sw041.r1.trimmed.fastq fastqc report - start [banana slug … · 2015. 5. 12. ·...
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15-05-11 8:01 PMSW041.r1.trimmed.fastq FastQC Report
Page 1 of 12file:///Users/natashadudek/Desktop/SW041.r1.trimmed_fastqc.html#M11
FastQC Report Mon 11 May 2015SW041.r1.trimmed.fastq
Summary
Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content
Basic StatisticsMeasure Value
Filename SW041.r1.trimmed.fastq
File type Conventional base calls
Encoding Sanger / Illumina 1.9
Total Sequences 1449494
Sequences flagged as poor quality 0
Sequence length 29-76
%GC 43
15-05-11 8:01 PMSW041.r1.trimmed.fastq FastQC Report
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Per base sequence quality
Per tile sequence quality
15-05-11 8:01 PMSW041.r1.trimmed.fastq FastQC Report
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Per sequence quality scores
15-05-11 8:01 PMSW041.r1.trimmed.fastq FastQC Report
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Per base sequence content
15-05-11 8:01 PMSW041.r1.trimmed.fastq FastQC Report
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Per sequence GC content
15-05-11 8:01 PMSW041.r1.trimmed.fastq FastQC Report
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Per base N content
15-05-11 8:01 PMSW041.r1.trimmed.fastq FastQC Report
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Sequence Length Distribution
15-05-11 8:01 PMSW041.r1.trimmed.fastq FastQC Report
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Sequence Duplication Levels
15-05-11 8:01 PMSW041.r1.trimmed.fastq FastQC Report
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Overrepresented sequencesSequence Count Percentage Possible
Source
CCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACC 3639 0.2510531261253927 No Hit
GGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGG 3151 0.21738620511709603 No Hit
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Adapter Content
Kmer Content
15-05-11 8:01 PMSW041.r1.trimmed.fastq FastQC Report
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Sequence Count PValue Obs/Exp Max Max Obs/Exp Position
TCCCTAG 2395 0.0 21.991716 10
CCCTATG 900 0.0 21.112513 7
GGGATAA 10505 0.0 20.858673 1
AGGGTAA 10625 0.0 20.613134 9
TCCCTAT 2350 0.0 20.56874 6
GGTAATT 3110 0.0 20.472958 11
ATAACAG 11040 0.0 20.231508 4
CAGGGTA 10890 0.0 20.080917 8
ATCCCTA 7485 0.0 20.04141 9
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CGGTCCG 90 0.005637958 19.223375 34
GGGTAAT 10670 0.0 19.214022 10
GATAACA 11650 0.0 18.944563 3
ATTCCTA 480 0.0 18.749952 14
GGATAAC 11725 0.0 18.73808 2
ACAGGGT 11810 0.0 18.54484 7
CCCTAGT 1095 0.0 17.961618 11
AACAGGG 12395 0.0 17.750269 6
GGTAATC 2690 0.0 17.349354 11
CTGTTAT 8875 0.0 17.316301 4
CCTGTTA 8850 0.0 17.291075 3
Produced by FastQC (version 0.11.2)
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