bridging time and length scales in materials science and bio-physics workshop i: multiscale...
TRANSCRIPT
Bridging Time and Length Scales in MaterialsScience and Bio-Physics
Workshop I: Multiscale Modelling in Soft Matter and Bio-Physics
September 26-30, 2005
The Enigma of Biological Fusion
A comparison of two routes
With
Kirill Katsov (MRL, UC Santa Barbara)
Marcus Mueller (Institute fur Theoretische Physik, Gottingen)
Why is Fusion Important?
Cell Trafficking
Excocytosis/Endocytosis
Viral Entry
Trafficking
Exocytosis
Viral Entry
1. Stability: long-lived holes must be difficult to form
2. Fusion: long-lived holes must be easy to form
Why is Fusion Difficult to Understand?
The Biologist’s View of Fusion
The Physicist’s View
Kozlov and Markin 1983
SIMULATING FUSION
Stalk Formation
Stalk Formation and Expansion
Stalks increase rate of hole formation
Why does rate of hole formation go up?
Presumably, due to reduced line tension
Why does rate of hole formation go up?
Presumably, due to reduced line tension
The intermediate in this second scenario
Hole Formation and Fusion are Correlated
Consequence for Experiment: Leakage
An experiment to measure leakageV.A. Frolov et al. 2003
Analytic Approach to FusionSelf-Consistent Field Theory
• Investigate many possible configurations• Calculate free energy barriers of each• Change architecture easily• Analogous to Hartree Theory• Highly Non-Linear Set of Equations
Results for the Standard Mechanism
Formation of fusion pore
1. Main Barrier in Old Mechanism is Expansion
Two Consequences
2. Regime of Successful Fusion is Limited
SCF Calculation of New Mechanism
Line tension of extended stalk favors small R and
SCF Calculation (cont)
Reduced line tension of hole favors large Membrane tension favors large R
Just before F1(R,) = FIMI(R) +FS
IMI and its free eneregy
Just before F1(R,) = FIMI(R) +FS
Just after F2(R,) = FHI(R) +(1-FH(R-)+Fd
F1(R,) = F2(R,) defines a ridge (R)
Free energy landscape in and R
Free energy barriers in new and old mechanism
new old
barriers decrease with decreasing f and increasing
Difference in free energy barriers of new and old mechanism
Prediction for at barrier: leakageCircumference =2R
Resolving the enigma of fusion1. Membranes are stable because line tension of holes is large
Resolving the enigma of fusion1. Membranes are stable because line tension of holes is large
2. But if hole forms next to stalk, line tension is reduced
Line tension of holes far from, and near to, stalk
Dependence of free energy on line tension
Energy of hole 2R-R2
Energy of critical hole
Boltzmann factorPH= (AH /s2) exp(-
kT)
Boltzmann factor PH=(AH/s2) exp(- kT)
EXPONENTIAL DEPENDENCE ON SQUARE OF
LINE TENSION:
1. ENSURES STABILITY OF NORMAL MEMBRANES
Boltzmann factor PH=(AH/s2) exp(- kT)
EXPONENTIAL DEPENDENCE ON SQUARE OF
LINE TENSION:
1. ENSURES STABILITY OF NORMAL MEMBRANES
Example: In simulation
H2/kT = 8.76, AH/s2=39
PH~ 6x10-3
Boltzmann factor PH=(AH/s2) exp(- kT)
EXPONENTIAL DEPENDENCE ON SQUARE OF
LINE TENSION:
1. ENSURES STABILITY OF NORMAL MEMBRANES
2. ENABLES FUSION TO OCCUR BY REDUCING THAT LINE TENSION
Reducing the line tension from H to dr = sh+(1-H
PH-->Psh = (Nsas/s2) exp(-dr/kT)
so
Psh/PH = (Nsas/AH) exp(H/kT)(1-
dr/bare)
= (Nsas/AH) (AH/s2 PH)x
x= (1-dr/
bare)
Stability implies PH<<1
Therefore rate of hole formation near stalk
Psh/PH>>1
P~ exp(-kT)
PH~ 6x10-3
dr=H/2, Nsas/AH~0.3 Pdressed/Pbare~ 14
EXAMPLE: IN SIMULATION
In Biological Membranes, Effect is GreaterH~2.6x10-6 erg/cm
20 erg/cm2
PH~1.7 x 10-11(AH/s2) very stable
In Biological Membranes, Effect is GreaterH~2.6x10-6 erg/cm
20 erg/cm2
PH~1.7 x 10-11(AH/s2) very stable
dr/ H= 0.5, Nsas/AH~0.3
Psh/PH=0.3(1/ 1.7 x 10-11)7/16
~1x104
four orders of magnitude
Conclusion: The Enigma’s Solution
Because
1. fusion is thermally excited and
2. excitation energy proportional to
Conclusion: The Enigma’s Solution
Because
1. fusion is thermally excited and
2. excitation energy proportional to
Membranes can both be stable and undergo fusion
Furthermore
Any process which affects the line tension slightly affects the rate of fusion greatly
i.e. exquisite control
To Do
1. Effect of mixture of lipids
To Do
1. Effect of mixture of lipids
2. Effect of different composition of leaves
To Do
1. Effect of mixture of lipids
2. Effect of different composition of leaves
3. Effect of fusion proteins
Effect of Fusion Proteins?
To Do
1. Effect of mixture of lipids
2. Effect of different composition of leaves
3. Effect of fusion proteins
4. Dynamics
Thanks to
isha Kozlov, Joshua Zimmerberg,
Vadim Frolov, Leonid Chernomordik, David Siegel, Barry Lentz, Siewert Jan Marrink
ATIONAL SCIENCE FOUNDATION
AND