case acquisition from text: ontology-based information extraction with scoobie for mycbr
DESCRIPTION
myCBR is a freely available tool for rapid prototyping of similarity-based retrieval applications such as case-based product recommender systems. It provides easy-to-use model generation, data import, similarity modelling, explanation, and testing functionality together with comfortable graphical user interfaces. SCOOBIE is an ontology-based information extraction system, which uses symbolic background knowledge for extracting information from text. Extraction results depend on existing knowledge fragments. In this paper we show how to use SCOOBIE for generating cases from texts. More concrete we use ontologies of the Web of Data, published as so called Linked Data interlinked with myCBR’s case model. We present a way of formalising a case model as Linked Data ready ontology and connect it with other ontologies of the Web of Data in order to get richer cases.TRANSCRIPT
Competence Center Case-Based Reasoning
CASE ACQUISITION FROM TEXT: ONTOLOGY-BASED INFORMATION
EXTRACTION WITH SCOOBIE FOR MYCBRThomas Roth-Berghofer, Benjamin Adrian, and Andreas Dengel
German Research Center for Artificial Intelligence DFKI GmbH
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COMPETENCE CENTERCASE-BASED REASONING (CC CBR)
Klaus-Dieter Althoff
Thomas Roth-Berghofer
ArminStahl
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COMPETENCE CENTERCASE-BASED REASONING (CC CBR)
Klaus-Dieter Althoff
Thomas Roth-Berghofer
ArminStahl
KerstinBach
RégisNewo
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CBR
MOTIVATION
Donnerstag, 5. August 2010
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CBR
Ontologies
Ontology-based Information Extraction
RDFTexts
SCOOBIE
MOTIVATION
Donnerstag, 5. August 2010
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CBR
Ontologies
Ontology-based Information Extraction
RDFTexts
SCOOBIE
MOTIVATION
+
Donnerstag, 5. August 2010
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I CC
CBR
Ontologies
Ontology-based Information Extraction
RDFTexts
SCOOBIE
As of July 2009
LinkedCTReactome
Taxonomy
KEGG
PubMed
GeneID
Pfam
UniProt
OMIM
PDB
SymbolChEBI
Daily Med
Disea-some
CAS
HGNC
InterPro
Drug Bank
UniParc
UniRef
ProDom
PROSITE
Gene Ontology
HomoloGene
PubChem
MGI
UniSTS
GEOSpecies
Jamendo
BBCProgrammes
Music-brainz
Magna-tune
BBCLater +TOTP
SurgeRadio
MySpaceWrapper
Audio-Scrobbler
LinkedMDB
BBCJohnPeel
BBCPlaycount
Data
Gov-Track
US Census Data
riese
Geo-names
lingvoj
World Fact-book
Euro-stat
flickrwrappr
Open Calais
RevyuSIOCSites
Doap-space
Flickrexporter
FOAFprofiles
CrunchBase
Sem-Web-
Central
Open-Guides
Wiki-company
QDOS
Pub Guide
RDF ohloh
W3CWordNet
OpenCyc
UMBEL
Yago
DBpedia
Freebase
Virtuoso Sponger
DBLPHannover
IRIT Toulouse
SWConference
Corpus
RDF Book Mashup
Project Guten-berg
DBLPBerlin
LAAS- CNRS
Buda-pestBME
IEEE
IBM
Resex
Pisa
New-castle
RAE 2001
CiteSeer
ACM
DBLP RKB
Explorer
eprints
LIBRIS
SemanticWeb.org
Eurécom
RKBECS
South-ampton
CORDIS
ReSIST ProjectWiki
NationalScience
Foundation
ECS South-ampton
LinkedGeoData
BBC Music
MOTIVATION
+
Donnerstag, 5. August 2010
© 2
010
DFK
I CC
CBR
Ontologies
Ontology-based Information Extraction
RDFTexts
SCOOBIE
As of July 2009
LinkedCTReactome
Taxonomy
KEGG
PubMed
GeneID
Pfam
UniProt
OMIM
PDB
SymbolChEBI
Daily Med
Disea-some
CAS
HGNC
InterPro
Drug Bank
UniParc
UniRef
ProDom
PROSITE
Gene Ontology
HomoloGene
PubChem
MGI
UniSTS
GEOSpecies
Jamendo
BBCProgrammes
Music-brainz
Magna-tune
BBCLater +TOTP
SurgeRadio
MySpaceWrapper
Audio-Scrobbler
LinkedMDB
BBCJohnPeel
BBCPlaycount
Data
Gov-Track
US Census Data
riese
Geo-names
lingvoj
World Fact-book
Euro-stat
flickrwrappr
Open Calais
RevyuSIOCSites
Doap-space
Flickrexporter
FOAFprofiles
CrunchBase
Sem-Web-
Central
Open-Guides
Wiki-company
QDOS
Pub Guide
RDF ohloh
W3CWordNet
OpenCyc
UMBEL
Yago
DBpedia
Freebase
Virtuoso Sponger
DBLPHannover
IRIT Toulouse
SWConference
Corpus
RDF Book Mashup
Project Guten-berg
DBLPBerlin
LAAS- CNRS
Buda-pestBME
IEEE
IBM
Resex
Pisa
New-castle
RAE 2001
CiteSeer
ACM
DBLP RKB
Explorer
eprints
LIBRIS
SemanticWeb.org
Eurécom
RKBECS
South-ampton
CORDIS
ReSIST ProjectWiki
NationalScience
Foundation
ECS South-ampton
LinkedGeoData
BBC Music
MOTIVATION
+
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OVERVIEW
•Ontology-based Information Extraction with SCOOBIE
• Recap of myCBR
•myCBR+SCOOBIE
•Outlook and future work
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SCOOBIE: ONTOLOGIE-BASED INFORMATION EXTRACTION
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SCOOBIE
Ontologies
Ontology-based Information Extraction RDFTexts
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CBR
EXTRACT PLAIN TEXT
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EXTRACT TOKENS
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EXTRACT TOKENS
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EXTRACT TOKENS
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RECOGNISE SYMBOLS
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RECOGNISE SYMBOLS
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RECOGNISE SYMBOLS
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RECOGNISE SYMBOLS
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RECAP: MOTIVATION FOR DEVELOPING
•Need for a freely available “out of the box” tool:
• compact and easy to use
• comfortable graphical user interface for
• defining case representations
•modeling knowledge-intensive similarity measures
• testing of retrieval functionality
• support for rapid prototyping
• adaptable & extendable
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➜ ECCBR 2008
Armin Stahl and Thomas R. Roth-Berghofer. Rapid prototyping of CBR applications with the open source tool myCBR. In Ralph Bergmann and Klaus-Dieter Althoff, editors, Advances in Case-Based Reasoning. Springer Verlag, 2008.
