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    Alternative Candida albicansLifestyles: Growth onSurfaces

    Carol A. Kumamoto and Marcelo D. Vinces

    Department of Molecular Biology and Microbiology, Tufts University, Boston,Massachusetts 02111; email: [email protected], [email protected]

    Annu. Rev. Microbiol.2005. 59:11333

    First published online as aReview in Advance on

    May 2, 2005

    The Annual Review ofMicrobiology is online atmicro.annualreviews.org

    doi: 10.1146/annurev.micro.59.030804.121034

    Copyright c 2005 byAnnual Reviews. All rightsreserved

    0066-4227/05/1013-0113$20.00

    Key Words

    biofilm, tissue invasion, invasive growth, thigmotropism, hyphae

    Abstract

    Candida albicans, an opportunistic fungal pathogen, causes a widevariety of human diseases such as oral thrush and disseminated can-

    didiasis. Many aspects of C. albicans physiology have been studied

    during liquid growth, but in its natural environment, the gastroin-testinal tract of a mammalian host, the organism associates with

    surfaces. Growth on a surface triggers several behaviors, such asbiofilm formation, invasion, and thigmotropism, that are important

    for infection. Recent discoveries have identified factors that regulatethese behaviors and revealed the importance of these behaviors for

    pathogenesis.

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    Contents

    INTRODUCTION.. . . . . . . . . . . . . . . . 114

    SURFACES COLONIZED BYCANDIDA ALBICANS. . . . . . . . . . . 1 1 5

    MECHANISMS OF BIOFILMFORMATION AND

    DEVELOPMENT.. . . . . . . . . . . . . . 115Biofilm Formation on Implanted

    Medical Devices Results in

    Drug Refractory Infections . . . . 115Numerous Parameters Influence

    Biofilm Formation andStructure . . . . . . . . . . . . . . . . . . . . . . 116

    Multiple Mechanisms Contributeto the High Drug Resistance

    of Biofilm Cells . . . . . . . . . . . . . . . 116

    High Levels of Amino AcidBiosynthesis and Protein

    Synthesis in BiofilmC e l l s . . . . . . . . . . . . . . . . . . . . . . . . . . 1 1 7

    Defective Biofilm DevelopmentCaused by Mutations that

    Alter the Cell Surface and

    Compromise Adherence .. . . . . . 118Development of Animal Models

    for Biofilms . . . . . . . . . . . . . . . . . . . 118

    MECHANISMS OF INVASIVEGROWTH . . . . . . . . . . . . . . . . . . . . . . 119

    Tissue Invasion byC. albicans

    Hyphae Occurs on Epithelial,Epidermal, and Endothelial

    Surfaces DuringCandidiasis . . . . . . . . . . . . . . . . . . . . 119

    Protease and PhospholipaseActivities Contribute to

    Invasion of Host

    Tissue . . . . . . . . . . . . . . . . . . . . . . . . 119Filamentation During Invasive

    Growth is Promoted byPhysical Contact .............. 120

    Transcription Factors RegulatingInvasive Growth by Embedded

    C e l l s . . . . . . . . . . . . . . . . . . . . . . . . . . 1 2 0

    Signaling Pathways RegulatingInvasive Growth by Embedded

    C e l l s . . . . . . . . . . . . . . . . . . . . . . . . . 1 2 3Models for Invasion of Tissue

    Surfaces . . . . . . . . . . . . . . . . . . . . . . . 124

    GUIDANCE OF HYPHAE BYTHIGMOTROPISM . . . . . . . . . . . . 125

    C ONC LUS IONS .. . . . . . . . . . . . . . . . . . 1 2 6

    Nosocomial: aninfection thatdevelops within ahospital and isproduced by aninfectious organismacquired during thestay of the patient

    INTRODUCTION

    In the fourth century B.C., growth ofthe opportunistic fungal pathogen Candidaalbicans on the surface of human tissue wasnoted and the oral infection it causes, thrush,

    was described by Hippocrates. Since that

    time, the incidence of candidiasis has in-creased and C. albicans has become a sig-

    nificant nosocomial pathogen. The modern

    AIDS epidemic has created a population ofpatients susceptible to candidiasis; oral thrushis one of the most common opportunistic in-

    fections in AIDS patients (4).

    As an opportunist, C. albicans does notusually cause serious disease in immunocom-

    petent hosts, but immunodeficient hosts aresusceptible to infections ranging from su-

    perficial mucosal infections to invasive, life-threatening disease. Candida spp. rank among

    the four most common causes of bloodstreaminfections and cardiovascular infections in

    U.S. hospitals (18, 41). In neonatal intensivecare units, Candida spp. are an even more fre-

    quent cause of bloodstream infections (95).

    The advances of modern medicine have ledto larger populations of compromised patients

    susceptible to candidiasis, increasing the im-portance of C. albicans as a pathogen and

    providing impetus for the detailed study ofC. albicansbiology.

    As is typical for many microorganisms,C. albicans physiology has been frequentlystudied during growth in liquid culture. How-

    ever, in their natural environment, C. albicans

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    cells are commonly found in association

    with surfaces. Therefore, it is important tounderstand how C. albicans cells interact

    with surfaces and how the unique aspects ofgrowth on surfaces contribute to C. albicans

    pathogenicity. Several distinct C. albicans

    behaviors occur on surfaces, including

    biofilm formation, invasive growth, andthigmotropism. In this review we describethese behaviors and discuss the mechanisms

    that regulate them. Each behavior occursunder specific environmental conditions and

    is mediated and controlled by specific fungalproteins.

