computational comparative genomics and genome evolution

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Computational Comparative Genomics and Genome Evolution •Guillaume Bourque and Pavel Pevzner,Genome-scale evolution: reconstructing gene orders in the ancestral species, Genome Research, 12:26-36, 2002 •Pavel Pevzner and Glenn Tesler, Human and mouse genomic sequences reveal extensive breakpont reuse in mammalian evolution, PNAS, 100:7672-7677, 2003 •Pavel Pevzner and Glenn Tesler, Genome rearrangements in Mammalian evolution: lessons from human and mouse genomes, Genome Research, 13:37- 45, 2003 •William Murphy, et al, The origin of human chromosome1 and its homologs in placental mammals, Genome Research, 12:1880-1888, 2002 •Elizabeth Housworth and John Postlethwait, Measures of synteny conservation between species pairs, Genetics, 162:441-448 http://www.cs.ucsd.edu/groups/bioinformatics

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Computational Comparative Genomics and Genome Evolution. Guillaume Bourque and Pavel Pevzner,Genome-scale evolution: reconstructing gene orders in the ancestral species, Genome Research, 12:26-36, 2002 - PowerPoint PPT Presentation

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  • Computational Comparative Genomics and Genome EvolutionGuillaume Bourque and Pavel Pevzner,Genome-scale evolution: reconstructing gene orders in the ancestral species, Genome Research, 12:26-36, 2002Pavel Pevzner and Glenn Tesler, Human and mouse genomic sequences reveal extensive breakpont reuse in mammalian evolution, PNAS, 100:7672-7677, 2003Pavel Pevzner and Glenn Tesler, Genome rearrangements in Mammalian evolution: lessons from human and mouse genomes, Genome Research, 13:37-45, 2003William Murphy, et al, The origin of human chromosome1 and its homologs in placental mammals, Genome Research, 12:1880-1888, 2002Elizabeth Housworth and John Postlethwait, Measures of synteny conservation between species pairs, Genetics, 162:441-448

    http://www.cs.ucsd.edu/groups/bioinformatics

  • Why are comparative maps important?

    Understanding chromosome organization and evolution

    Reconstruction of ancient vertebrate chromosomes

    Prediction of gene location in related species(Comparative positional candidate approach)

  • OBrien, et al, 1999, Science 286Mammalian Genomes

    Sheet1

    SpeciesOrderHaploid chromosome numberNo. mapped type I coding genesNo. mapped type II microsatellitesGenome length (cM)No. of conserved synthetic segments with human

    HumanPrimate23>30,000~8,0003,300--

    MouseRodentia206,9927,3771,450180

    RatRodentia21552~8,0001,500109

    CatCarnivora19~5002543,30032

    DogCarnivora392182762,70068

    MinkCarnivora15770--33

    CowCetartiodactyla30400-5001,2362,990-3,53250

    GoatCetartiodactyla302573073,100107

    SheepCetartiodactyla272545043,06340

    PigCetartiodactyla19369~1,0002,300-2,50047

    HorsePerissodactyla32533092,00047

    Sheet2

    Sheet3

  • An Ordered Comparative Map of the Cattle and Human Genomes:

    Harris A. Lewin, Ph.D., Mark Band, Ph.D.Department of Animal SciencesUniversity of Illinois at Urbana-Champaignhttp://cagst.animal.uiuc.eduhttp://www.life.uiuc.edu/biotech/

  • 0

    60

    120

    180

    BM3517

    DOCK2

    LCP2

    EST1024

    SMN1

    EST1065

    BM1225

    EST1466

    BTF3

    ILSTS85

    RM310

    TGLA126

    ITGA2

    BM713

    EST1289

    EST0008

    NNT

    SLC1A3

    BMS431

    BMS1120

    CDH6

    HSA5

    BTA20

    cR5000

    632

    356

    116

    cR3000

    HSA17

    BTA19

    0

    60

    120

    180

    240

    300

    360

    0

    420

    480

    540

    600

    MMD

    CLTCL2

    CA4

    EST1409

    SCYA8

    KIAA0727

    CDK5R1

    EVI2B

    NF1

    CRYBA1

    EST1430

    R02283

    EST1464

    TP53

    PAFAH1B1

    ATP2A3

    CHRNE

    SLC2A4

    ACADVL

    ARRB2

    PLI

    PEDF

    ILSTS14

    EST1546

    EST0428

    NDP52

    U08018

    U20085

    OARFCB193

    THRA

    RPL19

    PSA

    PPP1R1B

    IGFBP4

    CNP

    CCNG1**

    PYY

    PSMC5

    IDVGA47

    MAP2C

    PECAM1

    TBCD

    PDE6G

    EST0101

    P4HB

    URB59

    TK1

    AANAT

    ICT1

    GRB2

    H3F3B

    BMC1013

    KCNJ2

    EST0327

    PRKCA

    cR5000

    365

    269

    54

    24

    103

    340

    309

    HSA5-609

    404

    405

    537

    435

    cR3000

    0

    60

    120

    0

    60

    120

    CLECSF1

    GLG1

    AA908013

    IDVGA31

    AF026954

    ILSTS21

    EST0605

    EST1469

    APRT

    EST1578

    EST0004A

    ADCY7

    SLC6A2

    INRA121

    KATNB1

    HAUT14

    ATP6DV

    HSD11B2

    EST1302

    CDH3

    BM7109

    EST0591

    EST0823

    EST1042

    EST1399

    ZFP36

    BLVRB

    CD79A

    PAFAH1B3

    IDVGA55

    VASP

    CAPN4

    PLAUR

    APOE

    EST1354

    BAX

    L04188

    LCAT*

    HSA16

    HSA19

    BTA18

    cR5000

    434

    490

    344

    373

    405

    411

    216

    269

    405

    cR3000

    MIA

    SC4MOL

    EST0147

    NPY2R

    URB48

    60

    0

    0

    0

    60

    120

    180

    240

    EDNRA

    BMS2220

    INRA193

    EST1050

    IL2

    FGF2

    OARFCB48

    BM9138

    PMBP

    ETH185

    PPID*

    EST0822

    IDVGA40

    EST0548

    URB2

    BM8125

    EST2351*

    CD36L1

    COX6A1**

    KRT8

    PLA2G1B

    CRYBB3

    ADRBK2

    EST1517

    EST1612

    BM1233

    LIF

    MTMR3

    PIK4CA

    HSA22

    HSA4

    HSA12

    BTA17

    cR5000

    662

    615

    561

    574

    645

    485

    426

    427

    87

    28

    HSA6-132

    cR3000

    0

    60

    120

    180

    240

    300

    0

    60

    MYOG

    ATP2B4

    FMOD

    EST0804

    BM6430

    EST0397

    HUJ614

    C4BPB

    BMS1348

    BM121

    BM1311

    TGLA53

    EPHX1

    EST1875

    SRP9

    RGS7

    SELE

    SELL

    IDVGA49

    PLOD

    ISG15

    GNB1

    ELA1

    TNFRSF12

    SDR1

    MSF

    PTGS2

    EST1095

    KCNH1

    HUJ625

    NCF2

    RGS16

    BM719

    DDX9

    EST1013

    KIAA0106

    EST0181

    BTA16

    EST0339*

    HSA1

    cR5000

    671

    684

    711

    746

    611

    57

    16

    642

    624

    697

    cR3000

    719

    293

    376

    642

    465

  • Genes that are closely linked in one species tend to be closely linked in other species.Genes that are loosely linked in one species tend to be unlinked in other species.Closely related species have accumulated fewer rearrangements and have many long conserved segments.Distantly related species have accumulated many rearrangements and have many short conserved segmentsNadeau and Sankoff, 1998

  • COMPARATIVE MAPPING METHODSWomack and Kata

  • J.E.Womack et al.Cattle and Mouse on Human Comparative MapHSA7HSA13Disrupted SyntenyConserved Synteny

  • HSA1p16 23Prediction of Map Location

  • Comparative Mapping by Annotation and Sequence SimilaritySequence similarity search (BLAST) of human Unigene database with candidate sequence

