an introduction to revbayes and graphical models
DESCRIPTION
An introduction to the Bayesian phylogenetics software program RevBayes. Tutorials for RevBayes can be found at http://revbayes.github.io/TRANSCRIPT
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Tracy A. HeathIowa State University
@trayc7
Michael J. LandisUniversity of California, Berkeley
@landismj
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Prior options in MrBayes v3.2
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Prior options in MrBayes v3.2
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Several software packages inphylogenetics are moving toward amore modular framework
• reuse code
• easier to extend existing modelsand implement new modelsthrough a rich, language-basedinterface
• provides a unified framework foranalyses under complex models
RevBayes
Bali-Phy
BEAST2
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Fully integrative Bayesian inference ofphylogenetic parameters
https://github.com/revbayes/revbayes
Development team
Höhna
Lartillot Huelsenbeck Ronquist
Landis Heath Boussau
& others...
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Graphical models provide tools forvisually & computationally representingcomplex, parameter-rich probabilisticmodels
We can depict the conditionaldependence structure of variousparameters and other random variables
Höhna, Heath, Boussau, Landis, Ronquist, Huelsenbeck. 2014.Probabilistic Graphical Model Representation in Phylogenetics.
Systematic Biology. (doi: 10.1093/sysbio/syu039)
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G M RBDefining the model in the Rev language
G M RBDefining the model in the Rev language
G M RBDefining the model in the Rev language
G M RBDefining the model in the Rev language
G M RBDefining the model in the Rev language
G M RBDefining the model in the Rev language
G M RBDefining the model in the Rev language
G M RBDefining the model in the Rev language