    SURFACES COLONIZED BYCANDIDA ALBICANS

    C. albicans is generally found as a commen-sal organism in association with a human or

    animal host. In one study, 7.1% of infants were colonized by Candida or other yeasts

    on the day of birth and 96% of infants wereorally colonized by approximately one month

    of age (94). In adults, gastrointestinal car-riage of Candida spp. is common (78). For

    example, fungi were found in 80% of fecal

    samples from healthy adults (37). Soll et al.(104) showed that several surfaces in the body

    can be colonized, including the vaginal wall,surfaces in the oral cavity, and the anorectal

    surface.Individuals carry a particular strain for

    long periods, but changes in the colonizing

    strain over time can also be detected (78). Asingle individual may carryunrelatedstrains at

    different sites (104), and changes in the colo-nizing C. albicansstrain have been observed in

    HIV-positive patients (109). Thus, coloniza-tion byC. albicansis not fixed and changes may

    occur during an individuals lifetime. Within the host, a population of com-

    mensal organisms is probably bound to mu-

    cosal surfaces. In mice orally inoculated withC. albicans, binding of yeast-form C. albicans

    cells to epithelial surfaces in the gastrointesti-nal tract was detected within 3 (82) or 72 h

    (51) postinoculation. Another yeast species,

    Biofilm: acommunity ofmicroorganismsattached to a surface,formingthree-dimensional

    structures containingexopolymeric matrixand cells thatexhibit distinctivephenotypicproperties

    Thigmotropism:the directionalresponse of a cell ortissue to touch, orphysical contact witha solid object

    Epithelial:pertaining to tissuethat forms the outersurface of the bodyand lines the bodycavities, and to maintubes andpassageways that leadto the exterior, suchas the lining of thegastrointestinal tract

    Torulopsis pintolopesii, naturally colonizes mice.

    This organism is found in layers bound tothe secreting epithelium of the stomach (97).

    These findings demonstrate the ability ofcommensal fungal organisms to adhere to tis-

    sue surfaces within the host.In summary, growth on a biological sur-

    face, especially in the mammalian gastroin-testinal tract, is part of the natural lifestyleof C. albicans. We discuss below how the in-

    teraction of C. albicans with a surface altersC. albicansbehavior andhow these effects con-

    tribute to disease.

    MECHANISMS OF BIOFILMFORMATION ANDDEVELOPMENT

    Biofilm Formation on ImplantedMedical Devices Results in DrugRefractory Infections

    A biofilm is a three-dimensional commu-nity of microorganisms embedded in an ex-

    opolymeric matrix and attached to a surface.Upon attachment, microorganisms undergo a

    change to a sessile (attached) lifestyle. Dental

    plaque is a well-known natural example of abacterial biofilm found in humans. C. albicans

    also forms a biofilm on dental enamel (61) aswell as on human heart valves, causing endo-

    carditis (29).From a human health perspective, biofilms

    areimportantbecause they form on implanted

    medical devices and result in infections thatare unusually refractory to antimicrobial ther-

    apy. Medical device infection contributes toabout half of all nosocomial infections (for

    review see Reference 54). Several million vascular and urinary catheters and tens of

    thousands of prosthetic heart valves are usedannually in the United States; approximately10% of infections linked to these devices are

    due to Candida spp. (54). For example, of theestimated80,000 bloodstream infections asso-

    ciatedwith central venouscatheters that occurannually in U.S. intensive care units, 11.5%

    are due to Candida spp. (54). The mortality

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    Quorum sensing:cell-density-dependentcommunication andcoordination ofmicrobial behavior

    via signalingmolecules

    rate for device-associated Candida infection is

    approximately 30% (54).Cells in a biofilm characteristically exhibit

    high resistance to antimicrobial drugs, andtherefore infected devices must usually be re-

    moved to cure the infection (54). For somedevices, removal necessitates major surgery

    and exposes patients to significant risks. As aresult, the ability of C. albicans to adhere toa medical device and form a biofilm resistant

    to antifungal agents represents an importantmedical challenge.

    Numerous Parameters InfluenceBiofilm Formation and Structure

    Studies have demonstrated that C. albicans

    biofilms form in several stages (21, 29). First,

    cells, typically yeast form, attach to a surface.Second, cells proliferate on the surface, form-ing microcolonies. Third, growth of cells,

    production of hyphae (filamentous forms of

    the organism), and secretion of exopolymericmatrix result in elaboration of the characteris-

    tic three-dimensional structure that is typicalof a biofilm. The exopolymeric matrix, com-

    posed of carbohydrates, proteins, and other

    unidentified components, surrounds the cellsin a mature biofilm (11).

    Numerous materials and growth mediasupport the growth of biofilms in the labo-

    ratory. The structure of the resulting biofilm,especially the proportions of yeast-form and

    hyphal-form cells, is strongly influenced by

    parameters such as medium composition,temperature, and the nature of thesubstratum

    (59). Mutants unable to form hyphae or yeast-form cells can nevertheless produce a biofilm,

    demonstrating that a specific morphology isnot strictly essential for biofilm formation

    (10). Because the proportions of the differ-ent morphological forms vary depending onenvironmental conditions, biofilm structure is

    highly adaptable.The content of exopolymeric matrix is also

    influenced by biofilm incubation conditions.Biofilms incubatedstatically contain relatively

    low amounts of matrix, whereas biofilms in-

    cubated with shaking produce higher lev-els of matrix (42). This effect of medium

    flow is also seen with bacterial biofilms (28).

    Thus, flow of the medium above the sur-face is another variable that influences biofilm

    structure.Quorum sensing alsoregulatesbiofilm for-

    mation. The quorum-sensing molecule far-nesol is produced continuously by growingC. albicanscells, accumulating to levels corre-

    lated with cell number, andacts as an inhibitorof germination, i.e., the yeast-to-hypha tran-

    sition (44). Incubation of cells in the presenceof farnesol leads to reduced biofilm formation

    (86). Farnesol also has deleterious effects on

    mature biofilms (86), suggesting that farnesolregulates biofilm stability as well as biofilm

    formation. Similar effects of quorum sensing

    on mature bacterial biofilms have been noted(106).

    A two-componenthistidinekinase, Chk1p,

    plays a role in the response of cells to far-

    nesol. chk1 mutant cells are insensitive to theeffects of farnesol on both germination and

    biofilm formation (58). Chk1p is a cytoplas-mic protein that probably functions together

    with currentlyunknown proteins to detect thefarnesol signal and produce the appropriate

    response.

    Thus, biofilms vary in themorphology andorganization of their cells and in their con-

    tent of extracellular matrix. The plasticity inbiofilm structure in response to medium com-

    position, the substratum, flow conditions, andquorum sensing suggests that biofilms located

    in different sites within the host or in associa-

    tion with different types of devices or surfacesare likely to differ in their properties.

