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Biology 2 Macroevolution & Systematics 1
Biology 2
Lecture Material
For
Exam 1
Eukaryotes
Halophiles
Archaea Thermophiles
Methanogens
Univeral Ancestor
Proteobacteria
Chlamydia
Bacteria Spirochetes
Cyanobacteria
Gram + Bacteria
Biology 2 Macroevolution & Systematics 2
Microevolution:
Biological Species:
Ring Species
Allopatric Speciation:
Evidence of:
Favorable Conditions:
Sympatric Speciation:
Autopolyploidy:
Allopolyploidy:
Biology 2 Macroevolution & Systematics 3
Hybrid Zones:
Reinforcement:
Fusion:
Stability:
Adaptive Radiation:
The emergence of numerous species from a common ancestor introduced into an environment, presenting a
diversity of new opportunities and problems
Biology 2 Macroevolution & Systematics 4
Macroevolution:
Gradualism:
Punctuated Equilibrium:
“Evo-devo”
Macroevolution through Major Changes in the Sequences
and Regulation of Developmental Genes
Effects of Developmental Genes – Changes in Rate and Timing
– Changes in Spatial Patterns
The Evolution of Development – Changes in Gene Sequence
– Changes in Gene Regulation
Effects of Developmental Genes:
Changes in Rate and Timing:
Heterochrony:
Paedeomorphosis:
Paedeogenesis:
Biology 2 Macroevolution & Systematics 5
Changes in Spatial Patterns:
Homeotic Genes: Hox Genes:
Homeobox: DNA, around 180 base pairs long,
found within genes that are involved in the
regulation of patterns of anatomical development.
Biology 2 Macroevolution & Systematics 6
The Evolution of Development
Changes in Gene Sequences
Changes in Gene Regulation
Evolutionary Trends:
Species Selection (Steven Stanley):
Size:
Toe Reduction:
Tooth shape/size:
Origin of Evolutionary Novelty
Exaptation (preadaptation):
Biology 2 Macroevolution & Systematics 7
SYSTEMATICS:
Comparing the genes or genomes of two species is the most direct measure of inheritance from shared
ancestors. Comparisons can be made by using three methods: DNA-DNA hybridization, restriction
maps, and DNA sequencing. Use the information to determine where species A through F belong in the
phylogenetic tree. The information below is comparing the number of differences between an amino acid
sequence from a blood protein found in rodents. (Assumption: The larger the number, the longer they
have been separated from their common ancestor)
A B C D E F
A 0 10 4 9 14 10
B 10 0 11 5 16 2
C 4 11 0 10 15 10
D 9 5 10 0 15 6
E 14 16 15 15 0 16
F 10 2 10 6 16 0
PHYLOGENETIC GROUPINGS:
Monophyletic:
Paraphyletic:
Polyphyletic:
Biology 2 Macroevolution & Systematics 8
Use the diagram below to identify whether the grouping is monophyletic, paraphyletic or polyphyletic.
A B C D E F G H 1. A and B ____________________
2. A, B and C ____________________
3. D, E, and F ____________________
4. E, F, G and H ____________________
5. F, G, and H ____________________
6. E, F, and G ____________________
SIMILARITIES
Homology:
Analogy:
Molecular Homeoplasy:
ONTOGENY RECAPITULATES PHYLOGENY (Ernst Haekel)
Biology 2 Macroevolution & Systematics 9
SYSTEMATICS:
Classical Evolutionary (Linnaean) Systematics:
Cladistics:
Assumptions:
Synapomorphies: Shared derived characters
Plesiomorphies: Shared ancestral (primitive) characters
Parsimony:
Biology 2 Macroevolution & Systematics 10
Biology 2 Macroevolution & Systematics 11
Cladistic taxonomy and classical evolutionary taxonomy are different methods of interpreting
phylogenetic data and classifying organisms. Read each statement below and check whether it relates to
the cladistic approach, the classical approach, or both. Cladistic Classical
1. Method of classifying organisms and reconstructing phylogeny ___ ___
2. Concerned only with the order of branching lineages ___ ___
3. Produces cladograms ___ ___
4. Concerned with branching and degree of divergence ___ ___
5. Differentiates between primitive and derived characters ___ ___
6. Puts lizards and crocodiles in one class, birds in another ___ ___
7. Becoming more popular with researchers ___ ___
8. Says birds are closer to crocodiles than to other reptiles ___ ___
9. Uses anatomy and molecular biology to determine relationship ___ ___
10. Places humans in the same family as some other apes ___ ___
11. Places humans in their own family, separate from apes ___ ___
12. The approach used 15 years ago ___ ___
13. Considered to be more objective approach ___ ___
14. Involves subjective judgements about divergence ___ ___
Biology 2 Macroevolution & Systematics 12
Cladogram
In cladistics, similar characteristics that come from a common ancestor are used to divide organisms into
