chem 109 c - people | department of chemistry - uc santa ... · pdf filechem 109 c ......
TRANSCRIPT
![Page 1: Chem 109 C - People | Department of Chemistry - UC Santa ... · PDF fileChem 109 C ... holidays - no class Thanksgiving Wednesday, 11/26 Veteran’s day off transferred to 12/1](https://reader031.vdocuments.net/reader031/viewer/2022030507/5ab642e97f8b9a0f058da3aa/html5/thumbnails/1.jpg)
Fall 2014���
Armen Zakarian�Office: Chemistry Bldn 2217!
Chem 109 C �
http://web.chem.ucsb.edu/~zakariangroup/courses.html!
![Page 2: Chem 109 C - People | Department of Chemistry - UC Santa ... · PDF fileChem 109 C ... holidays - no class Thanksgiving Wednesday, 11/26 Veteran’s day off transferred to 12/1](https://reader031.vdocuments.net/reader031/viewer/2022030507/5ab642e97f8b9a0f058da3aa/html5/thumbnails/2.jpg)
syllabus
Office Hours �
Mon, Wed - 9:00-9:50 am (or email) �
Chemistry building, room 2217�
website: http://web.chem.ucsb.edu/~zakariangroup/courses.html �
email - [email protected] �
make sure to include Subject: 109C �
![Page 3: Chem 109 C - People | Department of Chemistry - UC Santa ... · PDF fileChem 109 C ... holidays - no class Thanksgiving Wednesday, 11/26 Veteran’s day off transferred to 12/1](https://reader031.vdocuments.net/reader031/viewer/2022030507/5ab642e97f8b9a0f058da3aa/html5/thumbnails/3.jpg)
grading
500 points total�
three midterm exams: � 100 points each� lowest scoring is dropped�
a 300 point final exam�
A 85-100%� B 75-84.9%� C 60-74.9%� D 45-59.9%�
Disclaimer: no make ups for any tests�
![Page 4: Chem 109 C - People | Department of Chemistry - UC Santa ... · PDF fileChem 109 C ... holidays - no class Thanksgiving Wednesday, 11/26 Veteran’s day off transferred to 12/1](https://reader031.vdocuments.net/reader031/viewer/2022030507/5ab642e97f8b9a0f058da3aa/html5/thumbnails/4.jpg)
holidays - no class
Thanksgiving Wednesday, 11/26�
Veteran’s day off transferred to 12/1 �
Stay tuned for schedule in the last two weeks of 12/1 �
– 12/12 �
![Page 5: Chem 109 C - People | Department of Chemistry - UC Santa ... · PDF fileChem 109 C ... holidays - no class Thanksgiving Wednesday, 11/26 Veteran’s day off transferred to 12/1](https://reader031.vdocuments.net/reader031/viewer/2022030507/5ab642e97f8b9a0f058da3aa/html5/thumbnails/5.jpg)
exams
all exams will be in this room, BRDA 1610�
All hats, cell phones, PDAs, calculators, ipods, and other electronic devices must remain stowed away during exams
Bring a picture ID to the exam �
No makeups – a missed test can be the dropped test
![Page 6: Chem 109 C - People | Department of Chemistry - UC Santa ... · PDF fileChem 109 C ... holidays - no class Thanksgiving Wednesday, 11/26 Veteran’s day off transferred to 12/1](https://reader031.vdocuments.net/reader031/viewer/2022030507/5ab642e97f8b9a0f058da3aa/html5/thumbnails/6.jpg)
course outline Part 7�
Chapter 21 – Carbohydrates Chapter 22 – Amino Acids, Peptides, and Proteins Chapter 23 – Catalysis and Enzymes Chapter 24 – The Organic Mechanisms of the Coenzymes Chapter 25a – Organic Chemistry of Metabolic Pathways Chapter 25b – Lipids and Terpenes Chapter 26 – Nucleosides, Nucleotides, and Nucleic Acids
[Part 8 Chapter 29 - Synthetic Polymers etc.]
![Page 7: Chem 109 C - People | Department of Chemistry - UC Santa ... · PDF fileChem 109 C ... holidays - no class Thanksgiving Wednesday, 11/26 Veteran’s day off transferred to 12/1](https://reader031.vdocuments.net/reader031/viewer/2022030507/5ab642e97f8b9a0f058da3aa/html5/thumbnails/7.jpg)
formula for success:
• read the textbook before coming to class
• come to class
• do the suggested problems
• do the suggested problems again
• study with a friend or in a group
• put emphasis on understanding vs. simple memorization
![Page 8: Chem 109 C - People | Department of Chemistry - UC Santa ... · PDF fileChem 109 C ... holidays - no class Thanksgiving Wednesday, 11/26 Veteran’s day off transferred to 12/1](https://reader031.vdocuments.net/reader031/viewer/2022030507/5ab642e97f8b9a0f058da3aa/html5/thumbnails/8.jpg)
formula for success:
![Page 9: Chem 109 C - People | Department of Chemistry - UC Santa ... · PDF fileChem 109 C ... holidays - no class Thanksgiving Wednesday, 11/26 Veteran’s day off transferred to 12/1](https://reader031.vdocuments.net/reader031/viewer/2022030507/5ab642e97f8b9a0f058da3aa/html5/thumbnails/9.jpg)
formula for success:
I will use a combination of: �� blackboard�� PowerPoint, mostly for large � biomolecules and Practice � Proiblems �
• read it • do problems
![Page 10: Chem 109 C - People | Department of Chemistry - UC Santa ... · PDF fileChem 109 C ... holidays - no class Thanksgiving Wednesday, 11/26 Veteran’s day off transferred to 12/1](https://reader031.vdocuments.net/reader031/viewer/2022030507/5ab642e97f8b9a0f058da3aa/html5/thumbnails/10.jpg)
Biomolecules • carbohydrates, sugars, saccharides �
!>50% of all biomass
�
O
HOHO
HO
OH
OHD-glucose
![Page 11: Chem 109 C - People | Department of Chemistry - UC Santa ... · PDF fileChem 109 C ... holidays - no class Thanksgiving Wednesday, 11/26 Veteran’s day off transferred to 12/1](https://reader031.vdocuments.net/reader031/viewer/2022030507/5ab642e97f8b9a0f058da3aa/html5/thumbnails/11.jpg)
Biomolecules • carbohydrates, sugars, saccharides �
!>50% of all biomass
• lipids �!fats/oils!!terpenes!!steroids, etc.!
!
��
O
HOHO
HO
OH
OHD-glucose
HO
H
H H
cholesterol
O
O
O
O
OO
butter
![Page 12: Chem 109 C - People | Department of Chemistry - UC Santa ... · PDF fileChem 109 C ... holidays - no class Thanksgiving Wednesday, 11/26 Veteran’s day off transferred to 12/1](https://reader031.vdocuments.net/reader031/viewer/2022030507/5ab642e97f8b9a0f058da3aa/html5/thumbnails/12.jpg)
Biomolecules • carbohydrates, sugars, saccharides �
!>50% of all biomass
• lipids �!fats/oils!!terpenes!!steroids, etc.!
!
• amino acids, peptides, proteins �
�
O
HOHO
HO
OH
OHD-glucose
HO
H
H H
cholesterol
O
O
O
O
OO
butter
NH3+
O
O-
L-alanine
![Page 13: Chem 109 C - People | Department of Chemistry - UC Santa ... · PDF fileChem 109 C ... holidays - no class Thanksgiving Wednesday, 11/26 Veteran’s day off transferred to 12/1](https://reader031.vdocuments.net/reader031/viewer/2022030507/5ab642e97f8b9a0f058da3aa/html5/thumbnails/13.jpg)
Biomolecules O
HOHO
HO
OH
OHD-glucose
HO
H
H H
cholesterol
O
O
O
O
OO
butter
NH3+
O
O-
L-alanine
N
N NH
N
purine
• carbohydrates, sugars, saccharides �!>50% of all biomass
• lipids �
!fats/oils!!terpenes!!steroids, etc.!
!