    Multiple Mechanisms Contributeto the High Drug Resistanceof Biofilm Cells

    One of the most vexing characteristics ofbiofilms is their high-level resistance to an-

    timicrobial drugs (28, 29, 59). Drug resistancereflects a property of individual biofilm cells,

    since C. albicanscells released from disrupted

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    biofilms still exhibit substantial levels of resis-

    tance (8, 9, 85). In C. albicansbiofilms, resis-tance is probably not due to poor penetration

    of drugs into the biofilm structure (1); mu-tants that form structurally defective biofilms

    nonetheless exhibit high drug resistance (87).In the early stages of biofilm forma-

    tion, changes in gene expression contributeto resistance. Resistance to the antifungalfluconazole can be detected as soon as 2 h

    after adherence of C. albicans cells (71). Atthis early time point, resistance is strongly de-

    pendent on MDR1, which encodes a flucona-zole efflux facilitator. That is, an mdr1 null

    mutant biofilm is 16-fold more sensitive to

    fluconazole than is a wild-type biofilm. Dele-tion of CDR1 and CDR2, which encode ho-

    mologous drug efflux pumps, also decreases

    the resistance of adherent cells (71). Simi-lar results were obtained after 6 h of ad-herent growth, and increased efflux activity

    in biofilm cells was detected (74). Thus, the

    drug-resistant phenotype of biofilm cells atearly times after adherence results from ex-

    pression of drug efflux determinants. Over-expression of MDR1, CDR1, and CDR2 is

    also important for drug resistance in drug-resistant clinical strains (83).

    In mature biofilms (e.g., after 48 h of incu-

    bation) the mechanisms that confer drug re-sistance are different. Mature biofilms formed

    from mdr1 cdr1 cdr2 triple null mutantsor the various single and double mutants

    are highly resistant to drugs (74, 85). Con-

    sistent with these observations, expressionof the drug efflux determinants in mature

    biofilms is not high (34, 74) and efflux ac-tivity of mature biofilms is not higher than

    the activity in planktonic cells (74). Theseresults argue against a role for the efflux

    determinants in drug resistance in maturebiofilms.

    Decreased membrane ergosterol content

    (74) and altered expression of ergosterolbiosynthetic genes (34) in mature biofilm cells

    have been noted. Therefore, increased drugresistance in mature biofilms may be related

    to an alteration in membrane sterol content.

    Altered membrane composition could resultin changes in membrane properties such as

    decreased permeability to drugs, leading to

    higher drug resistance. An alternative model has proposed that

    most Pseudomonas aeruginosa cells in abiofilm exhibit similar antibiotic resistance as

    stationary-phase planktonic cells but that thebiofilm also contains a population of highly

    resistant persister cells. The persister cells

    are not mutants but rather wild-type cellswhose physiological state allows them to sur-

    vive antibiotic treatment (64, 105). By sur-viving antibiotic treatment, the persister cells

    allow recovery of the population after an-tibiotic treatment is discontinued. Although

    the existence of persister cells in C. albicans

    biofilms has not been tested directly, there is

    evidence of cellular heterogeneity in C. al-bicans biofilms (108), and thus this mecha-nism could also contribute to biofilm drug

    resistance.In summary, multiple mechanisms con-

    tribute to the increased drug resistance ex-

    hibited by biofilms. Because drug resistancemechanisms seen in early biofilms differ

    from those conferring resistance in maturebiofilms, strategies designed to block early

    biofilm formation may differ from strategies

    that would be effective for eliminating maturebiofilms.

    High Levels of Amino AcidBiosynthesis and Protein Synthesisin Biofilm Cells

    To understand the distinctive biofilm lifestyleat the molecular level, microarray studies of

    gene expression in C. albicans biofilm cellshave been conducted (34). Results revealed

    that, in comparison to postlogarithmic plank-tonic cells that had been grown for thesame length of time, cells in biofilms express

    higher levels of genes involved in amino acidand nucleotide metabolism, protein synthe-

    sis, other metabolic functions, and subcellularlocalization. Garcia-Sanchez et al. (34) pro-

    posed that biofilms require high-level protein

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    biosynthesis, necessitating increased amino

    acid biosynthesis.Interestingly, analyses of gene expression

    or protein composition in bacterial biofilmcells compared with postlogarithmic plank-

    tonic cells grown for the same length of timeshowed some similarities to the results ob-

    tained with C. albicans biofilms (98, 111).Among the proteins or transcripts of genespresent at higher concentration in bacterial

    biofilm cells were several gene products in-volved in the synthesis of amino acids and

    nucleotides or in protein translation. How-ever, when bacterial biofilm cells were com-

    pared with planktonic cells that were in the

    exponential growth phase, these differencesin gene expression were not observed (98).

    These results imply that biofilms contain cells

    whose protein synthesis machinery is func-tioning at the level seen in exponential-phasecells, even though the biofilm has been devel-

    oping for a long period.

    Defective Biofilm DevelopmentCaused by Mutations that

    Alter the Cell Surface andCompromise Adherence

    Several mutations that reduce biofilm devel-

    opment by compromising the first step inbiofilm formation, adherenceto surfaces, have

    been studied. One of these mutations affectsEFG1, a major regulator of hyphal develop-

    ment (107). Efg1p regulates numerous genes

    whoseproducts include many cell surface pro-teins (62, 77, 103). As a result of the cell

    surface defect and the defect in productionof hyphae, it is not surprising that efg1 null

    mutants are defective in biofilm development(87). On polystyrene, the defect is evident

    during the earliest stages of biofilm develop-ment, i.e., adherence and microcolony forma-tion (87). efg1 null mutants are also defective

    in adhering to polyurethane central venouscatheter material (65). TheEAP1 gene, which

    encodes a predicted cell wall, GPI-anchoredprotein, is dependent on Efg1p for expres-

    sion and may be a critical target of Efg1p.

    Expression of EAP1 in nonadherent Saccha-

    romyces cerevisiae cells resulted in increased ad-

    herence to polystyrene, suggesting that this

    surface protein can mediate attachment topolystyrene (66). Therefore, the failure ofefg1 mutants to initiate biofilm formation onpolystyrene may reflect the absence of Eap1p.