Donnerstag, 5. August 2010
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CBR
As of July 2009
LinkedCTReactome
Taxonomy
KEGG
PubMed
GeneID
Pfam
UniProt
OMIM
PDB
SymbolChEBI
Daily Med
Disea-some
CAS
HGNC
InterPro
Drug Bank
UniParc
UniRef
ProDom
PROSITE
Gene Ontology
HomoloGene
PubChem
MGI
UniSTS
GEOSpecies
Jamendo
BBCProgrammes
Music-brainz
Magna-tune
BBCLater +TOTP
SurgeRadio
MySpaceWrapper
Audio-Scrobbler
LinkedMDB
BBCJohnPeel
BBCPlaycount
Data
Gov-Track
US Census Data
riese
Geo-names
lingvoj
World Fact-book
Euro-stat
flickrwrappr
Open Calais
RevyuSIOCSites
Doap-space
Flickrexporter
FOAFprofiles
CrunchBase
Sem-Web-
Central
Open-Guides
Wiki-company
QDOS
Pub Guide
RDF ohloh
W3CWordNet
OpenCyc
UMBEL
Yago
DBpedia
Freebase
Virtuoso Sponger
DBLPHannover
IRIT Toulouse
SWConference
Corpus
RDF Book Mashup
Project Guten-berg
DBLPBerlin
LAAS- CNRS
Buda-pestBME
IEEE
IBM
Resex
Pisa
New-castle
RAE 2001
CiteSeer
ACM
DBLP RKB
Explorer
eprints
LIBRIS
SemanticWeb.org
Eurécom
RKBECS
South-ampton
CORDIS
ReSIST ProjectWiki
NationalScience
Foundation
ECS South-ampton
LinkedGeoData
BBC Music
MOTIVATION
Ontologies
Ontology-based Information Extraction
RDFTexts
SCOOBIE +
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SEMANTIC WEB VISION
“The Semantic Web is an extension of the current Web in which information is given well-defined meaning, better enabling computers and people to work in cooperation.”
T. Berners-Lee, J. Hendler, O. Lassila, “The Semantic Web”, Scientific American, May 2001
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SEMANTIC WEB VISION
“The Semantic Web is an extension of the current Web in which information is given well-defined meaning, better enabling computers and people to work in cooperation.”
T. Berners-Lee, J. Hendler, O. Lassila, “The Semantic Web”, Scientific American, May 2001
•Web of content
•Web pages linked by semantical relations
•Machines are able to process contents and links
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SEMANTIC WEB VISION
“The Semantic Web is an extension of the current Web in which information is given well-defined meaning, better enabling computers and people to work in cooperation.”
T. Berners-Lee, J. Hendler, O. Lassila, “The Semantic Web”, Scientific American, May 2001
•Web of content
•Web pages linked by semantical relations
•Machines are able to process contents and links
• Web of content
•Web pages linked by semantical relations
•Machines are able to process contents and links
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WEB OF DATA
• Characteristics:
• Expressed in RDF
• Identified by URIs
• Accessible via http
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WEB OF TRIPLES
<rdf:Description rdf:about= "http://dbtropes.org/resource/Main/Ratatouille#Remy"> <does-not-like rdf:resource= "http://mycbr-project.net/models/Recipe#velveeta_cheese"/></rdf:Description>
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WEB OF TRIPLES
<rdf:Description rdf:about= "http://dbtropes.org/resource/Main/Ratatouille#Remy"> <does-not-like rdf:resource= "http://mycbr-project.net/models/Recipe#velveeta_cheese"/></rdf:Description>
• Characteristics:
• Expressed in RDF
• Identified by URIs
• Accessible via http
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WEB OF TRIPLES
<rdf:Description rdf:about= "http://dbtropes.org/resource/Main/Ratatouille#Remy"> <does-not-like rdf:resource= "http://mycbr-project.net/models/Recipe#velveeta_cheese"/></rdf:Description>
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USING LINKED DATA FOR CASE
GENERATIONLinkedCT
Reactome
KEGG
PubMed
GeneID
Pfam
UniProt
OMIM
PDB
ymbolChEBI
Daily Med
Disea-some
CAS
HGNC
InterPro
Drug Bank
UniParc
UniR
PROSITE
Gene Ontology
PubChem
MGI
UniSTS
GEOSpecies
Magna-tune
LinkedMDB
Geo-names
lingvoj
World Fact-book
Euro-stat
flickrwrappr
Open Calais
W3CWordNet
UMBEL
Yago
DBpedia
Freebase
Virtuoso Sponger
