center for biomolecular science and engineering university of california, santa cruz robert kuhn,...
TRANSCRIPT
Robert Kuhn, PhDCenter for Biomolecular Science and EngineeringCenter for Biomolecular Science and Engineering
University of California, Santa CruzUniversity of California, Santa Cruz
FaceBase kick-off meetingFaceBase kick-off meeting
Bethesda, MDBethesda, MD
November 16, 2009November 16, 2009
UCSC Genome Browser
Thanks!• Funding: NHGRI, NCI, NICHD, NIDCR, HHMI, QB3, SU2C
• Data: NCBI, Ensembl, UniProt, Baylor, WUSTL, UWash, IMIM, OMIM, numerous other contributors
• UCSC Browser team:
– David Haussler – PI– Jim Kent – Browser Concept, BLAT, Team Leader, Co-PI– Mark Diekhans, Fan Hsu, Angie Hinrichs, Kate Rosenbloom, Hiram
Clawson, Rachel Harte, Galt Barber, Andy Pohl, Tim Dreszer, Larry Meyer, Mike Pheasant, Brian Raney, Melissa Cline – Engineering
– Donna Karolchik, Robert Kuhn, Ann Zweig, Kayla Smith, Brooke Rhead, Pauline Fujita, Katrina Learned – QA, Docs, Support
– Ting Wang, Jing Zhu, Steve Benz, Zach Sanborn – Cancer Browser– Jorge Garcia, Victoria Lin, Erich Weiler, Alex Wolfe – KiloKluster, Sys-
admin
Browser: interface to database
softwaresoftware
database
tables
browser
details track (mapping)primary tablesecondary tables
Custom Tracks
• View private data in context of all other UCSC-hosted data.
• Intersect with public data.
• Save custom track data in Sessions.
UCSC Browser Mirrors
mirror sites:
DukeCornell
Medical College of WisconsinCopenhagen
Brisbane
see also wikipedia for links
Variation Resources
• chromosome
Xq26.3
dbSNP 129
Database of Genomic Variants
Segmental Duplications