    Other mutations affect adherence andbiofilm formation. Mutants lacking ACE2,

    which encodes a transcription factor that

    regulates expression of chitinase and cellwall proteins, exhibit reduced adherence to

    polystyrene and reduced biofilm formation(50). Mutants lacking the NOT4 gene, which

    encodes a putative E3 ubiquitin ligase, fail to

    attach firmly to a serum-coated plastic surfaceand are defective in biofilm formation (57). As

    with the efg1 mutant, the absence of Not4p

    or Ace2p may alter the surface properties ofC. albicans, leading to the observed defects inadherence and biofilm development.

    Adherence ofCandida glabrata leading to

    biofilm formation is mediated in part byEpa6p, a cell surface protein. Expression of

    EPA6isactivatedunderconditionsthatleadtobiofilm developmentthrough alterationof the

    subtelomeric silencing machinery (48). Takentogether, these results demonstrate that alter-

    ation of the cell surface by any one of several

    mechanisms results in reduced adherence andreduced biofilm development.

    Development of Animal Modelsfor Biofilms

    Although model systems make analysis of the

    structure and development of biofilms acces-sible to study, animal models are necessary

    to understand the pathogenesis of biofilm-related disease. Two animal models have been

    recently described, one utilizing rabbits (100)and one using rats (5). Both systems involveplacement of a central venous catheter fol-

    lowed by direct inoculation ofC. albicanscellsinto the lumen of the catheter. The resulting

    biofilms arestructurallysimilar to biofilms de-scribed in laboratory model systems, except

    for the possible presence of host cells in the

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    biofilm (5). The catheter biofilms also exhibit

    drug resistance and express the CDR2 gene,consistent with results obtained in laboratory

    model systems (5, 100). In the rat model,biofilm development leads to seeding of the

    kidneys with C. albicans, demonstrating dis-seminated disease. These animal models offer

    the potential for evaluation of new treatmentsfor biofilm infections based on insights fromlaboratory model systems.

    In summary, recent developments haverevealed molecular activities required for

    biofilm development. Expression of appropri-ate cell surface molecules for adhesion and

    expression of genes needed for high levels

    of protein synthesis are critical for successfulbiofilm formation. Mechanisms underlying

    antifungal resistance differ in early biofilms

    and mature biofilms, indicating that differentstrategies are needed to circumvent this prop-erty of biofilms.

    MECHANISMS OF INVASIVEGROWTH

    Tissue Invasion byC. albicansHyphae Occurs on Epithelial,Epidermal, and Endothelial

    Surfaces During CandidiasisIn superficialcandidiasis, epidermalor epithe-

    lial surface invasion by C. albicans hyphae iscommonly observed (79). When fungi colo-

    nize an epithelial or epidermal surface, they

    adhere to host cells and create depressionsin the surface of the host cells (45, 51, 60,

    88). Fungal yeast-form cells also convert tofilamentous hyphae, which penetrate into the

    surface.During invasion and traversal of an

    endothelial surface, the initial entry of yeast-form cells into endothelial cells is by an endo-cytotic process (22). Damage to the endothe-

    lial surface (33, 52) results in exposure of theunderlying basement membrane, which may

    then be invaded by hyphal-form cells.In specimens scraped from human oral or

    cutaneous lesions, most C. albicans cells are

    Endothelial:pertaining to tissuecomposed of a layerof flat squamouscells, such as thoselining blood and

    lymphatic vessels andthe heart

    found within host cells (20, 70, 73). Access to

    the interior of host cells is probably achievedby a combination of enzymatic activities (e.g.,

    proteases and phospholipase) and mechani-cal force. Ultrastructural observations reveal

    areas of clearing around penetrating hyphae,supporting a role for lytic enzymes during in-

    vasion (73, 99, 109). In addition, in samplescollected from cutaneous candidiasis cases,the corneocytes appear deformed as a result

    of their interactions with C. albicans, support-ing the notion that C. albicansuses mechani-

    cal force to aid penetration (99). Studies withmodel systems using explanted tissue, animal

    infection, or cells in culture confirm these fea-

    tures of invasion by C. albicans and demon-stratethat C. albicanshyphae may enter or pass

    completely through host epithelial or epider-

    mal cells with minimal damage to the host cell(16, 32, 46, 88, 114).

    In summary, hyphal penetration is a key

    component of invasive growth, the process of

    penetrating the substratum. Invasion of theepithelial surface allows infecting organisms

    to reach thebloodstream,andpenetration anddisruption of endothelial surfaces allow or-

    ganisms to escape from the bloodstream andinfect deep tissues. Thus, the invasive behav-

    ior ofC. albicanson a biological surface con-

    tributes to disease pathogenesis.

    Protease and PhospholipaseActivities Contribute toInvasion of Host Tissue

    Degradative enzymes secreted by C. albicans

    cells are important for tissue invasion. Inhibi-tion of the secreted aspartyl protease (SAP)

    class of enzymes with the inhibitor pep-statin decreases tissue invasion (76). Pepstatin

    treatment also enhances survival followingintranasal challenge in mice by C. albicans

    (31). In addition, several mutants lacking SAP

    genes showed decreased invasion (76). Simi-larly, secreted phospholipase activity has been

    implicated in tissue invasion. In invading hy-phae, phospholipase activity is concentrated

    at the hyphal tip (35, 84); a mutant lacking

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    secreted phospholipase B1 exhibits reduced

    ability to penetrate cell monolayers (63) ortissue (75). These data strongly implicate se-

    creted proteases and phospholipases in suc-cessful invasion.

    Filamentation During InvasiveGrowth is Promoted by PhysicalContact

    As discussed above, hyphae that are capa-ble of exerting mechanical force on host

    cells are characteristically seen in specimenstaken from infected tissue and probably con-

    tribute to invasion. Several experimental reg-

    imens stimulate hyphal growth in the labora-tory including the use of special media, high

    temperature, or microaerophilic conditions

    (30, 39). To study invasive hyphal development

    specifically, we have used an agar model sys-

    tem that mimics some of the features of tissue

    invasion.Growth ofC. albicanscells embedded

    Figure 1

    Invasive growth ofC. albicanswithin host tissue. Sections of fixed tonguetissue from gnotobiotic immunosuppressed piglets orally inoculated with(panel a) wild-type C. albicansor (panel b) efg1 cph1 double null mutantcells. Immunohistochemical analysis with anti-C. albicansantibody isshown. From Reference 91 with permission.

    within agarmedium stimulatesthe conversion

    of yeast-form cells to filaments that invade themedium (17). Control experiments indicate

    that the important cue for hyphal productionis not reduced oxygen levels or gradients of

    nutrients but rather physical contact of cellswith agar or other matrixmaterial (17). Unlike

    hyphal development stimulated by other cues,invasive filamentation of cells in agar mediumis readily observed in rich medium at low or

    high temperature.Studies of immunosuppressed gnotobi-

    otic piglets orally inoculated with C. albicans

    suggest that contact-dependent filamentation

    contributes to invasion of tissue. Theefg1/efg1

    cph1/cph1 double mutant strain, which lackstwo transcription factors that regulate fila-

    mentation, forms filaments and invades the

    tongue of the piglet (91) (Figure 1) or agarmedium (36, 91), but it is defective in fil-amentation under all other conditions (68).

    These results suggest that filamentation in re-

    sponse to contact with a surface contributesto invasion of epithelial tissue and is de-

    pendent on factors other than Efg1p andCph1p.

    Transcription Factors Regulating

    Invasive Growth by Embedded CellsTo date, many genes that differentially affect

    filamentous growth depending on whethercells are grown in liquid or on agar medium

    have been identified. These genes and their

    phenotypes are summarized in Table 1. Tofocus specifically on the molecular mecha-

    nisms underlying the filamentous responseto growth within agar medium, the follow-

    ing sections summarize the results of stud-ies that make use of the embedded growth

    condition (suspending cells within rich agarmedium).

    Of the genes known to regulate inva-

    sive growth, several are thought to encodetranscription factors (Table 1). The putative

    transcription factor CZF1 plays a key role inregulating the response of cells to embed-

    ded conditions. Deletion of CZF1 results in

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    Table 1 C. albicansgenes influencing filamentous growth within or on agar media

    Gene Filamentation phenotype Putative function Reference(s)

    Transcription factors

    CPH1 Defective on Spider and SLAD

    agar; mild defect within agar

    Transcription factor 24, 67

    CZF1 Defective within agar Transcription factor 17

    EFG1 Hyperfilamentous within agar Transcription factor 36

    EFH1 efh1 efg1double mutant

    hyperfilamentous within agar

    Transcription factor 27

    MCM1 Hyperfilamentous when

    overexpressed on agar

    Transcription factor 93

    Signaling components

    CEK1 Defective on Lees and Spider agar MAPK 24, 53

    CHK1 Defective on serum agar Histidine kinase 117

    COS1 Defective on serum and Spider agar Histidine kinase 2, 117

    CPP1 Hyperfilamentous and

    hyperinvasive on agar

    Phosphatase 23

    CST20 Defective on Spider agar MAPKKK kinase 24, 53

    GAP1 Defective on solid Spider and

    SLAD

    Amino acid permease 12

    GPA2 Defective within agar G-protein -subunit 69a, 72, 96

    GPR1 Defective within agar G-protein-coupled receptor 69a, 72

    HOG1 Defective in liquid and agar;

    hyperinvasive on SLAD agar

    MAPK 3

    HST7 Defective on Spider and SLAD

    agar; hyperfilamentous when

    overexpressed within agar

    MAPK kinase 24, 53, 96

    RAS2 Active allele and mutant defective

    within agar

    Small G-protein 69a, 96

    SLN1 Defective on serum agar Histidine kinase 117

    SSK1 Defective on agar; hyperinvasive on

    SLAD agar

    Two-component response regulator 19

    TPK1 Defective on agar PKA catalytic subunit 15

    TPK2 Defect in invasive growth of yeast

    cells on agar

    PKA catalytic subunit 15

    Other genes

    BMH1 Defective in liquid and within agar;

    one allele defective only in liquid

    14-3-3 protein 92

    FAB1 Defective on Spider and serum agar Phosphatidylinositol 3-phosphate

    5-kinase

    7

    PLD1 Defective on Spider agar;

    hyperfilamentous on

    cornmeal/Tween agar

    Phosphatidylcholine-specific

    phospholipase D1

    47

    RBR1 Defective on acidic M-199 soft agar pH-regulated putative cell wall

    protein

    69

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    MAPK:mitogen-activatedprotein kinase

    PKA: protein kinaseA

    reduced invasive filamentation. Ectopic CZF1

    expression results in accelerated filamenta-tion (17) (Figure 2). Czf1p does not affect

    morphogenesis under other conditions, sug-gesting that a unique pathway is stimulated in

    embedded cells.Mutation ofCPH1, the C. albicanshomo-

    logue of the S. cerevisiae STE12 transcriptionfactor, results in defective filamentous growthin certain media (24, 62, 67) and mildly de-

    fective filamentous growth within agar (36).The czf1 cph1 double null mutant is more de-

    fective than either single mutant, indicatingthat the two genes have partially overlapping

    functions (17).EFG1 encodes a basic helix-loop-helix

    transcription factor that is required for hy-

    phal development under most laboratory con-

    ditions (68, 107). However, C. albicans efg1mutant cells are more filamentous than wild-type cells when embedded (36) (Figure 2a,b).

    Thus, underembedded conditions,EFG1 acts

    as a negative regulator of filamentous growth.The relatedEFH1 geneisalsobelievedtoplay

    a negative role in regulating filamentation inthe embedded condition, perhaps in conjunc-

    tion with Efg1p (27). The effects of the efg1

    mutation are epistatic to the effects of the czf1

    mutation and partially epistatic to the effects

    of the cph1 mutation (36), and therefore, theefg1 cph1 double null mutant filaments duringgrowth within agar medium, as noted above.

    CZF1 affects filamentation during growthin agar (17). The effects of a CZF1 mutation,

    however, are not observed in the absence ofEFG1 (36), which suggests that CZF1 pro-motes filamentation by antagonizing EFG1-

    mediated repression. Yeast two-hybrid datasuggest that this effect may involve phys-

    ical interaction between Czf1p and Efg1p(36).

    The transcription factors Cph1p and

    Efg1p each define two distinct signalingpathways that regulate filamentous growth

    under many conditions (30). Cph1p is regu-

    lated by a MAPK cascade, and Efg1p is reg-ulated by the cAMP/PKA signaling cascade.