    Identify human ortholog marker

    Identify map position of the ortholog marker

    Place the candidate sequence on human-(cattle or pig) synteny mapCOMPASS

  • 060120180BM3517DOCK2LCP2EST1024SMN1EST1065BM1225EST1466BTF3ILSTS85RM310TGLA126ITGA2BM713EST1289EST0008NNTSLC1A3BMS431BMS1120CDH6BTA20cR5000cR3000BTA190601201802403003600420480540600MMDCLTCL2CA4EST1409SCYA8KIAA0727CDK5R1EVI2BNF1CRYBA1EST1430R02283EST1464TP53PAFAH1B1ATP2A3CHRNESLC2A4ACADVLARRB2PLIPEDFILSTS14EST1546EST0428NDP52U08018U20085OARFCB193THRARPL19PSAPPP1R1BIGFBP4CNPCCNG1**PYYPSMC5IDVGA47MAP2CPECAM1TBCDPDE6GEST0101P4HBURB59TK1AANATICT1GRB2H3F3BBMC1013KCNJ2EST0327PRKCAcR5000cR3000060120060120CLECSF1GLG1AA908013IDVGA31AF026954ILSTS21EST0605EST1469APRTEST1578EST0004AADCY7SLC6A2INRA121KATNB1HAUT14ATP6DVHSD11B2EST1302CDH3BM7109EST0591EST0823EST1042EST1399ZFP36BLVRBCD79APAFAH1B3IDVGA55VASPCAPN4PLAURAPOEEST1354BAXL04188LCAT*BTA18cR5000cR3000MIASC4MOLEST0147NPY2RURB486000060120180240EDNRABMS2220INRA193EST1050IL2FGF2OARFCB48BM9138PMBPETH185PPID*EST0822IDVGA40EST0548URB2BM8125EST2351*CD36L1COX6A1**KRT8PLA2G1BCRYBB3ADRBK2EST1517EST1612BM1233LIFMTMR3PIK4CABTA17cR5000cR3000060120180240300060MYOGATP2B4FMODEST0804BM6430EST0397HUJ614C4BPBBM1348BM121BM1311TGLA53EPHX1EST1875SRP9RGS7SELESELLIDVGA49PLODISG15GNB1ELA1TNFRSF12SDR1MSFPTGS2EST1095KCNH1HUJ625NCF2RGS16BM719DDX9EST1013KIAA0106EST0181BTA16EST0339*cR5000cR3000HSA16HSA19431490344373406411216269405HSA22HSA4HSA126626155615746454854264278728HSA6-133HSA16716847117476115716642624697723HSA5632356116Band et al, 2000

  • Human-Cattle COMPASS II Base Table

  • 176.6186.3187.6191.6318.09248.34256.94208.395End3EndCattle BAC cloneCattle ESTHAS 1 (Mb)BTA 16 (cR)Cattle BAC clone

    FINBIN_ref

    SymbolHuman ChrcR3000 - initialcR3001- finalGB4BTALinkagecR5000

    GNB11015.88?2,3,16,28??

    ISG151015.88?2,3,16,28??

    GNB1115.8915.8916-5716B173.42

    ISG15115.8915.8916-5716B171.52

    GNB1115.920.63516-5716B?

    ISG15115.920.63516-5716B?

    TNFRSF12120.64525.3716-5716B?

    TNFRSF12125.3825.3816-5716B181.79

    TNFRSF12125.3938.3516-5716B?

    PLOD138.3651.3116-5716B?

    SDR1138.3651.3116-5716B?

    PLOD151.3251.3216-5716B161.12

    SDR1151.3251.3216-5716B193.34

    PLOD151.335416-5716B?

    SDR1151.335416-5716B?

    ELA1154.0156.6716-5716B?

    ELA1156.6856.6816-5716B175.59

    ELA1156.6960.065?2,3,16,28??

    MFAP2160.07563.44?2,3,16,28??

    MFAP2163.4563.4563-1012C265.56

    MFAP2163.4670.5263-1012C?

    CDC42170.5377.5863-1012C?

    CDC42177.5977.5963-1012C242.2

    CDC42177.679.45563-1012C?

    EST1205179.46581.3163-1012C?

    EST1205181.3281.3263-1012C229.3

    EST1205181.3382.47563-1012C?

    EST0622182.48583.6263-1012C?

    EST0622183.6383.6363-1012C217.65

    EST0622183.6484.43563-1012C?

    EST0013184.44585.2363-1012C?

    EST0013185.2485.2463-1012C195.07

    EST0013185.2586.1463-1012C?

    EST1436186.1587.0363-1012C?

    EST1436187.0487.0463-1012C190.55

    EST1436187.0589.963-1012C?

    PPP1R8189.9192.7563-1012C?

    PPP1R8192.7692.7663-1012C187.38

    PPP1R8192.7793.73563-1012C?

    PTP4A2193.74594.763-1012C?

    PTP4A2194.7194.7163-1012C180.05

    PTP4A2194.7295.7863-1012C?

    LAPTM5195.7996.8463-1012C?

    LAPTM5196.8596.8563-1012C183.18

    LAPTM5196.8698.92563-1012C?

    LCK198.935100.9963-1012C?

    LCK110110163-1012C175.28

    LCK1101.01109.86?2,3,16,28??

    EST10311109.87118.71?2,3,16,28??

    EST10311118.72118.72119-5893A252

    EST10311118.73118.875119-5893A?

    ACF71118.885119.02119-5893A?

    ACF71119.03119.03119-5893A287

    ACF71119.04124.625119-5893A?

    TIE1124.635130.21119-5893A?

    TIE1130.22130.22119-5893A236

    TIE1130.23147.86119-5893A?

    JUN1147.87165.49119-5893A?

    JUN1165.5165.5119-5893A199

    JUN1165.51168.64119-5893A?

    PGM11168.65171.77119-5893A?

    PGM11171.78171.78119-5893A190

    PGM11171.79179.01119-5893A?

    RPE651179.02186.23119-5893A?

    RPE651186.24186.24119-5893A198

    RPE651186.25212.255119-5893A?

    PRKACB1212.265238.26119-5893A?

    PRKACB1238.27238.27119-5893A169

    PRKACB1238.28242.895119-5893A?

    ACTR21242.905247.51119-5893A?

    ACTR21247.52247.52119-5893A157

    ACTR21247.53247.57119-5893A?

    GBP11247.58247.61119-5893A?

    GBP11247.62247.62119-5893A144

    GBP11247.63255.54119-5893A?

    EST18061255.55263.45119-5893A?

    EST18061263.46263.46119-5893A143

    EST18061263.47265.065119-5893A?

    F31265.075266.66119-5893A?

    F31266.67266.67119-5893A167

    F31266.68279.735119-5893A?

    DBT1279.745292.79119-5893A?

    DBT1292.8292.8119-5893A168

    DBT1292.81293.28119-5893A?

    VCAM11293.29293.75119-5893A?

    VCAM11293.76293.76119-5893A136

    VCAM11293.77294.215119-5893A?

    EDG11294.225294.66119-5893A?

    EDG11294.67294.67119-5893A133

    EDG11294.68299.81119-5893A?

    AMY2A1299.82304.94119-5893A?

    AMY2A1304.95304.95119-5893A126

    AMY2A1304.96322.04119-5893A?

    CSF11322.05339.12119-5893A?

    CSF11339.13339.13119-5893A110

    CSF11339.14347.86119-5893A?

    OVGP11347.87356.58119-5893A?

    OVGP11356.59356.59119-5893A115

    OVGP11356.6360.5119-5893A?

    CAPZA11360.51364.4119-5893A?

    CAPZA11364.41364.41119-5893A108

    CAPZA11364.42367.64119-5893A?

    NRAS1367.65370.86119-5893A?

    NRAS1370.87370.87119-5893A115

    NRAS1370.88372.275119-5893A?

    TSHB1372.285373.67119-5893A?

    TSHB1373.68373.68119-5893A105

    TSHB1373.69380.41119-5893A?

    NGFB1380.42387.13119-5893A?

    NGFB1387.14387.14119-5893A114

    NGFB1387.15462.71119-5893A?

    MUC11462.72538.27119-5893A?

    MUC11538.28538.28119-5893A63

    MUC11538.29540.02119-5893A?

    S100A71540.03541.75119-5893A?

    S100A71541.76541.76119-5893A67

    S100A71541.77546.055119-5893A?

    PSMD41546.065550.34119-5893A?

    PSMD41550.35550.35119-5893A70

    PSMD41550.36551.205119-5893A?

    KIAA07361551.215552.05119-5893A?

    KIAA07361552.06552.06119-5893A90

    KIAA07361552.07552.42119-5893A?

    S100A41552.43552.77119-5893A?

    S100A41552.78552.78119-5893A67

    S100A41552.79553.245119-5893A?

    EST05391553.255553.7119-5893A?

    EST05391553.71553.71119-5893A71

    EST05391553.72553.8119-5893A?

    RPS191553.81553.88119-5893A?

    RPS191553.89553.89119-5893A72

    RPS191553.9571.555119-5893A?

    FCGR2B1571.565589.21119-5893A?

    FCGR2B1589.22589.22119-5893A11

    FCGR2B1589.23600.16?2,3,16,28??

    SELE1600.17611.09?2,3,16,28??

    SELL1600.17611.09?2,3,16,28??

    SELE1611.1611.1611.1 - ?16B127.76

    SELL1611.1611.1611.1 - ?16B137.86

    SELE1611.11617.37?2,3,16,28??

    SELL1611.11617.37?2,3,16,28??

    KIAA01061617.38623.63?2,3,16,28??

    KIAA01061623.64623.64624-64216B318.09

    KIAA01061623.65624.92624-64216B?

    EST10131624.93626.19624-64216B?

    EST10131626.2626.2624-64216B264.84

    EST10131626.21630.345624-64216B?

    RGS161630.355634.48624-64216B?

    RGS161634.49634.49624-64216B248.34

    RGS161634.5635.1624-64216B?

    DDX91635.11635.7624-64216B?

    DDX91635.71635.71624-64216B256.94

    DDX91635.72637.54624-64216B?

    PTGS21637.55639.36624-64216B?

    PTGS21639.37639.37624-64216B208.39

    PTGS21639.38640.58624-64216B?

    NCF21640.59641.78624-64216B?

    NCF21641.79641.79624-64216B248.24

    NCF21641.8656.355?2,3,16,28??

    FMOD1656.365670.91?2,3,16,28??

    FMOD1670.92670.92671-68416A40.8

    FMOD1670.93671.16671-68416A?

    MYOG1671.17671.39671-68416A?

    MYOG1671.4671.4671-68416A0

    MYOG1671.41672.69671-68416A?

    ATP2B41672.7673.97671-68416A?

    ATP2B41673.98673.98671-68416A11.8

    ATP2B41673.99678.925671-68416A?

    EST08041678.935683.86671-68416A?

    EST08041683.87683.87671-68416A52.72

    EST08041683.88684.125671-68416A?

    C4BPB1684.135684.37671-68416A?

    C4BPB1684.38684.38671-68416A69.16

    C4BPB1684.39690.58?2,3,16,28??Gonna ask Harris about this, I'm not totally sure this is the way to do it, probably it is, but I want to be sure!!

    EST03391690.59696.77?2,3,16,29??

    EST03391696.78696.78696.78-?16B213.98

    EST03391696.79704.065?2,3,16,29??

    EST18751704.075711.34?2,3,16,29??

    EST18751711.35711.35711-71916B90.7

    EST18751711.36715.02711-71916B?

    EPHX11715.03718.68711-71916B?

    EPHX11718.69718.69711-71916B77.3

    EPHX11718.7728.19?2,3,16,29??

    GUK11719.555720.39?16,28??Leave this whole segment out!!!! Prediction doesn't make sense, 16 and 28 ?????? The rule was: if it's not in an existing segment it could be anywhere where we have predictions for: 2,3,16 & 28 but in this case..leave it out, it's a double starred marker!

    GUK11720.4720.4711-7207A0Rule: Leave ** markers out!!!!

    GUK11720.41729.045?16,28??

    KIAA00161728.19737.68?2,3,16,29??

    KIAA00161737.69737.69738-74628A0

    KIAA00161737.7739.17738-74628A?

    CHS11739.18740.64738-74628A?

    CHS11740.65740.65738-74628A31.1

    CHS11740.66743.415738-74628??

    RGS71743.425746.17738-74628??

    RGS71746.18746.18746.18-?16B123.36DISCREPANCY BETWEEN OLD AND NEW MAPS - CHECK

    RGS71746.19746.235738-74628??

    CHRM31746.245746.28738-74628??

    CHRM31746.29746.29738-74628A50.4

    ODC12044.25?2,11??

    ODC1244.2644.2644-1002,11A264.41How can this happen??? You have a map prediction!!! How can you not know the chromosome prediction????? It should only be 11 since it is mapped on BTA 11 How can this happen?????

    ODC1244.2744.52544-10011A?

    X95906244.53544.7844-10011A?

    X95906244.7944.7944-10011A273.1

    X95906244.845.54544-10011A?

    RRM2245.55546.2944-10011A?

    RRM2246.346.344-10011A268.7

    RRM2246.3158.2144-10011A?

    KIAA0235258.2270.1144-10011A?

    KIAA0235270.1270.1244-10011A232.34

    KIAA0235270.1380.0344-10011A?

    EST1262280.0489.9344-10011A?

    EST1448280.0489.9344-10011A?

    HADHB280.0489.9344-10011A?

    EST1262289.9489.9444-10011A201.99

    EST1448289.9489.9444-10011A193.76

    HADHB289.9489.9444-10011A190.19

    EST1262289.9593.9444-10011A?

    EST1448289.9593.9444-10011A?

    HADHB289.9593.9444-10011A?

    KIAA0007293.9597.9344-10011A?

    KIAA0007297.9497.9444-10011A131.49

    KIAA0007297.9598.6444-10011A?

    HADHA298.6599.3344-10011A?

    HADHA299.3499.3444-10011A193

    HADHA299.3599.49544-10011A?

    PPP1CB299.50599.6444-10011A?

    PPP1CB299.6599.6544-10011A187

    PPP1CB299.66118.09?2,11??

    PPM1B2118.1136.52?2,11??

    PPM1B2136.53136.53137-15911A41.02

    PPM1B2136.54139.515137-15911A?

    MSH22139.525142.49137-15911A?

    MSH22142.5142.5137-15911A54.55

    MSH22142.51142.6137-15911A?

    EST05552142.61142.69137-15911A?

    EST05552142.7142.7137-15911A45.69

    EST05552142.71145.805137-15911A?

    LHCGR2145.815148.9137-15911A?

    LHCGR2148.91148.91137-15911A55.77

    LHCGR2148.92149.835137-15911A?

    NRXN12149.845150.75137-15911A?

    NRXN12150.76150.76137-15911A55.77

    NRXN12150.77154.72137-15911A?

    FSHR2154.73158.67137-15911A?

    FSHR2158.68158.68137-15911A55.82

    FSHR2158.69178.445?2,11A?

    UGP22178.455198.2?2,11A?

    UGP22198.21198.21198.21 - ?11A128.65

    UGP22198.22204.605?2,11??

    XDH2204.615210.99?2,11??

    XDH2211211211 - ?11????It's on the new map, but has no map prediction, that's strange, gonna find out what happened there!!

    XDH2211.01252.615?2,11??

    EST05792252.625294.22?2,11??

    EST05792294.23294.23294-41111A79.92

    EST05792294.24294.84294-41111A?

    GGCX2294.85295.44294-41111A?

    GGCX2295.45295.45294-41111A79.92

    GGCX2295.46300.035294-41111A?

    EST18172300.045304.61294-41111A?

    EST18172304.62304.62294-41111A79.71

    EST18172304.63357.195294-41111A?

    IL1A2357.205409.76294-41111A?

    IL1A2409.77409.77294-41111A80.91

    IL1A2409.78410.495294-41111A?

    IL1B2410.505411.21294-41111A?

    IL1RN2410.505411.21294-41111A?

    IL1B2411.22411.22294-41111A81.34

    IL1RN2411.22411.22294-41111A83.98

    IL1B2411.23413.715?2,11??

    IL1RN2411.23413.715?2,11??

    ACTR32413.725416.2?2,11??

    ACTR32416.21416.21416.21-?2C6.48Forgot to put on Old map, should have been there, my mistake!

    ACTR32416.22492.295?2,11??

    KIAA01372492.305568.37?2,11??

    KIAA01372568.38568.38568-5872B40.47

    KIAA01372568.39577.795568-5872B?

    FRZB2577.805587.2568-5872B?

    FRZB2587.21587.21568-5872B0

    FRZB2587.22601.975?2,11??

    STAT12601.985616.73?2,11??