DBLPHannover
RDF Book Mashup
Project Guten-berg
DBLPBerlin
Pisa
CiteSeer
RKBExplorer
RKBECS
South-ampton
Case Model
Donnerstag, 5. August 2010
© 2
010
DFK
I CC
CBR
USING LINKED DATA FOR CASE
GENERATIONLinkedCT
Reactome
KEGG
PubMed
GeneID
Pfam
UniProt
OMIM
PDB
ymbolChEBI
Daily Med
Disea-some
CAS
HGNC
InterPro
Drug Bank
UniParc
UniR
PROSITE
Gene Ontology
PubChem
MGI
UniSTS
GEOSpecies
Magna-tune
LinkedMDB
Geo-names
lingvoj
World Fact-book
Euro-stat
flickrwrappr
Open Calais
W3CWordNet
UMBEL
Yago
DBpedia
Freebase
Virtuoso Sponger
DBLPHannover
RDF Book Mashup
Project Guten-berg
DBLPBerlin
Pisa
CiteSeer
RKBExplorer
RKBECS
South-ampton
Case Model
<skos:Concept rdf:about="http://mycbr-project.net/models/Recipe#Shallots"> <skos:prefLabel> Shallots </skos:prefLabel> <rdf:type rdf:resource="ingredients_vegetables"/></skos:Concept> <skos:Concept rdf:about="http://mycbr-project.net/models/Recipe#Onions"> <skos:prefLabel> Onions </skos:prefLabel> <rdf:type rdf:resource="ingredients_vegetables"/> </skos:Concept>
Donnerstag, 5. August 2010
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I CC
CBR
USING LINKED DATA FOR CASE
GENERATIONLinkedCT
Reactome
KEGG
PubMed
GeneID
Pfam
UniProt
OMIM
PDB
ymbolChEBI
Daily Med
Disea-some
CAS
HGNC
InterPro
Drug Bank
UniParc
UniR
PROSITE
Gene Ontology
PubChem
MGI
UniSTS
GEOSpecies
Magna-tune
LinkedMDB
Geo-names
lingvoj
World Fact-book
Euro-stat
flickrwrappr
Open Calais
W3CWordNet
UMBEL
Yago
DBpedia
Freebase
Virtuoso Sponger
DBLPHannover
RDF Book Mashup
Project Guten-berg
DBLPBerlin
Pisa
CiteSeer
RKBExplorer
RKBECS
South-ampton
Case Model
Donnerstag, 5. August 2010
© 2
010
DFK
I CC
CBR
USING LINKED DATA FOR CASE
GENERATIONLinkedCT
Reactome
KEGG
PubMed
GeneID
Pfam
UniProt
OMIM
PDB
ymbolChEBI
Daily Med
Disea-some
CAS
HGNC
InterPro
Drug Bank
UniParc
UniR
PROSITE
Gene Ontology
PubChem
MGI
UniSTS
GEOSpecies
Magna-tune
LinkedMDB
Geo-names
lingvoj
World Fact-book
Euro-stat
flickrwrappr
Open Calais
W3CWordNet
UMBEL
Yago
DBpedia
Freebase
Virtuoso Sponger
DBLPHannover
RDF Book Mashup
Project Guten-berg
DBLPBerlin
Pisa
CiteSeer
RKBExplorer
RKBECS
South-ampton
Case Model
Connection Model
Donnerstag, 5. August 2010
© 2
010
DFK
I CC
CBR
USING LINKED DATA FOR CASE
GENERATIONLinkedCT
Reactome
KEGG
PubMed
GeneID
Pfam
UniProt
OMIM
PDB
ymbolChEBI
Daily Med
Disea-some
CAS
HGNC
InterPro
Drug Bank
UniParc
UniR
PROSITE
Gene Ontology
PubChem
MGI
UniSTS
GEOSpecies
Magna-tune
LinkedMDB
Geo-names
lingvoj
World Fact-book
Euro-stat
flickrwrappr
Open Calais
W3CWordNet
UMBEL
Yago
DBpedia
Freebase
Virtuoso Sponger
DBLPHannover
RDF Book Mashup
Project Guten-berg
DBLPBerlin
Pisa
CiteSeer
RKBExplorer
RKBECS
South-ampton
Case Model
Connection Model
As of July 2009
LinkedCTReactome
Taxonomy
KEGG
PubMed
GeneID
Pfam
UniProt
OMIM
PDB
SymbolChEBI
Daily Med
Disea-some
CAS
HGNC
InterPro
Drug Bank
UniParc
UniRef
ProDom
PROSITE
Gene Ontology
HomoloGene
PubChem
MGI
UniSTS
GEOSpecies
Jamendo
BBCProgrammes
Music-brainz
Magna-tune
BBCLater +TOTP
SurgeRadio
MySpaceWrapper
Audio-Scrobbler
LinkedMDB
BBCJohnPeel
BBCPlaycount
Data
Gov-Track
US Census Data
riese
Geo-names
lingvoj
World Fact-book
Euro-stat
flickrwrappr
Open Calais
RevyuSIOCSites
Doap-space
Flickrexporter
FOAFprofiles
CrunchBase
Sem-Web-
Central
Open-Guides
Wiki-company
QDOS
Pub Guide
RDF ohloh
W3CWordNet
OpenCyc
UMBEL
Yago
DBpedia
Freebase
Virtuoso Sponger
DBLPHannover
IRIT Toulouse
SWConference
Corpus
RDF Book Mashup
Project Guten-berg
DBLPBerlin
LAAS- CNRS
Buda-pestBME
IEEE
IBM
Resex
Pisa
New-castle
RAE 2001
CiteSeer
ACM
DBLP RKB
Explorer
eprints
LIBRIS
SemanticWeb.org
Eurécom
RKBECS
South-ampton
CORDIS
ReSIST ProjectWiki
NationalScience
Foundation
ECS South-ampton
LinkedGeoData
BBC Music
owl:sameas
Donnerstag, 5. August 2010
© 2
010
DFK
I CC
CBR
USING LINKED DATA FOR CASE
GENERATIONLinkedCT
Reactome
KEGG
PubMed
GeneID
Pfam
UniProt
OMIM
PDB
ymbolChEBI
Daily Med
Disea-some
CAS
HGNC
InterPro