• amino acids, peptides, proteins �
• nucleotides, nucleosides, RNA, DNA����
![Page 14: Chem 109 C - People | Department of Chemistry - UC Santa ... · PDF fileChem 109 C ... holidays - no class Thanksgiving Wednesday, 11/26 Veteran’s day off transferred to 12/1](https://reader031.vdocuments.net/reader031/viewer/2022030507/5ab642e97f8b9a0f058da3aa/html5/thumbnails/14.jpg)
Synthetic (man-made) Compounds: • polymers (plastics):
!!!!!
!
• pharmaceuticals ���
N
O
H
NH
O
N
O
H
O
N
O
H
NH
O
N
O
H
N
O
H
KEVLAR
Ph
etc
Phetc
Ph Ph
polystyrene
N
SHN
OO
CO2Hpenicillin
NHCH3
ClCl
Zoloft
O
OH
O
O
aspirin
O
HO
HOH
N
morphine
![Page 15: Chem 109 C - People | Department of Chemistry - UC Santa ... · PDF fileChem 109 C ... holidays - no class Thanksgiving Wednesday, 11/26 Veteran’s day off transferred to 12/1](https://reader031.vdocuments.net/reader031/viewer/2022030507/5ab642e97f8b9a0f058da3aa/html5/thumbnails/15.jpg)
Review of Stereochemistry • Organic chemistry - chemistry of carbon, C �
• Valence number: 4
C C C
![Page 16: Chem 109 C - People | Department of Chemistry - UC Santa ... · PDF fileChem 109 C ... holidays - no class Thanksgiving Wednesday, 11/26 Veteran’s day off transferred to 12/1](https://reader031.vdocuments.net/reader031/viewer/2022030507/5ab642e97f8b9a0f058da3aa/html5/thumbnails/16.jpg)
Review of Stereochemistry • chirality�Wikipedia: An object or a system is chiral if it cannot be superposed on its mirror image. A chiral object and its mirror image are called enantiomorphs (Greek opposite forms) or, when referring to molecules, enantiomers. A non-chiral object is called achiral (sometimes also amphichiral) and can be superposed on its mirror image.!
![Page 17: Chem 109 C - People | Department of Chemistry - UC Santa ... · PDF fileChem 109 C ... holidays - no class Thanksgiving Wednesday, 11/26 Veteran’s day off transferred to 12/1](https://reader031.vdocuments.net/reader031/viewer/2022030507/5ab642e97f8b9a0f058da3aa/html5/thumbnails/17.jpg)
Review of Stereochemistry • chirality�Wikipedia: An object or a system is chiral if it cannot be superposed on its mirror image. A chiral object and its mirror image are called enantiomorphs (Greek opposite forms) or, when referring to molecules, enantiomers. A non-chiral object is called achiral (sometimes also amphichiral) and can be superposed on its mirror image.!
![Page 18: Chem 109 C - People | Department of Chemistry - UC Santa ... · PDF fileChem 109 C ... holidays - no class Thanksgiving Wednesday, 11/26 Veteran’s day off transferred to 12/1](https://reader031.vdocuments.net/reader031/viewer/2022030507/5ab642e97f8b9a0f058da3aa/html5/thumbnails/18.jpg)
Review of Stereochemistry
chirality in Euhadra snails�
• chirality�Wikipedia: An object or a system is chiral if it cannot be superposed on its mirror image. A chiral object and its mirror image are called enantiomorphs (Greek opposite forms) or, when referring to molecules, enantiomers. A non-chiral object is called achiral (sometimes also amphichiral) and can be superposed on its mirror image.!
![Page 19: Chem 109 C - People | Department of Chemistry - UC Santa ... · PDF fileChem 109 C ... holidays - no class Thanksgiving Wednesday, 11/26 Veteran’s day off transferred to 12/1](https://reader031.vdocuments.net/reader031/viewer/2022030507/5ab642e97f8b9a0f058da3aa/html5/thumbnails/19.jpg)
Review of Stereochemistry
![Page 20: Chem 109 C - People | Department of Chemistry - UC Santa ... · PDF fileChem 109 C ... holidays - no class Thanksgiving Wednesday, 11/26 Veteran’s day off transferred to 12/1](https://reader031.vdocuments.net/reader031/viewer/2022030507/5ab642e97f8b9a0f058da3aa/html5/thumbnails/20.jpg)
Review of Stereochemistry
C
CHO
HOH2C OHH
D-glyceraldehyde �
![Page 21: Chem 109 C - People | Department of Chemistry - UC Santa ... · PDF fileChem 109 C ... holidays - no class Thanksgiving Wednesday, 11/26 Veteran’s day off transferred to 12/1](https://reader031.vdocuments.net/reader031/viewer/2022030507/5ab642e97f8b9a0f058da3aa/html5/thumbnails/21.jpg)
Review of Stereochemistry
C
CHO
HOH2C OHH
D-glyceraldehyde �
C
CHO
CH2OHHOH
L-glyceraldehyde �
![Page 22: Chem 109 C - People | Department of Chemistry - UC Santa ... · PDF fileChem 109 C ... holidays - no class Thanksgiving Wednesday, 11/26 Veteran’s day off transferred to 12/1](https://reader031.vdocuments.net/reader031/viewer/2022030507/5ab642e97f8b9a0f058da3aa/html5/thumbnails/22.jpg)
Review of Stereochemistry
C
CHO
HOH2C OHH
D-glyceraldehyde �
C
CHO
CH2OHHOH
L-glyceraldehyde �
C
CHO
HOH2C HH C
CHO
CH2OHHH
![Page 23: Chem 109 C - People | Department of Chemistry - UC Santa ... · PDF fileChem 109 C ... holidays - no class Thanksgiving Wednesday, 11/26 Veteran’s day off transferred to 12/1](https://reader031.vdocuments.net/reader031/viewer/2022030507/5ab642e97f8b9a0f058da3aa/html5/thumbnails/23.jpg)
Chem 109 C �
Fall 2014���
Armen Zakarian�Office: Chemistry Bldn 2217 �
�
CHAPTER 21
![Page 24: Chem 109 C - People | Department of Chemistry - UC Santa ... · PDF fileChem 109 C ... holidays - no class Thanksgiving Wednesday, 11/26 Veteran’s day off transferred to 12/1](https://reader031.vdocuments.net/reader031/viewer/2022030507/5ab642e97f8b9a0f058da3aa/html5/thumbnails/24.jpg)
REMINDER
ALL TESTS WILL BE A ≈50-50 MIX OF REGULAR AND MULTIPLE- �
CHOICE QUESTIONS�
≈ 50 : 50�
![Page 25: Chem 109 C - People | Department of Chemistry - UC Santa ... · PDF fileChem 109 C ... holidays - no class Thanksgiving Wednesday, 11/26 Veteran’s day off transferred to 12/1](https://reader031.vdocuments.net/reader031/viewer/2022030507/5ab642e97f8b9a0f058da3aa/html5/thumbnails/25.jpg)
Carbohydrates: Introduction extremely widespread in biosphere, >50% of all biomass �
main functions: 1) source of energy�
2) cell-cell communication, recognition�
origin of name: “carbo” (C) + “hydrates” (H2O) = Cn(H2O)n = CnH2nOn�
main source: photosynthesis in plants �
photosynthesis reaction:�
![Page 26: Chem 109 C - People | Department of Chemistry - UC Santa ... · PDF fileChem 109 C ... holidays - no class Thanksgiving Wednesday, 11/26 Veteran’s day off transferred to 12/1](https://reader031.vdocuments.net/reader031/viewer/2022030507/5ab642e97f8b9a0f058da3aa/html5/thumbnails/26.jpg)
Carbohydrates: Introduction
sugars exist in cyclic form
![Page 27: Chem 109 C - People | Department of Chemistry - UC Santa ... · PDF fileChem 109 C ... holidays - no class Thanksgiving Wednesday, 11/26 Veteran’s day off transferred to 12/1](https://reader031.vdocuments.net/reader031/viewer/2022030507/5ab642e97f8b9a0f058da3aa/html5/thumbnails/27.jpg)