    The studies described above reveal the exis-

    tence of at least two different programs in

    which these cascades regulate morphogene-sis (Figure 3). Under the standard condi-

    tions used to promote filamentous growth,e.g., the use of inducers such as serum, neutral

    pH, microaerophilicconditions, temperature,

    Figure 2

    Invasive growth ofC. albicanswithin agar medium. Colonies were grown on the surface of agar medium,surface cells were washed off, and the remaining cells that were embedded within the agar werephotographed from the side. White arrowhead shows the top of the agar. Panel a, WT cells; panel b, efg1null mutant cells; panel c, czf1 null mutant cells; and panel d, cells ectopically expressing CZF1 from thepromoter of the C. albicansmaltase gene.

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    Figure 3

    The standard and embedded programs for regulation of filamentation. Filamentation stimulated bystandard inducing conditions (e.g., serum, 37C, neutral pH, starvation, microaerophilic growth) or byembedded growth requires many of the same signaling components and transcription factors. Notabledifferences include (a) the role of Efg1p as a positive regulator in the standard program and as a negativeregulator in the embedded program, and (b) a Czf1p-dependent pathway that promotes filamentationonly in the embedded program. Bold arrows indicate the relatively greater importance of theEfg1-mediated pathways in both programs. Dashed lines indicate unclear relationships. Blunt arrowsindicate negative effects. Transcription factors are depicted as boxes. For simplicity, many factors withuncertain relationships to these pathways have been left out of the figure but are discussed in greaterdetail in the text.

    and nutritional signals (30, 39), hyphal de-

    velopment by the standard program requiresEfg1p as a positive regulator. Cph1p performs

    a backup, positive function in the standardprogram. During embedded growth, filamen-

    tation is promoted by contact with agar orother matrix material. Filamentation under

    embedded conditions is controlled by the em-

    bedded program, in which Efg1p acts as a

    negative regulator and Czf1p functions as anantagonist of Efg1p repressor activity. Thefunction of Cph1p partially overlaps that of

    Czf1p in the embedded program. The po-

    tential contributions of other transcriptionalregulators of morphogenesis (25) to regula-

    tion in the embedded condition are currentlyunknown.

    Signaling Pathways RegulatingInvasive Growth by Embedded Cells

    The C. albicansgenes GPR1, GPA2, and RAS2

    regulate filamentous growth under embed-

    ded conditions (69a, 72, 96). GPR1, whichencodes a G-protein-coupled receptor, andGPA2, which encodes a G-protein -subunit

    homologue, probably function in transmis-sion of signals. gpr1 and gpa2 mutants are

    defective in filamentous growth under vari-ous conditions, particularly during embedded

    growth (69a, 72, 96). Recent studies suggestthat GPR1 and GPA2 act in the cAMP-PKA

    pathway (69a, 72). These studies demonstrate

    suppression of the gpa2 defect by additionof exogenous cAMP. In addition, the gpa2

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    mutation is rescued by overexpression ofTPK1, a component of the cAMP-PKA path-

    way, but not by overexpression ofHST7, a

    member of the MAPK pathway (69a).Under standard inducing conditions, the

    small G-protein-encoding RAS1 gene posi-tively regulates filamentous growth and is be-

    lieved to act in both the cAMP and MAPKpathways (62a) (Figure 3). Deletion ofRAS1

    causes a defect in filamentation under em-

    bedded conditions, and this defect can besuppressed by addition of exogenous cAMP,

    suggesting a positive role for both RAS1 andcAMP in regulating filamentous growth in

    this condition (69a). Although under stan-

    dard conditions exogenous cAMP acceler-ates filamentous growth, the influence of

    cAMP on filamentation of embedded cells is

    unclear.Takentogether, the datasuggest thatunder

    embedded conditions the MAPK pathway ac-

    tivates a positive regulator, Cph1p, (53) and

    promotes filamentous growth, whereas thecAMP-dependent pathway, including RAS1,GPR1, and GPA2, acts on a negative regula-tor, Efg1p, (14) that suppresses filamentous

    growth. The signaling components that lieupstream of Czf1p are not yet known.

    The two genes encoding isoforms of cat-

    alytic subunits of PKA, a component of thecAMP signaling pathway, have distinct roles

    in filamentation in liquid and agar media (15).The tpk1 mutant is defective for filamentous

    growth on agar media and is only slightly

    affected in liquid, and the tpk2 mutant isonly partially defective on agar but is strongly

    blocked for filamentation in liquid. The basisfor the differential effects ofTPK1 and TPK2

    is currently unclear.Other genes that affect morphogenesis

    on agar medium include SLN1, COS1, andCHK1, which encode two-component histi-dine kinases, SSK1, which encodes a response

    regulator, and HOG1, which encodes an os-moregulating MAPK gene (2, 3, 19, 117).

    These genes may not act within the MAPKor cAMP pathways but rather within indepen-

    dent pathways.

    The activities of numerous other genesthat specifically affect filamentation on agar

    medium have been described, but the mech-

    anisms by which they act are incompletelyunderstood. These genes are summarized in

    Table 1.

    Models for Invasion of TissueSurfaces

    Studies of the efg1 and/or the efg1 cph1 dou-ble null mutant in different animal models of

    infection reveal two mechanisms for penetra-tion of tissue surfaces. One mechanism occurs

    on mucosal surfaces and involves Efg1p-

    dependent adherence and proliferation on thesurface, followed by Efg1p-independent pen-

    etration of the surface. A second mechanism

    occurs on endothelial surfaces and involvesuptake of fungi by endocytosis, followed byintracellular, Efg1p-dependent hyphal devel-

    opment that allows fungal penetration of the

    surface.The extensive surface growth of wild-type

    C. albicans in pseudomembranous oral can-didiasis in the immunosuppressed gnotobiotic

    piglet is dependent on Efg1p and is not ob-

    served with the efg1 cph1 double null mutant(6). In addition,defects in adhesion ofefg1 null

    mutant or efg1 cph1 double null mutant cellsto oral epithelial cells and Caco-2 cells have

    been observed (26, 112).In several systems, the overall extent of in-

    vasion is reduced in the absence of Efg1p,

    probably reflecting defective adherence (26,40, 56, 114). However, invasion of host ep-

    ithelium by C. albicans can occur in the ab-sence of Efg1p (91) (Figure 1b). In fact,

    invasive growth probably requires downregu-lation ofEFG1 function. This model is based

    on the observations that efg1 null mutants arehyperfilamentous and hyperinvasive in agar(36) (Figure 2a,b) and that EFG1 transcrip-

    tion is downregulated during filamentation inliquid medium (107, 110).