    STAT12616.74616.74617-6332C0

    STAT12616.75621.13617-6332C?

    EST12392621.14625.51617-6332C?

    EST12392625.52625.52617-6332C38.69

    EST12392625.53629.3617-6332C?

    CD282629.31633.07617-6332C?

    CD282633.08633.08617-6332C48.31

    CD282633.09654.055?2,11??

    ATIC2654.065675.02?2,11??

    ATIC2675.03675.03675-6832C156.04

    ATIC2675.04677.22675-6832C?

    IL8RB2677.23679.4675-6832C?

    IL8RB2679.41679.41675-6832C102.24

    IL8RB2679.42680.07675-6832C?

    ARPC22680.08680.72675-6832C?

    ARPC22680.73680.73675-6832C102.74

    ARPC22680.74681.705675-6832C?

    DES2681.715682.67675-6832C?

    DES2682.68682.68675-6832C96.75

    DES2682.69705.12?2,11??

    SAG2705.13727.55?2,11??

    SAG2727.56727.56?2,11??This marker is there but is a double starred marker: Rule ==> leave out!!!

    RPS253038.44?1,22??

    RPS25338.4538.4538-4422A81.7

    RPS25338.4641.21538-4422A?

    OXTR341.22543.9738-4422A?

    OXTR343.9843.9838-4422A89

    OXTR343.9947.63?1,22??

    PPARG347.6451.27?1,22??

    PPARG351.2851.2851-5722B93.18

    PPARG351.2954.34551-5722B?

    HRH1354.35557.451-5722B?

    HRH1357.4157.4151-5722B82.61

    HRH1357.4297.41?1,22??

    GC20397.42137.4?1,22??

    GC203137.41137.41137 - ?22A45.5

    GC203137.42146.115?1,22??

    MAP43146.125154.81?1,22??

    MAP43154.82154.82152-19022B63.33

    MAP43154.83155.775152-19022B?

    EST17833155.785156.72152-19022B?

    EST17833156.73156.73152-19022B63.75

    EST17833156.74157.375152-19022B?

    UQCRC13157.385158.01152-19022B?

    UQCRC13158.02158.02152-19022B67.74

    UQCRC13158.03158.045152-19022B?

    AMT3158.055158.06152-19022B?

    AMT3158.07158.07152-19022B57.87

    AMT3158.08159.25152-19022B?

    GNAT13159.26160.42152-19022B?

    GNAT13160.43160.43152-19022B54.1

    GNAT13160.44175.125152-19022B?

    EST12003175.135189.81152-19022B?

    EST12003189.82189.82152-19022B25.3

    EST12003189.83199.455?1,22??

    UBE1C3199.465209.08?1,22??

    UBE1C3209.09209.09209 - ?22A127.2

    UBE1C3209.1236.235?1,22??

    POU1F13236.245263.37?1,22??

    POU1F13263.38263.38263-3631A98.02

    POU1F13263.39313.19263-3631A?

    ALCAM3313.2362.99263-3631A?

    ALCAM3363363263-3631A102.45

    ALCAM3363.01382.755?1,22??

    TACTILE3382.765402.5?1,22??

    TACTILE3402.51402.51403-4401B98.2

    TACTILE3402.52406.415403-4401B?

    ATP6A13406.425410.31403-4401B?

    ATP6A13410.32410.32403-4401B0

    ATP6A13410.33421.14403-4401B?

    PDIR3421.15431.95403-4401B?

    PDIR3431.96431.96403-4401B48.82

    PDIR3431.97435.805403-4401B?

    UMPS3435.815439.64403-4401B?

    UMPS3439.65439.65403-4401B62.19

    UMPS3439.66449.605?1,22??

    RAB73449.615459.55?1,22??

    RAB73459.56459.56?22B60.92DISCREPANCY BETWEEN OLD AND NEW MAPS - CHECK

    RAB73459.57459.12?22B?CHECK THE TWO MAPS AROUND THIS POSITION

    X700193459.13458.67?22B?THERE ARE 3 MARKERS AT 458, 459,460 IN THE NEW WHICH IS NOT FULLY

    X700193458.68458.68?22B0ACCOUNTED FOR IN THE OLD MAP

    X700193458.69459.47?22B?

    RHO3459.48460.25?22B?

    RHO3460.26460.26?22B89.87

    RHO3460.27466.98?1,22??

    TF3466.99473.69?1,22??

    TF3473.7473.7474-7001B202.14

    TF3473.71480.93474-7001B?

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    COPB23488.17493.135474-7001B?

    EST06173493.145498.1474-7001B?

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    EST06173498.12501.325474-7001B?

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    EST12933504.55510.425474-7001B?

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    TRPC13516.32516.36474-7001B?

    KIAA03323516.37516.4474-7001B?

    KIAA03323516.41516.41474-7001B187.78

    KIAA03323516.42539.025474-7001B?

    AGTR13529.41542.38474-7001B?

    AGTR13542.39542.39474-7002B29.3DISCARD

    AGTR13542.4552.015474-7001B?

    P2RY13539.035561.63474-7001B?

    P2RY13561.64561.64474-7001B157.78

    P2RY13561.65575.065474-7001B?

    IL12A3575.075588.48474-7001B?

    IL12A3588.49588.49474-7001B147.18

    IL12A3588.5643.79474-7001B?

    AHSG3643.8699.08474-7001B?

    AHSG3699.09699.09474-7001B105.2

    AHSG3699.1699.79474-7001B?

    KNG3699.8700.48474-7001B?

    KNG3700.49700.49474-7001B92.14

    WDR14061.22?6,17??

    WDR1461.2361.2361 - ?6A350.46

    WDR1461.24125.945?6,17??

    UGDH4125.955190.65?6,17??

    UGDH4190.66190.66191-4256A161.4

    UGDH4190.67253.46191-4256A?

    KDR4253.47316.25191-4256A?

    KDR4316.26316.26191-4256A230.4

    KDR4316.27325.3191-4256A?

    EST11614325.31334.33191-4256A?

    EST11614334.34334.34191-4256A251.2

    EST11614334.35367.715191-4256A?

    GNRHR4367.725401.08191-4256A?

    GNRHR4401.09401.09191-4256A261.02

    GNRHR4401.1410.755191-4256A?

    STE4410.765420.41191-4256A?

    STE4420.42420.42191-4256A278.02

    STE4420.43422.485191-4256A?

    GRO24422.495424.54191-4256A?

    GRO24424.55424.55191-4256A282.33

    GRO24424.56431.07?6,17??

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    SPP14437.59437.59438 - ?6A117.1

    SPP14437.6446.73?6,17??

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    PTPN134455.88456.445?6,17??

    IBSP4456.455457.01?6,17??

    IBSP4457.02457.02457-5086A117.1

    IBSP4457.03482.065457-5086A?

    PAPSS14482.075507.1457-5086A?

    PAPSS14507.11507.11457-5086A94.4

    PAPSS14507.12507.58457-5086A?

    EST14104507.59508.04457-5086A?

    EST14104508.05508.05457-5086A96.4

    EST14104508.06534.36?6,17??

    FGF24534.37560.66?6,17??

    FGF24560.67560.67561-57417B12.6

    FGF24560.68567.515561-57417B?

    PMBP4567.525574.35561-57417B?

    PMBP4574.36574.36561-57417B49.6

    PMBP4574.37594.565?6,17??

    EST10504594.575614.76?6,17??

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    EDNRA4630.23630.23615-66217A56.72

    EDNRA4630.24634.63615-66217A?

    EST01474634.64639.02615-66217A?

    EST01474639.03639.03615-66217A6.6

    EST01474639.04641.865615-66217A?

    NPY2R4641.875644.69615-66217A?

    NPY2R4644.7644.7615-66217A10.49

    NPY2R4644.71644.8615-66217A?

    PPID4644.81644.89615-66217C?

    PPID4644.9644.9615-66217C19.3

    PPID4644.91653.52615-66217C?

    SC4MOL4653.53662.13615-66217A?

    SC4MOL4662.14662.14615-66217A0

    CDH650116.08?7,20??

    CDH65116.09116.09116-35620A206.87

    CDH65116.1120.225116-35620A?

    SLC1A35120.235124.35116-35620A?

    SLC1A35124.36124.36116-35620A145.87

    SLC1A35124.37198.435116-35620A?

    EST00085198.445272.5116-35620A?