Drug Bank
UniParc
UniR
PROSITE
Gene Ontology
PubChem
MGI
UniSTS
GEOSpecies
Magna-tune
LinkedMDB
Geo-names
lingvoj
World Fact-book
Euro-stat
flickrwrappr
Open Calais
W3CWordNet
UMBEL
Yago
DBpedia
Freebase
Virtuoso Sponger
DBLPHannover
RDF Book Mashup
Project Guten-berg
DBLPBerlin
Pisa
CiteSeer
RKBExplorer
RKBECS
South-ampton
Case Model
Connection Model
As of July 2009
LinkedCTReactome
Taxonomy
KEGG
PubMed
GeneID
Pfam
UniProt
OMIM
PDB
SymbolChEBI
Daily Med
Disea-some
CAS
HGNC
InterPro
Drug Bank
UniParc
UniRef
ProDom
PROSITE
Gene Ontology
HomoloGene
PubChem
MGI
UniSTS
GEOSpecies
Jamendo
BBCProgrammes
Music-brainz
Magna-tune
BBCLater +TOTP
SurgeRadio
MySpaceWrapper
Audio-Scrobbler
LinkedMDB
BBCJohnPeel
BBCPlaycount
Data
Gov-Track
US Census Data
riese
Geo-names
lingvoj
World Fact-book
Euro-stat
flickrwrappr
Open Calais
RevyuSIOCSites
Doap-space
Flickrexporter
FOAFprofiles
CrunchBase
Sem-Web-
Central
Open-Guides
Wiki-company
QDOS
Pub Guide
RDF ohloh
W3CWordNet
OpenCyc
UMBEL
Yago
DBpedia
Freebase
Virtuoso Sponger
DBLPHannover
IRIT Toulouse
SWConference
Corpus
RDF Book Mashup
Project Guten-berg
DBLPBerlin
LAAS- CNRS
Buda-pestBME
IEEE
IBM
Resex
Pisa
New-castle
RAE 2001
CiteSeer
ACM
DBLP RKB
Explorer
eprints
LIBRIS
SemanticWeb.org
Eurécom
RKBECS
South-ampton
CORDIS
ReSIST ProjectWiki
NationalScience
Foundation
ECS South-ampton
LinkedGeoData
BBC Music
owl:sameas
<http://mycbr-project.net/models/Recipe#onions> owl:sameas <http://dbpedia.org/resource/Onion><http://mycbr-project.net/models/Recipe#green_fettuccine"> owl:sameas <http://dbpedia.org/resource/Fettucine><http://mycbr-project.net/models/Recipe#spinach_noodles"> owl:sameas <http://dbpedia.org/resource/Noodle>
Donnerstag, 5. August 2010
© 2
010
DFK
I CC
CBR
USING LINKED DATA FOR CASE
GENERATIONLinkedCT
Reactome
KEGG
PubMed
GeneID
Pfam
UniProt
OMIM
PDB
ymbolChEBI
Daily Med
Disea-some
CAS
HGNC
InterPro
Drug Bank
UniParc
UniR
PROSITE
Gene Ontology
PubChem
MGI
UniSTS
GEOSpecies
Magna-tune
LinkedMDB
Geo-names
lingvoj
World Fact-book
Euro-stat
flickrwrappr
Open Calais
W3CWordNet
UMBEL
Yago
DBpedia
Freebase
Virtuoso Sponger
DBLPHannover
RDF Book Mashup
Project Guten-berg
DBLPBerlin
Pisa
CiteSeer
RKBExplorer
RKBECS
South-ampton
Case Model
Connection Model
As of July 2009
LinkedCTReactome
Taxonomy
KEGG
PubMed
GeneID
Pfam
UniProt
OMIM
PDB
SymbolChEBI
Daily Med
Disea-some
CAS
HGNC
InterPro
Drug Bank
UniParc
UniRef
ProDom
PROSITE
Gene Ontology
HomoloGene
PubChem
MGI
UniSTS
GEOSpecies
Jamendo
BBCProgrammes
Music-brainz
Magna-tune
BBCLater +TOTP
SurgeRadio
MySpaceWrapper
Audio-Scrobbler
LinkedMDB
BBCJohnPeel
BBCPlaycount
Data
Gov-Track
US Census Data
riese
Geo-names
lingvoj
World Fact-book
Euro-stat
flickrwrappr
Open Calais
RevyuSIOCSites
Doap-space
Flickrexporter
FOAFprofiles
CrunchBase
Sem-Web-
Central
Open-Guides
Wiki-company
QDOS
Pub Guide
RDF ohloh
W3CWordNet
OpenCyc
UMBEL
Yago
DBpedia
Freebase
Virtuoso Sponger
DBLPHannover
IRIT Toulouse
SWConference
Corpus
RDF Book Mashup
Project Guten-berg
DBLPBerlin
LAAS- CNRS
Buda-pestBME
IEEE
IBM
Resex
Pisa
New-castle
RAE 2001
CiteSeer
ACM
DBLP RKB
Explorer
eprints
LIBRIS
SemanticWeb.org
Eurécom
RKBECS
South-ampton
CORDIS
ReSIST ProjectWiki
NationalScience
Foundation
ECS South-ampton
LinkedGeoData
BBC Music
owl:sameas
Donnerstag, 5. August 2010
© 2
010
DFK
I CC
CBR
USING LINKED DATA FOR CASE
GENERATIONLinkedCT
Reactome
KEGG
PubMed
GeneID
Pfam
UniProt
OMIM
PDB
ymbolChEBI
Daily Med
Disea-some
CAS
HGNC
InterPro
Drug Bank
UniParc
UniR
PROSITE
Gene Ontology
PubChem
MGI
UniSTS
GEOSpecies
Magna-tune
LinkedMDB
Geo-names
lingvoj
World Fact-book
Euro-stat
flickrwrappr
Open Calais
W3CWordNet
UMBEL
Yago
DBpedia
Freebase
Virtuoso Sponger
DBLPHannover
RDF Book Mashup
Project Guten-berg
DBLPBerlin
Pisa
CiteSeer
RKBExplorer
RKBECS
South-ampton
Case Model
Connection Model
As of July 2009
LinkedCTReactome
Taxonomy
KEGG
PubMed
GeneID
Pfam
UniProt
OMIM
PDB
SymbolChEBI
