

DwC-A

upload publish

IPT ANTABIF

publish

Data Paper

(your point of view)

Friday 30 March 12

Data flow(our point of view)

Friday 30 March 12

DATA.BIODIVERSITY.AQ

Friday 30 March 12

DATA.BIODIVERSITY.AQ

taxonomy, biogeography

vizualisation

open access

860,458 visitors

7,465,974 hits

>50,000,000 dld records

ANTABIF coming up

Friday 30 March 12

DATA.BIODIVERSITY.AQ

all taxa

all species

valid species

0 3.750 7.500 11.250 15.000

• The first RAMS

• Board of 60+ editors

• Feeds WoRMS, CoL and EoL

• 17,098 taxa (RAMS)

• Building a dynamic RAS

• 24,248 taxa (RAS)

Friday 30 March 12

[results]: geospatial data

1,288,441 records196 datasets

119 geodatasets5,235 taxa

Feeds OBIS, GBIFDownloadable

WebGISWebservices

Friday 30 March 12

Antarctic Field Guidesafg.biodiversity.aqafg.scarmarbin.be

• Identification aid

• Best available pictures

• Descriptions

• Dynamically built from various sources

Friday 30 March 12

Antarctic Field Guides

Friday 30 March 12

Friday 30 March 12

Friday 30 March 12

Friday 30 March 12

Projects... coming up

Georeferenced genetic data: CAML barcoding

Polar Macroscope working group: BiPolar analyses

Southern Ocean Biogeography Atlas: interactive Atlas

Friday 30 March 12

How do we X-link?

• exporting the design models: standards and protocols, tools, data flows, promotion

• help SCAR programs wherever needed (and to the best extent we can do this realistically...)

• dynamic antarctic2100/data atlas??

Friday 30 March 12