    Therefore, because Czf1p is a negativeregulator of Efg1p (36), Czf1p may act as a

    switch that inactivates Efg1p and promotes

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    the conversion from surface growth to inva-

    sive growth. Activation of the Czf1p switchoccurs as a response to contact with agar or

    other matrix material. Czf1p antagonism ofEfg1p is not the only mechanism that pro-

    motes invasive filamentation, since there arealso high-temperature-activated mechanisms

    that do not require Czf1p (17). The result ofEfg1p and Czf1p activities is the characteris-tic invasion of epithelial surfaces seen in pseu-

    domembranous oral candidiasis.In contrast, other host cell types such

    as endothelial cells are stimulated to takeup C. albicans cells by endocytosis, and thus

    a second mechanism for invasion is promi-

    nent on these surfaces. In this situation,invasion is initiated by endocytosis of yeast-

    form cells. Within host cells, the fungi un-

    dergo Efg1p-dependent formation of germtubes and exit from the host cell. Germina-tion within host cells is defective when efg1

    mutant cells are internalized by macrophages

    (68) or neutrophils (56). Defective exit by ger-mination and defective endocytosis probably

    contribute to the failure ofefg1 mutants to in-vade and damage endothelial cell monolayers

    (81).In summary, tissue invasion requires

    degradative activities secreted by the invad-

    ing C. albicanshyphae and mechanical forcesexerted by the hyphae. The mechanisms

    that regulate invasion are adapted to thenature of the surface to which C. albicanscells

    are bound. The mechanism for invasion of

    mucosal surfaces resembles the embeddedprogram for regulation of filamentation. That

    is, following Efg1p-dependent proliferationon the surface, Efg1p is downregulated and

    contact-dependent hyphal development en-sues. A second mechanism involving entry of

    fungi into host cells via endocytosis followedby intracellular, Efg1p-dependent filamenta-tion and exit from the host cells is important

    on endothelial surfaces. In this situation,control of hyphal development resembles the

    standard program for regulation of filamen-tation. The cues that promote filamentation

    on the two types of surfaces are different and

    the molecules involved in controlling hyphalmorphogenesis are used in different ways.

    The existence of the two mechanisms for

    filamentation contributes to the remarkableversatility ofC. albicansas a pathogen.

    GUIDANCE OF HYPHAE BYTHIGMOTROPISM

    The direction of C. albicans hyphal growth

    can be determined by the topography ofthe substratum. This behavior, known as

    thigmotropism, allows hyphae to be guidedby ridges in the substratum (113). In stud-

    ies of this behavior, hyphae penetrate the

    pores of nucleopore membranes and, afterpenetration, follow the face of the mem-

    brane. During penetration, hyphae grow

    both away from and toward the agar un-derneath the membrane, implying that theorientation of hyphal growth is not due

    to chemotropism but to thigmotropism (38,

    101). Helical growth of hyphae occurs whencells are grown on firm surfaces, such as cel-

    lophane (102). These thigmotropic responsesto surface features are reminiscent of the

    behavior of plant-pathogenic fungi on leaf

    surfaces.Thigmotropism plays a major role in the

    location of infectable sites on plants by phy-topathogenic fungi. For example, Uromycesappendiculatus, the causative agent of beanrust, produces hyphae that are guided by

    the topography of the bean leaf surface to

    grow toward stomata, where they differen-tiate into appressoria, specialized structures

    needed for invasion of the leaf. Induction ofappressorium formation is caused by archi-

    tectural features of the stomatal guard cellsand can be mimicked in the laboratory us-

    ing polystyrene membranes bearing ridges ofthe appropriate height. The plant pathogens

    Puccinia hordeiandMagnaporthe grisea also use

    thigmotropicbehavior on thesurface of plantsto locate openings in the epidermal layer of

    plant tissue and initiate invasive growth (43,89, 116). Hence, thigmotropism plays an im-

    portant role in guidance of hyphal growth,

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    MS:mechanosensitive

    in regulation of development, and in disease

    progression. Thigmotropism has also been demon-

    strated in dermatophytes and in saprophytessuch as Mucor mucedo and Neurospora crassa

    (80). Thus, thigmotropic behavior of hyphaeis not restricted to pathogenic fungi; it is a

    general feature of fungal hyphae that mustforage for nutrients on surfaces and withinmaterials.

    The thigmotropic response ofC. albicans

    may be an adaptation for penetrating tissue.

    Studies of cultured intestinal enterocytesinfected with C. albicans (115) and of biop-

    sies of oral candidiasis taken from AIDS

    patients (90) demonstrated orientation of hy-phae along ridges or grooves and penetration

    into the regions between enterocytes or cor-

    neocytes. The authors suggested that thig-motropism may allow hyphae to locate theintercellular regions.

    MS ion channels are found in organisms

    from archeans, E. coli, and yeast to higher eu-karyotes (13, 49, 55, 118) and are believed

    to play roles in processes such as osmosensa-tion,topographic sensing, touch, and hearing.

    MS channels are activated by stretch forceson the plasma membrane, resulting in the

    opening of the channels. C. albicanspossesses

    MS channel activity. Reorientation of hyphalgrowth in response to ridges is attenuated by

    treatment with an inhibitor of MS channels,Gd3+, which suggests that MS channels are

    responsible for sensing substrate topography

    (113).

    To summarize, thigmotropic behavior al-

    lows C. albicans to respond with greatprecision to topographical features of the

    surface. This behavior may contribute totissue invasion by directing penetrating

    hyphae toward more vulnerable regions ofthe tissue. Further studies will illuminate the

    details of the molecular mechanisms usedby C. albicans to sense the features of itsenvironment.