Daily Med
Disea-some
CAS
HGNC
InterPro
Drug Bank
UniParc
UniRef
ProDom
PROSITE
Gene Ontology
HomoloGene
PubChem
MGI
UniSTS
GEOSpecies
Jamendo
BBCProgrammes
Music-brainz
Magna-tune
BBCLater +TOTP
SurgeRadio
MySpaceWrapper
Audio-Scrobbler
LinkedMDB
BBCJohnPeel
BBCPlaycount
Data
Gov-Track
US Census Data
riese
Geo-names
lingvoj
World Fact-book
Euro-stat
flickrwrappr
Open Calais
RevyuSIOCSites
Doap-space
Flickrexporter
FOAFprofiles
CrunchBase
Sem-Web-
Central
Open-Guides
Wiki-company
QDOS
Pub Guide
RDF ohloh
W3CWordNet
OpenCyc
UMBEL
Yago
DBpedia
Freebase
Virtuoso Sponger
DBLPHannover
IRIT Toulouse
SWConference
Corpus
RDF Book Mashup
Project Guten-berg
DBLPBerlin
LAAS- CNRS
Buda-pestBME
IEEE
IBM
Resex
Pisa
New-castle
RAE 2001
CiteSeer
ACM
DBLP RKB
Explorer
eprints
LIBRIS
SemanticWeb.org
Eurécom
RKBECS
South-ampton
CORDIS
ReSIST ProjectWiki
NationalScience
Foundation
ECS South-ampton
LinkedGeoData
BBC Music
owl:sameas
Texts
Donnerstag, 5. August 2010
© 2
010
DFK
I CC
CBR
USING LINKED DATA FOR CASE
GENERATIONLinkedCT
Reactome
KEGG
PubMed
GeneID
Pfam
UniProt
OMIM
PDB
ymbolChEBI
Daily Med
Disea-some
CAS
HGNC
InterPro
Drug Bank
UniParc
UniR
PROSITE
Gene Ontology
PubChem
MGI
UniSTS
GEOSpecies
Magna-tune
LinkedMDB
Geo-names
lingvoj
World Fact-book
Euro-stat
flickrwrappr
Open Calais
W3CWordNet
UMBEL
Yago
DBpedia
Freebase
Virtuoso Sponger
DBLPHannover
RDF Book Mashup
Project Guten-berg
DBLPBerlin
Pisa
CiteSeer
RKBExplorer
RKBECS
South-ampton
Case Model
Connection Model
Ontology-based Information Extraction
As of July 2009
LinkedCTReactome
Taxonomy
KEGG
PubMed
GeneID
Pfam
UniProt
OMIM
PDB
SymbolChEBI
Daily Med
Disea-some
CAS
HGNC
InterPro
Drug Bank
UniParc
UniRef
ProDom
PROSITE
Gene Ontology
HomoloGene
PubChem
MGI
UniSTS
GEOSpecies
Jamendo
BBCProgrammes
Music-brainz
Magna-tune
BBCLater +TOTP
SurgeRadio
MySpaceWrapper
Audio-Scrobbler
LinkedMDB
BBCJohnPeel
BBCPlaycount
Data
Gov-Track
US Census Data
riese
Geo-names
lingvoj
World Fact-book
Euro-stat
flickrwrappr
Open Calais
RevyuSIOCSites
Doap-space
Flickrexporter
FOAFprofiles
CrunchBase
Sem-Web-
Central
Open-Guides
Wiki-company
QDOS
Pub Guide
RDF ohloh
W3CWordNet
OpenCyc
UMBEL
Yago
DBpedia
Freebase
Virtuoso Sponger
DBLPHannover
IRIT Toulouse
SWConference
Corpus
RDF Book Mashup
Project Guten-berg
DBLPBerlin
LAAS- CNRS
Buda-pestBME
IEEE
IBM
Resex
Pisa
New-castle
RAE 2001
CiteSeer
ACM
DBLP RKB
Explorer
eprints
LIBRIS
SemanticWeb.org
Eurécom
RKBECS
South-ampton
CORDIS
ReSIST ProjectWiki
NationalScience
Foundation
ECS South-ampton
LinkedGeoData
BBC Music
owl:sameas
Texts
Donnerstag, 5. August 2010
© 2
010
DFK
I CC
CBR
USING LINKED DATA FOR CASE
GENERATIONLinkedCT
Reactome
KEGG
PubMed
GeneID
Pfam
UniProt
OMIM
PDB
ymbolChEBI
Daily Med
Disea-some
CAS
HGNC
InterPro
Drug Bank
UniParc
UniR
PROSITE
Gene Ontology
PubChem
MGI
UniSTS
GEOSpecies
Magna-tune
LinkedMDB
Geo-names
lingvoj
World Fact-book
Euro-stat
flickrwrappr
Open Calais
W3CWordNet
UMBEL
Yago
DBpedia
Freebase
Virtuoso Sponger
DBLPHannover
RDF Book Mashup
Project Guten-berg
DBLPBerlin
Pisa
CiteSeer
RKBExplorer
RKBECS
South-ampton
Case Model
Connection Model
Ontology-based Information Extraction
Case Base
As of July 2009
LinkedCTReactome
Taxonomy
KEGG
PubMed
GeneID
Pfam
UniProt
OMIM
PDB
SymbolChEBI
Daily Med
Disea-some
CAS
HGNC
InterPro
Drug Bank
UniParc
UniRef
ProDom
PROSITE
Gene Ontology
HomoloGene
PubChem
MGI
UniSTS
GEOSpecies
Jamendo
BBCProgrammes
Music-brainz
Magna-tune
BBCLater +TOTP
SurgeRadio
MySpaceWrapper
Audio-Scrobbler
LinkedMDB
BBCJohnPeel
BBCPlaycount
Data
Gov-Track
US Census Data
riese
Geo-names
lingvoj
World Fact-book
Euro-stat
flickrwrappr
Open Calais
RevyuSIOCSites
Doap-space
Flickrexporter
FOAFprofiles
CrunchBase
Sem-Web-
Central
Open-Guides
Wiki-company
QDOS
Pub Guide
RDF ohloh
W3CWordNet
OpenCyc
UMBEL
Yago
DBpedia
Freebase
Virtuoso Sponger
DBLPHannover
IRIT Toulouse
SWConference
Corpus
RDF Book Mashup
Project Guten-berg