    EST00085272.51272.51116-35620A94.98

    EST00085272.52280116-35620A?

    ITGA25280.01287.48116-35620A?

    ITGA25287.49287.49116-35620A89.12

    ITGA25287.5293.93116-35620A?

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    EST14665300.37300.37116-35620A25.17

    EST14665300.38318.835116-35620A?

    EST10245318.845337.29116-35620A?

    EST10245337.3337.3116-35620A20.77

    EST10245337.31342.13116-35620A?

    SMN15342.14346.95116-35620A?

    SMN15346.96346.96116-35620A23.36

    SMN15346.97351.355116-35620A?

    BTF35351.365355.74116-35620A?

    BTF35355.75355.75116-35620A43.07

    BTF35355.76376.61?7,20??

    RASA15376.62397.46?7,20??

    RASA15397.47397.47397-4357C12

    RASA15397.48416.445397-4357C?

    PAM5416.455435.41397-4357C?

    PAM5435.42435.42397-4357C99.6

    PAM5435.43469.44?7,20??

    PPP2CA5469.45503.45?7,20??

    PPP2CA5503.46503.46503 - ?7B26.3

    PPP2CA5503.47506.455?7,20??

    IL35506.465509.44?7,20??

    IL35509.45509.45509 - ?7A105.91

    IL35509.46515.03?7,20??

    HNRPA05515.04520.6?7,20??

    HNRPA05520.61520.61521-6097B48.3

    HNRPA05520.62524.335521-6097B?

    ARA545524.345528.05521-6097B?

    ARA545528.06528.06521-6097B64.3

    ARA545528.07528.165521-6097B?

    GNPI5528.175528.26521-6097B?

    GNPI5528.27528.27521-6097B66.8

    GNPI5528.28528.785521-6097B?

    CD145528.795529.29521-6097B?

    CD145529.3529.3521-6097B72

    CD145529.31540.725521-6097B?

    EST10965540.735552.14521-6097B?

    EST10965552.15552.15521-6097B105

    EST10965552.16566.33521-6097B?

    GPX35566.34580.5521-6097B?

    GPX35580.51580.51521-6097B144

    GPX35580.52581.825521-6097B?

    CD745581.835583.13521-6097B?

    CD745583.14583.14521-6097B180

    CD745583.15583.97521-6097B?

    SPARC5583.98584.79521-6097B?

    SPARC5584.8584.8521-6097B153

    SPARC5584.81588.18521-6097B?

    IL12B5588.19591.55521-6097B?

    IL12B5591.56591.56521-6097B182

    IL12B5591.57600.22521-6097B?

    GABRA15600.23608.87521-6097B?

    GABRA15608.88608.88521-6097B186

    GABRA15608.89620.25?7,20??

    DOCK25620.26631.61?7,20??

    LCP25620.26631.61?7,20??

    DOCK25631.62631.62632 - ?20A14.98

    LCP25631.62631.62632 - ?20A10.65

    DOCK25631.63634.28?7,20??

    LCP25631.63634.28?7,20??

    SLC34A15634.29636.93?7,20??

    SLC34A15636.94636.94637-6467A173.91

    SLC34A15636.95636.99637-6467A?

    F125637637.03637-6467A?

    F125637.04637.04637-6467A182.29

    F125637.05641.495637-6467A?

    HNRPAB5641.505645.94637-6467A?

    HNRPAB5645.95645.95637-6467A181.91

    EST03956039.17?9,23??

    EST0395639.1839.1839-11823A352.06

    EST0395639.1940.6439-11823A?

    F13A1640.6542.0939-11823A?

    F13A1642.142.139-11823A328.11

    F13A1642.1166.29539-11823A?

    PRL666.30590.4839-11823A?

    PRL690.4990.4939-11823A289.73

    PRL690.596.0239-11823A?

    CMAH696.03101.5439-11823A?

    CMAH6101.55101.5539-11823A271.26

    CMAH6101.56109.2239-11823A?

    MOG6109.23116.8839-11823A?

    MOG6116.89116.8939-11823A259.54

    MOG6116.9117.60539-11823A?

    TNF6117.615118.3139-11823A?

    TNF6118.32118.3239-11823A234.07

    TNF6118.33118.37539-11823A?

    DRB36118.385118.4239-11823A?

    DRB36118.43118.4339-11823A229.98

    DRB36118.44118.48?9,23??

    LMP76118.49118.52?9,23??

    LMP76118.53118.53119-20023A49.76

    LMP76118.54128.045119-20023A?

    PIM16128.055137.55119-20023A?

    PIM16137.56137.56119-20023A102.28

    PIM16137.57137.61119-20023A?

    EST04416137.62137.65119-20023A?

    EST04416137.66137.66119-20023A86.98

    EST04416137.67137.71119-20023A?

    SFRS36137.72137.75119-20023A?

    SFRS36137.76137.76119-20023A96.07

    SFRS36137.77140.855119-20023A?

    CYP21A26140.865143.94119-20023A?

    DMA6140.865143.94119-20023A?

    CYP21A26143.95143.95119-20023A234.07

    DMA6143.95143.95119-20023A66.79

    CYP21A26143.96147.35119-20023A?

    DMA6143.96147.35119-20023A?

    RDS6147.36150.74119-20023A?

    RDS6150.75150.75119-20023A160.87

    RDS6150.76152.78119-20023A?

    GUCA1A6152.79154.8119-20023A?

    GUCA1A6154.81154.81119-20023A136.56

    GUCA1A6154.82159.67119-20023A?

    VEGF6159.68164.52119-20023A?

    VEGF6164.53164.53119-20023A159.85

    VEGF6164.54182.12119-20023A?

    GSTA26182.13199.7119-20023A?

    GSTA26199.71199.71119-20023A222.18

    GSTA26199.72199.945119-20023A?

    MCM36199.955200.17119-20023A?

    MCM36200.18200.18119-20023A213.85

    MCM36200.19253.68?9,23??

    EST16066253.69307.17?9,23??

    EST16066307.18307.18307 - ?9A7.5

    EST16066307.19384.6?9??

    DDO6384.61462.01?9??

    DDO6462.02462.02462-4899B0

    DDO6462.03475.535462-4899B?

    COL10A16475.545489.04462-4899B?

    COL10A16489.05489.05462-4899B39.7

    COL10A16489.06510.26?9,23??

    CTGF6510.27531.46?9,23??

    CTGF6531.47531.47531-6239E14

    CTGF6531.48567.92531-6239E?

    OPRM16567.93604.36531-6239E?

    OPRM16604.37604.37531-6239E40.9

    OPRM16604.38607.315531-6239E?

    EST12236607.325610.25531-6239E?

    EST12236610.26610.26531-6239E62.24

    EST12236610.27612.54531-6239E?

    TCTEL16612.55614.81531-6239E?

    TCTEL16614.82614.82531-6239E98.24

    TCTEL16614.83617.485531-6239E?

    VIL26617.495620.14531-6239E?

    VIL26620.15620.15531-6239E69.64

    VIL26620.16620.38531-6239E?

    IGF2R6620.39620.6531-6239E?

    IGF2R6620.61620.61531-6239E82.64

    IGF2R6620.62621.72531-6239E?

    PLG6621.73622.82531-6239E?

    PLG6622.83622.83531-6239E86.57

    EST15487049.92?4,25??

    EST1548749.9349.9350 - ?25C65.94

    EST1548749.9452.81?4,25??

    EST1081752.8255.68?4,25??

    EST1081755.6955.6956-604A91.25

    EST1081755.757.96556-604A?

    D26549757.97560.2356-604A?

    D26549760.2460.2456-604A85.92

    D26549760.25138.485?4,25??

    IGFBP37138.495216.72?4,25??

    IGFBP37216.73216.73217 - ?4A236.45

    IGFBP37216.74321.19?4,25??

    GTF2IP17321.2425.64?4,25??

    GTF2IP17425.65425.65426-43325C0

    GTF2IP17425.66429.44426-43325C?

    POM-ZP37429.45433.22426-43325C?

    POM-ZP37433.23433.23426-43325C30.06

    POM-ZP37433.24440.23?4,25??

    GNAI17440.24447.22?4,25??

    GNAI17447.23447.23447-4744A143.95

    GNAI17447.24448.53447-4744A?

    CD367448.54449.82447-4744A?

    CD367449.83449.83447-4744A140.73

    CD367449.84462.055447-4744A?

