n.clarki ru30 l5b tetraloop n.clarki ru42 l5b tetraloop ...10.1186/1471-2148-6-39... · n. clarki...

WU

G

AACA

UUGU

AA

GUG

C

U

G

GC

CGC

A

U

G C

GC

UA

GA AA

UA

C

AA

UU

GUCUG

GAC

UU

AA

P6

5‘

3‘

3‘

5‘

L5b

NaGIR1 +NaHEG

NG498

U

G

AACA

UUGU

AA

GUG

C

G

CG

A

U

GC

G

A

AA

A

C

AA

UU

C

CG

G

GC

GU

C

P6

5‘ 3‘

L5b

NaGIR1 +NaHEG

N. pringsheimi 1D

G C

A U

N. clarki RU42N. clarki RU30

NG358

G

AACA

UUGU

AA

GUG

C

GAG

A

GC

G

A

AA

U

AA

UU

C

UG

G

AC

G C

P6

5‘ 3‘

L5b

NaGIR1 +NaHEG

G C

A U

NG647NG393

U A

U

GG

AG

L5b

N. italica AB-TF-3

G

AACA

UUGU

AA

GUG

C

GAG

A

GC

A

AA

UU

C

CG

G

GC

G A

P6

5‘ 3‘

NaGIR1 +NaHEG

G C

A U

U A

U

AU

A

A

L5b

N. philippinensis RJTM

G

AACA

UUGU

AA

GUG

C

GAG

A

GC

A

AA

UU

C

CG

G

GC

G A

P6

5‘ 3‘

NaGIR1 +NaHEG

G C

A U

U A

UA

G

AACA

UUGU

AA

GUG

C

A

A

GC

C

AA

UU

C

UG

G

AC

G C

P6

5‘ 3‘

NaGIR1 +NaHEG

G C

A U

U A

U

N. andersoni A2

GU

AUU

AC

C

L5b

U

C G

G CGC

G CUA

3‘ 5‘

C G

G CGC

G CUA

3‘ 5‘

C G

G CGC

G CUA

3‘ 5‘

C G

G CGC

G CUA

3‘ 5‘

C G

G CGC

G CUA

3‘ 5‘

C G

G

AACA

UUGU

AA

GUG

C

A

A

GC

C

AA

UU

C

UG

G

AC

G C

P6

5‘ 3‘

NaGIR1 +NaHEG

G C

A U

U A

U

N. jamiesoni T56E

AU

AUU

UA

A

L5b

U

G CGC

G CUA

3‘ 5‘

C G

G

AACA

UUGU

AA

GUG

C

A

GC

AA

UU

C

GG

G

CC

U A

P6

5‘ 3‘

NaGIR1 +NaHEG

G C

A U

U A

N. carteri NG055

AU

UU

U

A

L5b

U

A UGC

G CUA

3‘ 5‘

A U

U

AUAU

G

AACA

UUGU

AA

GUG

C

U

A

GC

U

AA

UU

UG

AC

U A

P6

5‘ 3‘

NaGIR1 +NaHEG

G C

A U

U G

U

N. martinezi NG872

AU

UAU

UA

U

L5b

A

A UGC

G CUA

3‘ 5‘

A U

N.sp. NG393 L5b tetraloop

N.sp. NG647 L5b tetraloop

N.pringsheimi 1D L5b tetraloop

N.italica AB-T-F3 L5b tetraloop

N.philippinensis RJTM L5b pentaloop

N.clarki RU30 L5b tetraloop

N.clarki RU42 L5b tetraloop

N.sp. NG358 L5b tetraloop

N.sp. NG498 L5b tetraloop

N.jamiesoni T56E L5b pentaloop

N.andersoni A2 L5b pentaloop

N.carteri NG055 L5b hexaloop

N.martinezi NG872 L5b pentaloop10 changes

100/100

100/100

100/100

100/100

100/99

-/-

100/100

100/90

100/87

-/-

GNRA-loop insertion

A

B