DBLPBerlin
LAAS- CNRS
Buda-pestBME
IEEE
IBM
Resex
Pisa
New-castle
RAE 2001
CiteSeer
ACM
DBLP RKB
Explorer
eprints
LIBRIS
SemanticWeb.org
Eurécom
RKBECS
South-ampton
CORDIS
ReSIST ProjectWiki
NationalScience
Foundation
ECS South-ampton
LinkedGeoData
BBC Music
owl:sameas
Texts
Donnerstag, 5. August 2010
© 2
010
DFK
I CC
CBR
Jamendo
BBCProgrammes
Music-brainz
Magna-
BBCLater +TOTP
SurgeRadio
MySpaceWrapper
Audio-Scrobbler
LinkedMDB
BBCJohnPeel
BBCPlaycount
Data
riese
Geo-names
World Fact-
Euro-stat
flickrwrappr
Open Calais
SIOCSites
Doap-space
Flickrexporter
FOAFprofiles
CrunchBase
Sem-Web-
Central
QDOS
Pub Guide
Project Guten-berg
LIBRIS
ECS South-ampton
BBC Music
USING LINKED DATA FOR CASE
GENERATIONLinkedCT
Reactome
KEGG
PubMed
GeneID
Pfam
UniProt
OMIM
PDB
ymbolChEBI
Daily Med
Disea-some
CAS
HGNC
InterPro
Drug Bank
UniParc
UniR
PROSITE
Gene Ontology
PubChem
MGI
UniSTS
GEOSpecies
Magna-tune
LinkedMDB
Geo-names
lingvoj
World Fact-book
Euro-stat
flickrwrappr
Open Calais
W3CWordNet
UMBEL
Yago
DBpedia
Freebase
Virtuoso Sponger
DBLPHannover
RDF Book Mashup
Project Guten-berg
DBLPBerlin
Pisa
CiteSeer
RKBExplorer
RKBECS
South-ampton
Case Model
Connection Model
Ontology-based Information Extraction
Case Base
As of July 2009
LinkedCTReactome
Taxonomy
KEGG
PubMed
GeneID
Pfam
UniProt
OMIM
PDB
SymbolChEBI
Daily Med
Disea-some
CAS
HGNC
InterPro
Drug Bank
UniParc
UniRef
ProDom
PROSITE
Gene Ontology
HomoloGene
PubChem
MGI
UniSTS
GEOSpecies
Jamendo
BBCProgrammes
Music-brainz
Magna-tune
BBCLater +TOTP
SurgeRadio
MySpaceWrapper
Audio-Scrobbler
LinkedMDB
BBCJohnPeel
BBCPlaycount
Data
Gov-Track
US Census Data
riese
Geo-names
lingvoj
World Fact-book
Euro-stat
flickrwrappr
Open Calais
RevyuSIOCSites
Doap-space
Flickrexporter
FOAFprofiles
CrunchBase
Sem-Web-
Central
Open-Guides
Wiki-company
QDOS
Pub Guide
RDF ohloh
W3CWordNet
OpenCyc
UMBEL
Yago
DBpedia
Freebase
Virtuoso Sponger
DBLPHannover
IRIT Toulouse
SWConference
Corpus
RDF Book Mashup
Project Guten-berg
DBLPBerlin
LAAS- CNRS
Buda-pestBME
IEEE
IBM
Resex
Pisa
New-castle
RAE 2001
CiteSeer
ACM
DBLP RKB
Explorer
eprints
LIBRIS
SemanticWeb.org
Eurécom
RKBECS
South-ampton
CORDIS
ReSIST ProjectWiki
NationalScience
Foundation
ECS South-ampton
LinkedGeoData
BBC Music
owl:sameas
Texts
Donnerstag, 5. August 2010
© 2
010
DFK
I CC
CBR
Jamendo
BBCProgrammes
Music-brainz
Magna-
BBCLater +TOTP
SurgeRadio
MySpaceWrapper
Audio-Scrobbler
LinkedMDB
BBCJohnPeel
BBCPlaycount
Data
riese
Geo-names
World Fact-
Euro-stat
flickrwrappr
Open Calais
SIOCSites
Doap-space
Flickrexporter
FOAFprofiles
CrunchBase
Sem-Web-
Central
QDOS
Pub Guide
Project Guten-berg
LIBRIS
ECS South-ampton
BBC Music
USING LINKED DATA FOR CASE
GENERATIONLinkedCT
Reactome
KEGG
PubMed
GeneID
Pfam
UniProt
OMIM
PDB
ymbolChEBI
Daily Med
Disea-some
CAS
HGNC
InterPro
Drug Bank
UniParc
UniR
PROSITE
Gene Ontology
PubChem
MGI
UniSTS
GEOSpecies
Magna-tune
LinkedMDB
Geo-names
lingvoj
World Fact-book
Euro-stat
flickrwrappr
Open Calais
W3CWordNet
UMBEL
Yago
DBpedia
Freebase
Virtuoso Sponger
DBLPHannover
RDF Book Mashup
Project Guten-berg
DBLPBerlin
Pisa
CiteSeer
RKBExplorer
RKBECS
South-ampton
Case Model
Connection Model
Ontology-based Information Extraction
Case Base
myCBRAs of July 2009
LinkedCTReactome
Taxonomy
KEGG
PubMed
GeneID
Pfam
UniProt
OMIM
PDB
SymbolChEBI
Daily Med
Disea-some
CAS
HGNC
InterPro
Drug Bank
UniParc
UniRef
ProDom
PROSITE
Gene Ontology
HomoloGene
PubChem
MGI
UniSTS
GEOSpecies
Jamendo
BBCProgrammes
Music-brainz
Magna-tune
BBCLater +TOTP
SurgeRadio
MySpaceWrapper
Audio-Scrobbler
LinkedMDB
BBCJohnPeel
BBCPlaycount
Data
Gov-Track
US Census Data
riese
Geo-names
lingvoj
World Fact-book
Euro-stat
flickrwrappr
Open Calais
RevyuSIOCSites
Doap-space
Flickrexporter
FOAFprofiles
CrunchBase
Sem-Web-
Central
Open-Guides
Wiki-company
QDOS
Pub Guide
RDF ohloh
W3CWordNet
OpenCyc
UMBEL
Yago
DBpedia
Freebase
Virtuoso Sponger
DBLPHannover
IRIT Toulouse
SWConference