Carbohydrates: Classification
monosaccharides (simple carbohydrates) �
based on number of single carbohydrate units
![Page 28: Chem 109 C - People | Department of Chemistry - UC Santa ... · PDF fileChem 109 C ... holidays - no class Thanksgiving Wednesday, 11/26 Veteran’s day off transferred to 12/1](https://reader031.vdocuments.net/reader031/viewer/2022030507/5ab642e97f8b9a0f058da3aa/html5/thumbnails/28.jpg)
Carbohydrates: Classification
monosaccharides (simple carbohydrates) �
disaccharides �
based on number of single carbohydrate units
![Page 29: Chem 109 C - People | Department of Chemistry - UC Santa ... · PDF fileChem 109 C ... holidays - no class Thanksgiving Wednesday, 11/26 Veteran’s day off transferred to 12/1](https://reader031.vdocuments.net/reader031/viewer/2022030507/5ab642e97f8b9a0f058da3aa/html5/thumbnails/29.jpg)
Carbohydrates: Classification
monosaccharides (simple carbohydrates) �
oligosaccharides: 3 to 10 units ��polysaccharides: >10 units �
disaccharides �
based on number of single carbohydrate units
![Page 30: Chem 109 C - People | Department of Chemistry - UC Santa ... · PDF fileChem 109 C ... holidays - no class Thanksgiving Wednesday, 11/26 Veteran’s day off transferred to 12/1](https://reader031.vdocuments.net/reader031/viewer/2022030507/5ab642e97f8b9a0f058da3aa/html5/thumbnails/30.jpg)
Carbohydrates: Classification
aldoses �have aldehyde group�
ketoses �have ketone group�
based on carbonyl group
![Page 31: Chem 109 C - People | Department of Chemistry - UC Santa ... · PDF fileChem 109 C ... holidays - no class Thanksgiving Wednesday, 11/26 Veteran’s day off transferred to 12/1](https://reader031.vdocuments.net/reader031/viewer/2022030507/5ab642e97f8b9a0f058da3aa/html5/thumbnails/31.jpg)
Carbohydrates: Classification based on # of carbons in chain
O
H OH
OHH
OH
O
HO H
H OH
OHH
OH
H OH
HO H
H OH
O
OHH
OH
D-glucose � D-arabinose � D-erythrose �
![Page 32: Chem 109 C - People | Department of Chemistry - UC Santa ... · PDF fileChem 109 C ... holidays - no class Thanksgiving Wednesday, 11/26 Veteran’s day off transferred to 12/1](https://reader031.vdocuments.net/reader031/viewer/2022030507/5ab642e97f8b9a0f058da3aa/html5/thumbnails/32.jpg)
Carbohydrates: Classification The D and L notation
D-glucose �
H OH
HO H
H OH
O
OHH
OH
HO H
H OH
O
HO H
HO H
OH
L-glucose �
![Page 33: Chem 109 C - People | Department of Chemistry - UC Santa ... · PDF fileChem 109 C ... holidays - no class Thanksgiving Wednesday, 11/26 Veteran’s day off transferred to 12/1](https://reader031.vdocuments.net/reader031/viewer/2022030507/5ab642e97f8b9a0f058da3aa/html5/thumbnails/33.jpg)
Carbohydrates: Classification The D and L notation
D-glucose �
H OH
HO H
H OH
O
OHH
OH
HO H
H OH
O
HO H
HO H
OH
L-glucose �
OHHO
OHHO H
O
OH
D-glyceraldehyde � L-glyceraldehyde �
![Page 34: Chem 109 C - People | Department of Chemistry - UC Santa ... · PDF fileChem 109 C ... holidays - no class Thanksgiving Wednesday, 11/26 Veteran’s day off transferred to 12/1](https://reader031.vdocuments.net/reader031/viewer/2022030507/5ab642e97f8b9a0f058da3aa/html5/thumbnails/34.jpg)
Carbohydrates: Classification PROBLEM 1 (modified) �Classify the following monosaccharides �
arabinose �
HHOHO H
OH
OHO
H
OHHH OH
OH
HH
HOHO
O
OHHH OH
OH
HOH
HOH
OOH
mannose �sedoheptulose �
![Page 35: Chem 109 C - People | Department of Chemistry - UC Santa ... · PDF fileChem 109 C ... holidays - no class Thanksgiving Wednesday, 11/26 Veteran’s day off transferred to 12/1](https://reader031.vdocuments.net/reader031/viewer/2022030507/5ab642e97f8b9a0f058da3aa/html5/thumbnails/35.jpg)