    U657457462.065474.27447-4744A?

    U657457474.28474.28447-4744A137.88

    U657457474.29482.295?4,25??

    PON27482.305490.3?4,25??

    PON27490.31490.31490--5064A50.59

    PON27490.32493.35490--5064A?

    COL1A27493.36496.38490--5064A?

    COL1A27496.39496.39490--5064A50.84

    COL1A27496.4501.335490--5064A?

    TAC17501.345506.27490--5064A?

    TAC17506.28506.28490--5064A55.86

    TAC17506.29508.86?4,25??

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    KRT812465.45475.2465-48517C?

    CD36L112475.21484.95465-48517C?

    CD36L112484.96484.96465-48517C141.6

    FLT113086.62?12??

    FLT11386.6386.6387-8812A101.03

    FLT11386.6487.08587-8812A?

    DKFZP434K1511387.09587.5387-8812A?

    DKFZP434K1511387.5487.5487-8812A103.25

    DKFZP434K1511387.55108.065?12??

    FKHR13108.075128.58?12??

    FKHR13128.59128.59129-13012A62.64

    FKHR13128.6129.335129-13012A?

    ELF113129.345130.07129-13012A?

    ELF113130.08130.08129-13012A15

    ELF113130.09179.98?12??

    EST200313179.99229.87?12??

    EST200313229.88229.88230-23112A176.18

    EST200313229.89230.21230-23112A?

    SPRY213230.22230.53230-23112A?

    SPRY213230.54230.54230-23112A203.78

    SPRY213230.55270.165?12??

    COL4A113270.175309.78?12??

    COL4A113309.79309.79310 - ?12C46.2

    COL4A113309.8312.985?12??

    F1013312.995316.17?12??

    F1013316.18316.18316-32112D0

    F1013316.19316.75316-32112D?

    LAMP113316.76317.31316-32112D?

    LAMP113317.32317.32316-32112D2.4

    LAMP113317.33319.045316-32112D?

    RHOK13319.055320.76316-32112D?

    RHOK13320.77320.77316-32112D2.5

    MIG2140121.71?10,21??

    MIG214121.72121.72122-21710A218.22

    MIG214121.73125.38122-21710A?

    EST155014125.39129.03122-21710A?

    EST155014129.04129.04122-21710A236.85

    EST155014129.05136.29122-21710A?

    HIF1A14136.3143.53122-21710A?

    HIF1A14143.54143.54122-21710A228.74

    HIF1A14143.55158.285122-21710A?

    X7377214158.295173.02122-21710A?

    X7377214173.03173.03122-21710A289.23

    X7377214173.04179.47122-21710A?

    EST149114179.48185.9122-21710A?

    EST149114185.91185.91122-21710A308.64

    EST149114185.92189.38122-21710A?

    HE114189.39192.84122-21710A?

    LTBP214189.39192.84122-21710A?

    HE114192.85192.85122-21710A313.64

    LTBP214192.85192.85122-21710A320.04

    HE114192.86196.315122-21710A?

    LTBP214192.86196.315122-21710A?

    FOS14196.325199.77122-21710A?

    FOS14199.78199.78122-21710A313.74

    FOS14199.79208.23122-21710A?

    AF01306814208.24216.67122-21710A?

    AF01306814216.68216.68122-21710A328.37

    AF01306814216.69228.485?10,21??

    EST131714228.495240.28?10,21??

    EST131714240.29240.29240-27621B34.23

    EST131714240.3242.84240-27621B?

    CHGA14242.85245.38240-27621B?

    CHGA14245.39245.39240-27621B29.24

    CHGA14245.4248.16240-27621B?

    PI14248.17250.92240-27621B?

    PI14250.93250.93240-27621B34.87

    PI14250.94263.68240-27621B?

    AKT114263.69276.42240-27621B?

    DLK114263.69276.42240-27621B?

    WARS14263.69276.42240-27621B?

    AKT114276.43276.43240-27621B79.44

    DLK114276.43276.43240-27621B63.5

    WARS14276.43276.43240-27621B55.62

    RASGRP1150111.94?10,21??

    RASGRP115111.95111.95112-14210A128.6

    RASGRP115111.96115.55112-14210A?

    HSPCA15115.56119.14112-14210A?

    HSPCA15119.15119.15112-14210A141.5

    HSPCA15119.16130.395112-14210A?

    EPB4215130.405141.63112-14210A?

    EPB4215141.64141.64112-14210A147.8

    EPB4215141.65141.905112-14210A?

    SNAP2315141.915142.16112-14210A?

    SNAP2315142.17142.17112-14210A146.5

    SNAP2315142.18143.76?10??

    KIAA037715143.77145.34?10??

    KIAA037715145.35145.35145 - ?21B14.772 MARKERS IN NEW MAP BUT ONLY ONE IN OLD MAP

    KIAA037715145.36145.77?10,21??

    B2M15145.78146.18?10,21??

    B2M15146.19146.19146 - ?10A332.18

    B2M15146.2151.39?10,21??

    GALK215151.4156.58?10,21??

    GALK215156.59156.59157-21310A195.65

    GALK215156.6158.185157-21310A?

    EST041815158.195159.77157-21310A?

    EST041815159.78159.78157-21310A198.35

    EST041815159.79162.665157-21310A?

    CYP1915162.675165.54157-21310A?

    CYP1915165.55165.55157-21310A188.65

    CYP1915165.56181.865157-21310A?

    ADAM1015181.875198.17157-21310A?

    ADAM1015198.18198.18157-21310A178.95

    ADAM1015198.19199.37157-21310A?

    CCNB215199.38200.55157-21310A?

    CCNB215200.56200.56157-21310A183.65

    CCNB215200.57205.48157-21310A?

    PPIB15205.49210.39157-21310A?

    PPIB15210.4210.4157-21310A164.73

    PPIB15210.41211.56157-21310A?

    TPM115211.57212.71157-21310A?

    TPM115212.72212.72157-21310A174.28

    TPM115212.73216.52?10,21??

    SLC24A115216.53220.31?10,21??

    SLC24A115220.32220.32220-24510A35

    SLC24A115220.33232.81220-24510A?

    EST103715232.82245.29220-24510A?

    EST103715245.3245.3220-24510A96.3

    EST103715245.31246.275?10,21??

    EST108215246.285247.24?10,21??

    EST108215247.25247.25247-26521A137.77

    EST108215247.26252.305247-26521A?

    ETFA15252.315257.35247-26521A?

    ETFA15257.36257.36247-26521A176.77

    ETFA15257.37259.075247-26521A?

    KIAA063115259.085260.78247-26521A?

    KIAA063115260.79260.79247-26521A147.77

    KIAA063115260.8262.715247-26521A?

    BCL2A115262.725264.63247-26521A?

    BCL2A115264.64264.64247-26521A110.84

    BCL2A115264.65279.885?10,21??

    DDT15279.895295.12?10,21??

    DDT15295.13295.13295 - ?21A0

    DDT15295.14302.09?10,21??

    RLBP115302.1309.04?10,21??

    MFGE815302.1309.04?10,21??

    RLBP115309.05309.05309-33521A63

    MFGE815309.05309.05309-33521A54

    RLBP115309.06322.045309-33521A?

    MFGE815309.06322.045309-33521A?

    IGF1R15322.055335.03309-33521A?

    IGF1R15335.04335.04309-33521A10

    TPS216038.83?18,25??

    TPS21638.8438.8439-19725A0

    TPS21638.8553.8739-19725A?

    EST10331653.8868.8939-19725A?

    EST10331668.968.939-19725A16.6

    EST10331668.9183.9239-19725A?

    NUBP11683.9398.9339-19725A?

    NUBP11698.9498.9439-19725A55.1

    NUBP11698.95145.95539-19725A?

    FUS16145.965192.9639-19725A?

    FUS16192.97192.9739-19725A99.54

    FUS16192.98194.98539-19725A?

    EST236216194.995196.9939-19725A?

    PRKCB116194.995196.9939-19725A?

    EST23621619719739-19725A76.95

    PRKCB11619719739-19725A78.21

    EST236216197.01275.64?18,25??

    PRKCB116197.01275.64?18,25??

    SLC6A216275.65354.27?18,25??

    SLC6A216354.28354.28344-37318A126.19

    SLC6A216354.29363.79344-37318A?