Corpus
RDF Book Mashup
Project Guten-berg
DBLPBerlin
LAAS- CNRS
Buda-pestBME
IEEE
IBM
Resex
Pisa
New-castle
RAE 2001
CiteSeer
ACM
DBLP RKB
Explorer
eprints
LIBRIS
SemanticWeb.org
Eurécom
RKBECS
South-ampton
CORDIS
ReSIST ProjectWiki
NationalScience
Foundation
ECS South-ampton
LinkedGeoData
BBC Music
owl:sameas
Texts
Donnerstag, 5. August 2010
© 2
010
DFK
I CC
CBR
Jamendo
BBCProgrammes
Music-brainz
Magna-
BBCLater +TOTP
SurgeRadio
MySpaceWrapper
Audio-Scrobbler
LinkedMDB
BBCJohnPeel
BBCPlaycount
Data
riese
Geo-names
World Fact-
Euro-stat
flickrwrappr
Open Calais
SIOCSites
Doap-space
Flickrexporter
FOAFprofiles
CrunchBase
Sem-Web-
Central
QDOS
Pub Guide
Project Guten-berg
LIBRIS
ECS South-ampton
BBC Music
USING LINKED DATA FOR CASE
GENERATIONLinkedCT
Reactome
KEGG
PubMed
GeneID
Pfam
UniProt
OMIM
PDB
ymbolChEBI
Daily Med
Disea-some
CAS
HGNC
InterPro
Drug Bank
UniParc
UniR
PROSITE
Gene Ontology
PubChem
MGI
UniSTS
GEOSpecies
Magna-tune
LinkedMDB
Geo-names
lingvoj
World Fact-book
Euro-stat
flickrwrappr
Open Calais
W3CWordNet
UMBEL
Yago
DBpedia
Freebase
Virtuoso Sponger
DBLPHannover
RDF Book Mashup
Project Guten-berg
DBLPBerlin
Pisa
CiteSeer
RKBExplorer
RKBECS
South-ampton
Case Model
Connection Model
Ontology-based Information Extraction
Case Base
myCBRAs of July 2009
LinkedCTReactome
Taxonomy
KEGG
PubMed
GeneID
Pfam
UniProt
OMIM
PDB
SymbolChEBI
Daily Med
Disea-some
CAS
HGNC
InterPro
Drug Bank
UniParc
UniRef
ProDom
PROSITE
Gene Ontology
HomoloGene
PubChem
MGI
UniSTS
GEOSpecies
Jamendo
BBCProgrammes
Music-brainz
Magna-tune
BBCLater +TOTP
SurgeRadio
MySpaceWrapper
Audio-Scrobbler
LinkedMDB
BBCJohnPeel
BBCPlaycount
Data
Gov-Track
US Census Data
riese
Geo-names
lingvoj
World Fact-book
Euro-stat
flickrwrappr
Open Calais
RevyuSIOCSites
Doap-space
Flickrexporter
FOAFprofiles
CrunchBase
Sem-Web-
Central
Open-Guides
Wiki-company
QDOS
Pub Guide
RDF ohloh
W3CWordNet
OpenCyc
UMBEL
Yago
DBpedia
Freebase
Virtuoso Sponger
DBLPHannover
IRIT Toulouse
SWConference
Corpus
RDF Book Mashup
Project Guten-berg
DBLPBerlin
LAAS- CNRS
Buda-pestBME
IEEE
IBM
Resex
Pisa
New-castle
RAE 2001
CiteSeer
ACM
DBLP RKB
Explorer
eprints
LIBRIS
SemanticWeb.org
Eurécom
RKBECS
South-ampton
CORDIS
ReSIST ProjectWiki
NationalScience
Foundation
ECS South-ampton
LinkedGeoData
BBC Music
owl:sameas
Texts
Donnerstag, 5. August 2010
© 2
010
DFK
I CC
CBR
• Improved UI based on Rich Client Platform• Use of Perspectives,
e.g., for text-to-case transformation via SCOOBIE• Plus SDK• Import of myCBR
2.6.x files•…
3
Donnerstag, 5. August 2010
© 2
010
DFK
I CC
CBR
• Improved UI based on Rich Client Platform• Use of Perspectives,
e.g., for text-to-case transformation via SCOOBIE• Plus SDK• Import of myCBR
2.6.x files•…
3
Donnerstag, 5. August 2010
© 2
010
DFK
I CC
CBR
PREVIEW
• Configuration of source XML file
• Assignment of attribute to XML path
• Copy or information extraction
3
Donnerstag, 5. August 2010
© 2
010
DFK
I CC
CBR
PREVIEW3
Donnerstag, 5. August 2010
© 2
010
DFK
I CC
CBR
PREVIEW3
Donnerstag, 5. August 2010
© 2
010
DFK
I CC
CBR
PREVIEW3
Donnerstag, 5. August 2010
© 2
010
DFK
I CC
CBR
PREVIEW3
Donnerstag, 5. August 2010
© 2
010
DFK
I CC
CBR
PREVIEW3
Donnerstag, 5. August 2010
© 2
010
DFK
I CC
CBR
PREVIEW3
Donnerstag, 5. August 2010
© 2
010
DFK
I CC
CBR
PREVIEW3
Donnerstag, 5. August 2010
© 2
010
DFK
I CC
CBR
PREVIEW3
Donnerstag, 5. August 2010
© 2
010
DFK
I CC
CBR
PREVIEW3
Donnerstag, 5. August 2010
© 2
010
DFK
I CC
CBR
OUTLOOK AND FUTURE WORK
Donnerstag, 5. August 2010
© 2
010
DFK
I CC
CBR
LinkedCTReactome
KEGG
PubMed
GeneID
Pfam
UniProt
OMIM
PDB
ymbolChEBI
Daily Med
Disea-some
CAS
HGNC
InterPro
Drug Bank
UniParc
UniR
PROSITE
Gene Ontology
PubChem
MGI
UniSTS
GEOSpecies
Magna-tune
LinkedMDB
Geo-names
lingvoj
World Fact-book
Euro-stat
flickrwrappr
Open Calais
W3CWordNet
UMBEL
Yago
DBpedia
Freebase
Virtuoso Sponger
DBLPHannover
RDF Book Mashup
Project Guten-berg
DBLPBerlin