groups. A cladogram will begin by grouping organisms based on a characteristic displayed by all the
members of the group. Subsequently, the larger group, or clade, will contain increasingly smaller groups
(clades) that share the traits of the clades before them, but also exhibit distinct changes as the organism
evolves. Draw a cladogram of the organisms below. (a 0 means the organism lacks that characteristic
and a 1 means the organism has that characteristic present)
Characteristics:
no (0), yes (1)
1 is eukaryotic
2 is multicellular
3 has segmented body
4 has jaws
5 has limbs
6 has hair
7 has placenta
Biology 2 Macroevolution & Systematics 13
BACTERIA LECTURE
Bacteria Characteristics:
Nucleoid Region:
No Membrane-bound Organelles:
Ribosomes:
Plasma Membrane:
Cell Wall:
Capsule:
Flagella:
Fimbriae:
Pili:
Asexual Reproduction:
Biology 2 Macroevolution & Systematics 14
Genetic Recombination:
Transformation:
Transduction:
Conjugation:
Classification:
Shape
Gram stain reaction
Oxygen requirements
Feeding strategies
Biology 2 Macroevolution & Systematics 15
Shapes:
Gram-Stain:
Gram Positive:
Gram Negative:
Oxygen Requirements:
Obligate aerobes:
Obligate anaerobes:
Facultative anaerobes:
Biology 2 Macroevolution & Systematics 16
Feeding Strategies:
Feeding
Strategy
Energy
Source
Carbon
Source
Photoautotrophs
Chemoautotrophs
Photoheterotrophs
Chemoheterotrophs
Nitrogen Metabolism:
Heterocysts:
Classification:
Bac
teri
a A
rchae
a
Biology 2 Macroevolution & Systematics 17
Classification:
Examples:
Characteristics:
Group:
Proteobacteria
Salmonella
E. Coli
Shape:
Gram Stain:
Oxygen Requirement:
Others:
Shape:
Gram Stain:
Oxygen Requirement:
Others:
Group:
Chlamydias
Chlamydia Shape:
Gram Stain:
Oxygen Requirement:
Others:
Group:
Spirochetes
Treponema
pallidum
Borrelia
burgdorferi
Shape:
Gram Stain:
Oxygen Requirement:
Others:
Shape:
Gram Stain:
Oxygen Requirement:
Others
Biology 2 Macroevolution & Systematics 18
Group:
Cyanobacteria
Oscillatoria Shape:
Gram Stain:
Oxygen Requirement:
Others:
Group: Gram-
positive bacteria
Clostridium
Bacillus Anthracis
Streptococcus
Staphylococcus
Shape:
Gram Stain:
Oxygen Requirement:
Others:
Shape:
Gram Stain:
Oxygen Requirement:
Others:
Shape:
Gram Stain:
Oxygen Requirement:
Others:
Shape:
Gram Stain:
Oxygen Requirement:
Others:
Domain: Archaea
Methanogens
Halophiles
Thermophiles
Biology 2 Macroevolution & Systematics 19
Pathogens:
Koch’s Postulates:
Bioremediation:
Virus Structure:
Viral Replication:
Biology 2 Macroevolution & Systematics 20
Virus Genome Structure:
Bacteriophages:
Lytic and Lysogenic Cycles:
HIV Complex:
Treatment:
Biology 2 Macroevolution & Systematics 21
Protista Lecture
Characteristics:
Protozoa:
Algae:
Fungi-like
Origin of Eukaryotes
Autogeneous:
Endosymbiotic:
Secondary Endosymbiosis:
Biology 2 Macroevolution & Systematics 22
Phylogeny of Eukarya:
LUCA:
MESS:
Classification:
Alveolata Stramenopila
Amoebozoans Opisthokonts
Rhizaria
Biology 2 Macroevolution & Systematics 23
Classification of “Protista”
Supergroup: Excavata
S. Characteristics:
Clade2 C2. Characteristics
Diplomonads
Ex.
Parabasalids
Ex.
Clade2 C2. Characteristics Clade3 C3. Characteristics
Euglenozoans
Euglenids
Ex.
Kinetoplastids
Ex.
Biology 2 Macroevolution & Systematics 24
Supergroup: SAR
S. Characteristics:
Clade1 C1. Characteristics Clade2 C2. Characteristics:
Alveolates Dinoflagellates
Ex.
Apicomplexans
Ex.
Ciliates
Ex.
Stramenopila Diatoms
(Bacillariophyta)
Ex.
Golden Algae
(Chrysophyta)
Ex.
Brown Algae
(Phaeophyta)
Ex.
Oomycetes
Ex.
Biology 2 Macroevolution & Systematics 25
Supergroup: SAR
S. Characteristics:
Rhizaria Clade2 C2. Characteristics:
Foraminiferans
Ex.
Radiolarians
Ex.
Supergroup: Archaeplastida S. Characteristics
Clade2 C2. Characteriscs:
Red Algae
(Rhodophyta)
Ex.
Chlorophytes
Ex.
Charophytes
Ex.
Biology 2 Macroevolution & Systematics 26
Supergroup: Unikonta
S. Characteristics:
Clade1 C1. Characteristics Clade2 C2. Characteristics:
Amoebozoans Slime Molds
Clade3 C3
Characteristics
Plasmo-
dial
Ex.
Cellular
Ex.
Gymnamoebas
Ex.
Entamoebas
Ex.
Opisthokonts Nucleariids
Ex.
Choanoflagellates
Ex.
Biology 2 Macroevolution & Systematics 27
FUNGI LECTURE
Evolution:
General Characteristics:
Animal-like Characteristics:
Biology 2 Macroevolution & Systematics 28
Fungal Reproduction:
Asexual:
Sexual:
Plasmogamy:
Karyogamy:
Syngamy:
Fungal Classification:
Division: Chytrids:
Biology 2 Macroevolution & Systematics 29
Division: Zygomycota:
Biology 2 Macroevolution & Systematics 30
Division: Glomeromycota
Arbuscular Mycorrhizae
Division: Ascomycota
Biology 2 Macroevolution & Systematics 31
Division: Basidiomycota
Microsporidia
Lichens:
Ecological Impacts: