characterization of the associated microorganisms of thalassia
DESCRIPTION
Pre-proposal presentation by Manoj Saxena, Laura Fidalgo and Ingrid Venero for CIAM 6117TRANSCRIPT
Characterization of the associated
microorganisms of Thalassia
testudinum as an indicator of sea grass
ecosystem health in Puerto Rico
By:
Manoj Saxena
Laura L Fidalgo
Ingrid Venero Vélez
Coastal Environments
Loretta Roberson, Ph.D.
Introduction
SEA GRASS ECOSYSTEMS
Primary producer
Important for nutrient cycling
Habitats of many other species
Bio indicators of environmental conditions
Sea Grass- microbes
interaction
Global map indicating changes in sea grass area plotted by coastline regions.
Waycott M et al. PNAS 2009;106:12377-12381
©2009 by National Academy of Sciences
Sea Grass Ecosystems are under threat
RED = Rapidly decreasing
Goals and Objectives
Hypothesis: Fecal pollution has an impact on the composition and diversity of the epiphytic microorganisms on Thalassia testudinum leaves effecting its growth.
Specific objectives: a) Characterize the composition and diversity of Thalassia testudinum associated microorganisms in three different sites that range from minimal to heavy contamination. b) Evaluate the relation between degree of fecal pollution and concentration of epiphytic coliform bacteria.
c) Evaluate the biological productivity of Thalassia testudinum in each study site.
Methodology Study sites
Water quality gradient along San Juan Estuary (PEBSJ)
Condado Lagoon (B +quality)
San Juan Bay (B quality)
San Jose (C quality)
Control area: Jobos Bay (Natural Pristine System)
Methodology
Sea grass productivity Data Source Morphometry of blades - Leaf
Area Index (LAI) Standing Crop Biomass - Blade
production and turnover.
Analysis
Turnover will be calculated by dividing standing crop by production value.
Microbial community structure
Data Source DNA from epiphytic microbial
communities on Thalassia leaves Sequencing – Meta genomics
Analysis
Dendrogram cluster analysis- comparison
of microorganism community
composition by sea grass bed area
Methodology
A
Results and Potential Benefits
Direct Defines microbial community of sea grass Thalassia testudinum
Pollution effects on microbiota composition
Knowledge of new plant- microbe interactions
Bio-indicator
Indirect Opens new research areas
Potential discovery of new microbes species
Questions
Reference
Celdrán, D., Espinosa, E., Sánchez-Amat, A., & Marín, A. (2012). Effects of
epibiotic bacteria on leaf growth and epiphytes of the seagrass posidonia
oceanica. Marine Ecology Progress Series, 456, 21-27. doi:
10.3354/meps09672
Merina, M., Lipton , A. P., & Godwin Wesley, S. (2011). Isolation,
characterization and growth response of biofilm forming bacteria bacillus
pumilus from the sea grass, halodule pinifolia off kanyakumari coast. Indian
Journal of Marine Sciences, 40(3), 443-448.
Mass mortality of the tropical seagrass Thalassia testudinum
in Florida Bay (USA) MARINE ECOLOGY PROGRESS SERIES, Vol. 71:
297-299, 1991
Waycott M, et al. Accelerating loss of seagrasses across the globe threatens
coastal ecosystems. Proc Natl Acad Sci USA 2009;106:12377–12381
Teena S. Michael, et al. A review of epiphyte community development:
Surface interactions and settlement on seagrass,Journal of Environmental
Biology, July 2008, 29(4) 629-638 (2008)
Activity Year 1 Year 2 Semester 1 Semester 2 Semester 1 Semester2
Sampling of sea
grass leaves X
Water sampling X Water quality
analysis X
DNA extraction
from sea grass
samples
X
PCR
amplification X
Sequencing X Statistical
Analysis X X
Writing
Manuscript X
Time table