    KATNB116363.8373.29344-37318A?

    KATNB116373.3373.3344-37318A148.19

    KATNB116373.31388.975?18,25??

    LCAT16388.985404.64?18,25??

    LCAT16404.65404.65405 - ?18B161.97

    LCAT16404.66405.065?18,25??2 SEGMENTS 405 - ? AND 405 - 411 HERE - CONFUSING

    ATP6DV16405.075405.47?18,25??

    ATP6DV16405.48405.48405-41118B9.2

    ATP6DV16405.49407.105405-41118B?

    HSD11B216407.115408.72405-41118B?

    HSD11B216408.73408.73405-41118B9.3

    HSD11B216408.74410.015405-41118B?

    CDH316410.025411.29405-41118B?

    CDH316411.3411.3405-41118B13.8

    CDH316411.31422.57?18,25??

    AA90801316422.58433.83?18,25??

    AA90801316433.84433.84434-49018A18.7

    AA90801316433.85437.635434-49018A?

    GLG116437.645441.42434-49018A?

    GLG116441.43441.43434-49018A16

    GLG116441.44462.015434-49018A?

    EST146916462.025482.59434-49018A?

    EST146916482.6482.6434-49018A72.68

    EST146916482.61486.22434-49018A?

    APRT16486.23489.83434-49018A?

    APRT16489.84489.84434-49018A81.58

    PEDF17024.29?19??

    PEDF1724.324.324-5419A153.37

    PEDF1724.3124.4224-5419A?

    PLI1724.4324.5324-5419A?

    PLI1724.5424.5424-5419A150.54

    PLI1724.5532.07524-5419A?

    ATP2A31732.08539.624-5419A?

    ATP2A31739.6139.6124-5419A132.25

    ATP2A31739.6240.8824-5419A?

    ARRB21740.8942.1424-5419A?

    ARRB21742.1542.1524-5419A143.28

    ARRB21742.1642.5224-5419A?

    PAFAH1B11742.5342.8824-5419A?

    PAFAH1B11742.8942.8924-5419A132.16

    PAFAH1B11742.948.2124-5419A?

    ACADVL1748.2253.5224-5419A?

    ACADVL1753.5353.5324-5419A142.14

    ACADVL1753.5453.5824-5419A?

    TP531753.5953.6224-5419A?

    TP531753.6353.6324-5419A121.3

    TP531753.6453.7324-5419A?

    SLC2A41753.7453.8224-5419A?

    SLC2A41753.8353.8324-5419A141.94

    SLC2A41753.8478.265?19??

    EST15461778.275102.69?19??

    EST154617102.7102.7103 - ?19A201.38

    EST154617102.71185.61?19??

    R0228317185.62268.51?19A?

    R0228317268.52268.52269-29319A107.03

    R0228317268.53270.025269-29319A?

    CDK5R117270.035271.52269-29319A?

    CDK5R117271.53271.53269-29319A56.58

    CDK5R117271.54272.385269-29319A?

    NF117272.395273.23269-29319A?

    NF117273.24273.24269-29319A90.55

    NF117273.25275.15269-29319A?

    EVI2B17275.16277.05269-29319A?

    EVI2B17277.06277.06269-29319A77.43

    EVI2B17277.07280.15269-29319A?

    KIAA072717280.16283.23269-29319A?

    KIAA072717283.24283.24269-29319A55.37

    KIAA072717283.25288.255269-29319A?

    EST140917288.265293.26269-29319A?

    EST140917293.27293.27269-29319A44.77

    EST140917293.28301.325?19??

    THRA17301.335309.37?19??

    THRA17309.38309.38309-34019A255.08

    THRA17309.39311.855309-34019A?

    IGFBP417311.865314.32309-34019A?

    IGFBP417314.33314.33309-34019A274.95

    IGFBP417314.34315.38309-34019A?

    CNP17315.39316.42309-34019A?

    CNP17316.43316.43309-34019A285.15

    CNP17316.44324.54309-34019A?

    PSA17324.55332.64309-34019A?

    PSA17332.65332.65309-34019A269.45

    PSA17332.66336.195309-34019A?

    NDP5217336.205339.73309-34019A?

    NDP5217339.74339.74309-34019A235.55

    NDP5217339.75339.77309-34019A?

    U2008517339.78339.79309-34019A?

    U2008517339.8339.8309-34019A253.07

    U2008517339.81352.405?19??

    MMD17352.415365?19??

    MMD17365.01365.01365-37619A0

    MMD17365.02370.66365-37619A?

    CLTCL217370.67376.3365-37619A?

    CLTCL217376.31376.31365-37619A27.44

    CLTCL217376.32390.105?19??

    PSMC517390.115403.89?19??

    PSMC517403.9403.9404-40519A303.29

    PSMC517403.91404.66404-40519A?

    PECAM117404.67405.41404-40519A?

    PECAM117405.42405.42404-40519A357.1

    PECAM117405.43440.46?19??

    ICT117440.47475.49?19??

    ICT117475.5475.5435-53719A526.08

    ICT117475.51476.905435-53719A?

    GRB217476.915478.3435-53719A?

    GRB217478.31478.31435-53719A531.63

    GRB217478.32480.72435-53719A?

    H3F3B17480.73483.12435-53719A?

    H3F3B17483.13483.13435-53719A538.46

    H3F3B17483.14492.07435-53719A?

    TK117492.08501435-53719A?

    TK117501.01501.01435-53719A492.94

    TK117501.02514.16435-53719A?

    PDE6G17514.17527.3435-53719A?

    PDE6G17527.31527.31435-53719A388.73

    PDE6G17527.32529.135435-53719A?

    P4HB17529.145530.95435-53719A?

    P4HB17530.96530.96435-53719A403.79

    P4HB17530.97533.8435-53719A?

    TBCD17533.81536.63435-53719A?

    TBCD17536.64536.64435-53719A366.42

    ADCYAP118014.81?24??

    ADCYAP11814.8214.8215 - ?24A116.26

    ADCYAP11814.8314.975?24??2 MARKERS BUT NOT EXACTLY SAME DISTANCE AT DECIMAL

    TYMS1814.98515.12?24??ACCURACY OF 2 PLACES

    TYMS1815.1315.1315 - ?24A116.59

    TYMS1815.1438.685?24??

    EST06491838.69562.23?24??

    EST06491862.2462.2462-8124B15.08

    EST06491862.2571.5762-8124B?

    EST00271871.5880.8962-8124B?

    EST00271880.980.962-8124B1.5

    EST00271880.91149.61?24??

    AQP418149.62218.31?24??

    AQP418218.32218.32218 - ?24A124.73

    AQP418218.33288.52?24??

    ME218288.53358.71?24??

    ME218358.72358.72359-41524B22.66

    ME218358.73369.87359-41524B?

    FECH18369.88381.01359-41524B?

    FECH18381.02381.02359-41524B23.2

    FECH18381.03391.935359-41524B?

    LMAN118391.945402.84359-41524B?

    LMAN118402.85402.85359-41524B44.68

    LMAN118402.86403.91359-41524B?

    GRP18403.92404.96359-41524B?

    GRP18404.97404.97359-41524B41.97

    GRP18404.98409.74359-41524B?

    BCL218409.75414.5359-41524B?

    BCL218414.51414.51359-41524B44.68

    BCL218414.52444.515?24??

    EST236818444.525474.51?24??

    EST236818474.52474.52475 - ?24A0

    DKFZP566B13319022.99?7,18??

    DKFZP566B13319232323-1027A114.91

    DKFZP566B1331923.0124.41523-1027A?

    EST19251924.42525.8223-1027A?

    EST19251925.8325.8323-1027A93.44

    EST19251925.8430.2623-1027A?

    EST10671930.2734.6823-1027A?

    EST10671934.6934.6923-1027A105.81

    EST10671934.751.30523-1027A?

    ICAM31951.31567.9123-1027A?

    ICAM31967.9267.9223-1027A87

    ICAM31967.9369.5523-1027A?

    ETR1011969.5671.1723-1027A?

    ETR1011971.1871.1823-1027A70.64

    ETR1011971.1972.23523-1027A?

    DNASE21972.24573.2823-1027A?

    DNASE21973.2973.2923-1027A63.84

    DNASE21973.375.8523-1027A?

    EST13941975.8678.423-1027A?