    CONCLUSIONS

    Contact with surfaces elicits unique physio-logical responses in C. albicans. On solid sur-

    faces, C. albicanscells form biofilms with char-acteristic three-dimensional structures and

    high antifungal resistance. This response to

    contact with a surface is significant for hu-man health because of the large numbers

    of implanted medical devices used in mod-ern medicine. On tissue surfaces, C. al-

    bicans initially adheres and grows on thesurface and subsequently produces invasive

    filaments that penetrate the surface. Thisbehavior allows organisms to escape from

    their normal niche in the gastrointestinal

    tract and reach the bloodstream, settingthe stage for disseminated, life-threatening

    infection. Understanding the unique physiol-ogy of C. albicans on surfaces and the adap-

    tations of the organism that favor infection,researchers will be better equipped to develop

    methods for interrupting the progression to

    disease.

    SUMMARY POINTS

    1. Growth on surfaces is a natural part of the C. albicanslifestyle.

    2. The unique physiology of cells growing on a surface makes an important contributionto pathogenesis.

    3. Biofilm formation, a behavioral response ofC. albicanscells growing on a surface, is

    associated with medical device infection.

    4. The morphology and organization ofC. albicansbiofilms are influenced by numerous

    parameters, and thus variability may be observed in biofilms located at different siteswithin the host.

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    5. Multiple mechanisms contribute to the high resistance of biofilms to antifungal drugs.

    6. Secreted degradative enzymes and the hyphal form of growth play key roles during

    tissue invasion byC. albicans.

    7. Mechanisms that promote invasion of epithelial surfaces differ from mechanisms usedfor invasion of endothelial surfaces.

    8. EFG1 regulates several aspects of growth on surfaces, including adhesion, biofilmdevelopment, colonization, and invasion.

    ACKNOWLEDGMENTS

    We are grateful to Perry Riggle, Julia Kohler, and Linc Sonenshein for careful reading of the

    manuscript and for helpful comments. Our research on this project was supported by grantAI38591 from the National Institute of Allergy and Infectious Diseases.

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    Annual Revie

    Microbiology

    Volume 59, 20

    Contents

    Frontispiece

    Georges N. Cohen p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p xiv

    Looking Back

    Georges N. Cohen p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p 1

    Signaling in the Arbuscular Mycorrhizal Symbiosis

    Maria J. Harrison p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p 19

    Interplay Between DNA Replication and Recombination in

    Prokaryotes

    Kenneth N. Kreuzer p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p43

    Yersinia Outer Proteins: Role in Modulation of Host Cell Signaling

    Responses and Pathogenesis

    Gloria I. Viboud and James B. Bliska p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p69

    Diversity and Evolution of Protein Translocation

    Mechthild Pohlschrder, Enno Hartmann, Nicholas J. Hand, Kieran Dilks,

    and Alex Haddad p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p 91

    Alternative Candida albicansLifestyles: Growth on Surfaces

    Carol A. Kumamoto and Marcelo D. Vinces p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p 113

    Yeast Evolution and Comparative Genomics

    Gianni Liti and Edward J. Louis p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p 135

    Biology of Bacteriocyte-Associated Endosymbionts of Plant

    Sap-Sucking Insects

    Paul Baumannp p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p

    155

    Genome Trees and the Nature of Genome Evolution

    Berend Snel, Martijn A. Huynen, and Bas E. Dutilh p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p 191

    Cellular Functions, Mechanism of Action, and Regulation of FtsH

    Protease

    Koreaki Ito and Yoshinori Akiyama p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p 211

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    Mating in Candida albicansand the Search for a Sexual Cycle

    R.J. Bennett and A.D. Johnson p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p 233

    Applications of Autofluorescent Proteins for In Situ Studies in

    Microbial Ecology

    Estibaliz Larrainzar, Fergal OGara, and John P. Morrissey p p p p p p p p p p p p p p p p p p p p p p p p p p p p 257

    The Genetics of the Persistent Infection and Demyelinating Disease

    Caused by Theilers VirusMichel Brahic, Jean-Franois Bureau, and Thomas Michiels p p p p p p p p p p p p p p p p p p p p p p p p p p p p p 279

    Intracellular Compartmentation in Planctomycetes

    John A. Fuerst p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p 299

    Biogenesis of Inner Membrane Proteins in Escherichia coli

    Joen Luirink, Gunnar von Heijne, Edith Houben,

    and Jan-Willem de Gier p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p 329

    Genome-Wide Responses to DNA-Damaging Agents

    Rebecca C. Fry, Thomas J. Begley, and Leona D. Samson p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p 357

    The Rcs Phosphorelay: A Complex Signal Transduction System

    Nadim Majdalani and Susan Gottesman p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p 379

    Translational Regulation ofGCN4 and the General Amino Acid

    Control of Yeast

    Alan G. Hinnebusch p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p 407

    Biogenesis, Architecture, and Function of Bacterial Type IV Secretion

    Systems

    Peter J. Christie, Krishnamohan Atmakuri, Vidhya Krishnamoorthy,

    Simon Jakubowski, and Eric Cascalesp p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p

    451

    Regulation of Bacterial Gene Expression by Riboswitches

    Wade C. Winkler and Ronald R. Breaker p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p 487

    Opportunities for Genetic Investigation Afforded byAcinetobacter

    baylyi, A Nutritionally Versatile Bacterial Species that is Highly

    Competent for Natural Transformation

    David M. Young, Donna Parke, and L. Nicholas Ornston p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p 519

    The Origins of New Pandemic Viruses: The Acquisition of New Host

    Ranges by Canine Parvovirus and Influenza A VirusesColin R. Parrish and Yoshihiro Kawaoka p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p 553

    Vaccine-Derived Polioviruses and the Endgame Strategy for Global

    Polio Eradication

    Olen M. Kew, Roland W. Sutter, Esther M. de Gourville, Walter R. Dowdle,

    and Mark A. Pallansch p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p 587

    viii Contents

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    INDEXES

    Subject Index p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p 637

    Cumulative Index of Contributing Authors, Volumes 5559 p p p p p p p p p p p p p p p p p p p p p p p p p p p 675

    Cumulative Index of Chapter Titles, Volumes 5559 p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p 678

    ERRATA

    An online log of corrections to Annual Review of Microbiology chapters

    may be found at http://micro.annualreviews.org/