Carbohydrates: Configurations of Aldoses
![Page 36: Chem 109 C - People | Department of Chemistry - UC Santa ... · PDF fileChem 109 C ... holidays - no class Thanksgiving Wednesday, 11/26 Veteran’s day off transferred to 12/1](https://reader031.vdocuments.net/reader031/viewer/2022030507/5ab642e97f8b9a0f058da3aa/html5/thumbnails/36.jpg)
Carbohydrates: Configurations of Aldoses Number of stereoisomers = 2n �n is number of stereocenters �
![Page 37: Chem 109 C - People | Department of Chemistry - UC Santa ... · PDF fileChem 109 C ... holidays - no class Thanksgiving Wednesday, 11/26 Veteran’s day off transferred to 12/1](https://reader031.vdocuments.net/reader031/viewer/2022030507/5ab642e97f8b9a0f058da3aa/html5/thumbnails/37.jpg)
Carbohydrates: Configurations of Aldoses Number of stereoisomers = 2n �n is number of stereocenters �
H OH
HO H
H OH
O
OHH
OH
D-glucose �
![Page 38: Chem 109 C - People | Department of Chemistry - UC Santa ... · PDF fileChem 109 C ... holidays - no class Thanksgiving Wednesday, 11/26 Veteran’s day off transferred to 12/1](https://reader031.vdocuments.net/reader031/viewer/2022030507/5ab642e97f8b9a0f058da3aa/html5/thumbnails/38.jpg)
Carbohydrates: Configurations of Aldoses Number of stereoisomers = 2n �n is number of stereocenters �
H OH
HO H
H OH
O
OHH
OH
D-glucose �
total number of stereoisomers for aldohexoses: ��
![Page 39: Chem 109 C - People | Department of Chemistry - UC Santa ... · PDF fileChem 109 C ... holidays - no class Thanksgiving Wednesday, 11/26 Veteran’s day off transferred to 12/1](https://reader031.vdocuments.net/reader031/viewer/2022030507/5ab642e97f8b9a0f058da3aa/html5/thumbnails/39.jpg)
Carbohydrates: Configurations of Aldoses Number of stereoisomers = 2n �n is number of stereocenters �
H OH
HO H
H OH
O
OHH
OH
D-glucose �
total number of stereoisomers for aldohexoses: ��total number of stereoisomers for D-aldohexoses:
![Page 40: Chem 109 C - People | Department of Chemistry - UC Santa ... · PDF fileChem 109 C ... holidays - no class Thanksgiving Wednesday, 11/26 Veteran’s day off transferred to 12/1](https://reader031.vdocuments.net/reader031/viewer/2022030507/5ab642e97f8b9a0f058da3aa/html5/thumbnails/40.jpg)
Carbohydrates: Configurations of Aldoses Rebuilding Table 21.1 (p. 982) �
![Page 41: Chem 109 C - People | Department of Chemistry - UC Santa ... · PDF fileChem 109 C ... holidays - no class Thanksgiving Wednesday, 11/26 Veteran’s day off transferred to 12/1](https://reader031.vdocuments.net/reader031/viewer/2022030507/5ab642e97f8b9a0f058da3aa/html5/thumbnails/41.jpg)
Carbohydrates: Configurations of Ketoses
![Page 42: Chem 109 C - People | Department of Chemistry - UC Santa ... · PDF fileChem 109 C ... holidays - no class Thanksgiving Wednesday, 11/26 Veteran’s day off transferred to 12/1](https://reader031.vdocuments.net/reader031/viewer/2022030507/5ab642e97f8b9a0f058da3aa/html5/thumbnails/42.jpg)
Carbohydrates: Epimers epimers: diastereomers that differ in configuration at only one asymmetric center
![Page 43: Chem 109 C - People | Department of Chemistry - UC Santa ... · PDF fileChem 109 C ... holidays - no class Thanksgiving Wednesday, 11/26 Veteran’s day off transferred to 12/1](https://reader031.vdocuments.net/reader031/viewer/2022030507/5ab642e97f8b9a0f058da3aa/html5/thumbnails/43.jpg)
Carbohydrates: Epimers PROBLEM 8 (modified) �How many stereoisomers are possible for��a. 2-ketohexose �
�b. an aldoheptose�
c. a ketotriose