Pisa
CiteSeer
RKBExplorer
RKBECS
South-ampton
Jamendo
BBCProgrammes
Music-brainz
Magna-
BBCLater +TOTP
SurgeRadio
MySpaceWrapper
Audio-Scrobbler
LinkedMDB
BBCJohnPeel
BBCPlaycount
Data
riese
Geo-names
World Fact-
Euro-stat
flickrwrappr
Open Calais
SIOCSites
Doap-space
Flickrexporter
FOAFprofiles
CrunchBase
Sem-Web-
Central
QDOS
Pub Guide
Project Guten-berg
LIBRIS
ECS South-ampton
BBC Music
ITERATIVE IMPROVEMENT OF
CONNECTION MODEL
As of July 2009
LinkedCTReactome
Taxonomy
KEGG
PubMed
GeneID
Pfam
UniProt
OMIM
PDB
SymbolChEBI
Daily Med
Disea-some
CAS
HGNC
InterPro
Drug Bank
UniParc
UniRef
ProDom
PROSITE
Gene Ontology
HomoloGene
PubChem
MGI
UniSTS
GEOSpecies
Jamendo
BBCProgrammes
Music-brainz
Magna-tune
BBCLater +TOTP
SurgeRadio
MySpaceWrapper
Audio-Scrobbler
LinkedMDB
BBCJohnPeel
BBCPlaycount
Data
Gov-Track
US Census Data
riese
Geo-names
lingvoj
World Fact-book
Euro-stat
flickrwrappr
Open Calais
RevyuSIOCSites
Doap-space
Flickrexporter
FOAFprofiles
CrunchBase
Sem-Web-
Central
Open-Guides
Wiki-company
QDOS
Pub Guide
RDF ohloh
W3CWordNet
OpenCyc
UMBEL
Yago
DBpedia
Freebase
Virtuoso Sponger
DBLPHannover
IRIT Toulouse
SWConference
Corpus
RDF Book Mashup
Project Guten-berg
DBLPBerlin
LAAS- CNRS
Buda-pestBME
IEEE
IBM
Resex
Pisa
New-castle
RAE 2001
CiteSeer
ACM
DBLP RKB
Explorer
eprints
LIBRIS
SemanticWeb.org
Eurécom
RKBECS
South-ampton
CORDIS
ReSIST ProjectWiki
NationalScience
Foundation
ECS South-ampton
LinkedGeoData
BBC Music
owl:sameas
Case Model
Connection Model
Ontology-based Information Extraction
Case Base
myCBR
Texts
Donnerstag, 5. August 2010
© 2
010
DFK
I CC
CBR
LinkedCTReactome
KEGG
PubMed
GeneID
Pfam
UniProt
OMIM
PDB
ymbolChEBI
Daily Med
Disea-some
CAS
HGNC
InterPro
Drug Bank
UniParc
UniR
PROSITE
Gene Ontology
PubChem
MGI
UniSTS
GEOSpecies
Magna-tune
LinkedMDB
Geo-names
lingvoj
World Fact-book
Euro-stat
flickrwrappr
Open Calais
W3CWordNet
UMBEL
Yago
DBpedia
Freebase
Virtuoso Sponger
DBLPHannover
RDF Book Mashup
Project Guten-berg
DBLPBerlin
Pisa
CiteSeer
RKBExplorer
RKBECS
South-ampton
Jamendo
BBCProgrammes
Music-brainz
Magna-
BBCLater +TOTP
SurgeRadio
MySpaceWrapper
Audio-Scrobbler
LinkedMDB
BBCJohnPeel
BBCPlaycount
Data
riese
Geo-names
World Fact-
Euro-stat
flickrwrappr
Open Calais
SIOCSites
Doap-space
Flickrexporter
FOAFprofiles
CrunchBase
Sem-Web-
Central
QDOS
Pub Guide
Project Guten-berg
LIBRIS
ECS South-ampton
BBC Music
ITERATIVE IMPROVEMENT OF
CONNECTION MODEL
As of July 2009
LinkedCTReactome
Taxonomy
KEGG
PubMed
GeneID
Pfam
UniProt
OMIM
PDB
SymbolChEBI
Daily Med
Disea-some
CAS
HGNC
InterPro
Drug Bank
UniParc
UniRef
ProDom
PROSITE
Gene Ontology
HomoloGene
PubChem
MGI
UniSTS
GEOSpecies
Jamendo
BBCProgrammes
Music-brainz
Magna-tune
BBCLater +TOTP
SurgeRadio
MySpaceWrapper
Audio-Scrobbler
LinkedMDB
BBCJohnPeel
BBCPlaycount
Data
Gov-Track
US Census Data
riese
Geo-names
lingvoj
World Fact-book
Euro-stat
flickrwrappr
Open Calais
RevyuSIOCSites
Doap-space
Flickrexporter
FOAFprofiles
CrunchBase
Sem-Web-
Central
Open-Guides
Wiki-company
QDOS
Pub Guide
RDF ohloh
W3CWordNet
OpenCyc
UMBEL
Yago
DBpedia
Freebase
Virtuoso Sponger
DBLPHannover
IRIT Toulouse
SWConference
Corpus
RDF Book Mashup
Project Guten-berg
DBLPBerlin
LAAS- CNRS
Buda-pestBME
IEEE
IBM
Resex
Pisa
New-castle
RAE 2001
CiteSeer
ACM
DBLP RKB
Explorer
eprints
LIBRIS
SemanticWeb.org
Eurécom
RKBECS
South-ampton
CORDIS
ReSIST ProjectWiki
NationalScience
Foundation
ECS South-ampton
LinkedGeoData
BBC Music
owl:sameas
Case Model
Connection Model
Ontology-based Information Extraction
Case Base
myCBR
Texts
Donnerstag, 5. August 2010
Competence Center Case-Based Reasoning
CASE ACQUISITION FROM TEXT: ONTOLOGY-BASED INFORMATION
EXTRACTION WITH SCOOBIE FOR MYCBRThomas Roth-Berghofer, Benjamin Adrian, and Andreas Dengel
German Research Center for Artificial Intelligence DFKI GmbH
Thank you!
http://mycbr-project.net
http://www.dfki.de/~roth @thorob67
Donnerstag, 5. August 2010