    EST13941978.4178.4123-1027A35.92

    EST13941978.4287.7923-1027A?

    INSL31987.897.1623-1027A?

    INSL31997.1797.1723-1027A33.32

    INSL31997.1899.5323-1027A?

    COMP1999.54101.8823-1027A?

    COMP19101.89101.8923-1027A21.98

    COMP19101.9158.965?7,18??

    CAPN419158.975216.03?7,18??

    CAPN419216.04216.04216-26918B35.06

    CAPN419216.05216.09216-26918B?

    EST104219216.1216.13216-26918B?

    EST104219216.14216.14216-26918B32.66

    EST104219216.15225.6216-26918B?

    ZFP3619225.61235.05216-26918B?

    ZFP3619235.06235.06216-26918B69.66

    ZFP3619235.07236.055216-26918B?

    BLVRB19236.065237.04216-26918B?

    BLVRB19237.05237.05216-26918B76.86

    BLVRB19237.06239.91216-26918B?

    PAFAH1B319239.92242.76216-26918B?

    PAFAH1B319242.77242.77216-26918B85.48

    PAFAH1B319242.78243.405216-26918B?

    PLAUR19243.415244.03216-26918B?

    PLAUR19244.04244.04216-26918B105.63

    PLAUR19244.05244.2216-26918B?

    CD79A19244.21244.35216-26918B?

    CD79A19244.36244.36216-26918B78.48

    CD79A19244.37244.515216-26918B?

    APOE19244.525244.66216-26918B?

    APOE19244.67244.67216-26918B106.95

    APOE19244.68256.735216-26918B?

    BAX19256.745268.79216-26918B?

    BAX19268.8268.8216-26918B125.98

    IDH3B20013.42?13??

    IDH3B2013.4313.4313-3213A168.07

    IDH3B2013.4416.80513-3213A?

    EST14392016.81520.1713-3213A?

    EST14392020.1820.1813-3213A175.64

    EST14392020.1925.9313-3213A?

    CHGB2025.9431.6713-3213A?

    CHGB2031.6831.6813-3213A151.7

    CHGB2031.6971.855?13??

    THBD2071.865112.02?13??

    THBD20112.03112.03112-12313A121.12

    THBD20112.04117.755112-12313A?

    CST320117.765123.47112-12313A?

    CST320123.48123.48112-12313A118.41

    CST320123.49157.47?13??

    EB120157.48191.45?13??

    EB120191.46191.46191-30113A228.72

    EB120191.47195.815191-30113A?

    EPCR20195.825200.16191-30113A?

    EPCR20200.17200.17191-30113A236.62

    EPCR20200.18204.545191-30113A?

    RPN220204.555208.91191-30113A?

    RPN220208.92208.92191-30113A255.62

    RPN220208.93210.9191-30113A?

    BPI20210.91212.87191-30113A?

    BPI20212.88212.88191-30113A269.2

    BPI20212.89212.97191-30113A?

    AF03734920212.98213.05191-30113A?

    AF03734920213.06213.06191-30113A266.05

    AF03734920213.07222.455191-30113A?

    TGM220222.465231.84191-30113A?

    TGM220231.85231.85191-30113A264.18

    TGM220231.86245.96191-30113A?

    EST042420245.97260.06191-30113A?

    EST042420260.07260.07191-30113A306.49

    EST042420260.08276.77191-30113A?

    PTGIS20276.78293.46191-30113A?

    PTGIS20293.47293.47191-30113A341.09

    PTGIS20293.48297.34191-30113A?

    B4GALT520297.35301.2191-30113A?

    B4GALT520301.21301.21191-30113A346.32

    B4GALT520301.22318.325?13??

    EST065120318.335335.43?13??

    EST065120335.44335.44335-33713A209

    EST065120335.45336.165335-33713A?

    GNAS120336.175336.88335-33713A?

    GNAS120336.89336.89335-33713A184.85

    EST2187210131.18?1??

    EST218721131.19131.1954-1501A27.31

    EST218721131.2140.34554-1501A?

    EST141321140.355149.4954-1501A?

    EST141321149.5149.554-1501A19.17

    EST141321149.51188.345?1??

    MX121188.355227.18?1??

    MX121227.19227.19227-2461B201.18

    MX121227.2236.35227-2461B?

    ITGB221236.36245.5227-2461B?

    ITGB221245.51245.51227-2461B209.03

    PIK4CA22027.52?5,17??

    PIK4CA2227.5327.5328-8717C250.93

    PIK4CA2227.5447.37528-8717C?

    ADRBK22247.38567.2128-8717C?

    ADRBK22267.2267.2228-8717C191.17

    ADRBK22267.2375.8328-8717C?

    MTMR32275.8484.4328-8717C?

    MTMR32284.4484.4428-8717C231.29

    MTMR32284.4585.95528-8717C?

    LIF2285.96587.4628-8717C?

    LIF2287.4787.4728-8717C222.16

    LIF2287.4890.66?5,17??

    TIMP32290.6793.84?5,17??

    TIMP32293.8593.8594-1155A247.2

    TIMP32293.86104.44594-1155A?

    TST22104.455115.0394-1155A?

    TST22115.04115.0494-1155A272.05

    TST22115.05120.855?5,17??

    ACO222120.865126.66?5,17??

    ACO222126.67126.67127 - ?5A368.27

    SATX0101.23?X??

    SATX101.24101.24101-283XB263.55

    SATX101.25107.01101-283XB?

    CYBBX107.02112.77101-283XB?

    CYBBX112.78112.78101-283XB255.93

    CYBBX112.79121.66101-283XB?

    MAOAX121.67130.53101-283XB?

    MAOAX130.54130.54101-283XB229.65

    MAOAX130.55132.94101-283XB?

    TIMP1X132.95135.33101-283XB?

    TIMP1X135.34135.34101-283XB195.4

    TIMP1X135.35138.45101-283XB?

    SYN1X138.46141.55101-283XB?

    SYN1X141.56141.56101-283XB195.46

    SYN1X141.57143.245101-283XB?

    SYPX143.255144.92101-283XB?

    SYPX144.93144.93101-283XB207.85

    SYPX144.94154.11101-283XB?

    HADH2X154.12163.28101-283XB?

    HADH2X163.29163.29101-283XB220.15

    HADH2X163.3201.255101-283XB?

    CITED1X201.265239.21101-283XB?

    CITED1X239.22239.22101-283XB183.7

    CITED1X239.23261.315101-283XB?

    FACL4X261.325283.4101-283XB?

    FACL4X283.41283.41101-283XB142.9

    FACL4X283.42300.51?X??

    HPRT1X300.52317.6?X??

    HPRT1X317.61317.61318-320XA25.8

    HPRT1X317.62318.805318-320XA?

    TNFSF5X318.815319.99318-320XA?

    TNFSF5X320320318-320XA35.4

    TNFSF5X320.01335.255?X??POSSIBLE DISCREPANCY BETWEEN 2 MAPS

    SLC6A8X335.265350.5?X??

    SLC6A8X350.51350.51351 - ?XB86

    SLC6A8X350.52350.725?XB?

    GDI1X350.735350.93?XB?

    GDI1X350.94350.94351 - ?XB43

    &Lin madison-highlighted&CFINBIN_ref&RPage &P

    FINBIN_ref

    SymbolHuman ChrcR3000 - initialcR3001- finalGB4BTALinkagecR5000

    GNB11015.88?2,3,16,28??

    ISG151015.88?2,3,16,28??

    GNB1115.8915.8916-5716B173.42

    ISG15115.8915.8916-5716B171.52

    GNB1115.920.63516-5716B?

    ISG15115.920.63516-5716B?

    TNFRSF12120.64525.3716-5716B?

    TNFRSF12125.3825.3816-5716B181.79

    TNFRSF12125.3938.3516-5716B?

    PLOD138.3651.3116-5716B?

    SDR1138.3651.3116-5716B?

    PLOD151.3251.3216-5716B161.12

    SDR1151.3251.3216-5716B193.34

    PLOD151.335416-5716B?

    SDR1151.335416-5716B?

    ELA1154.0156.6716-5716B?

    ELA1156.6856.6816-5716B175.59

    ELA1156.6960.065?2,3,16,28??

    MFAP2160.07563.44?2,3,16,28??

    MFAP2163.4563.4563-1012C265.56

    MFAP2163.4670.5263-1012C?

    CDC42170.5377.5863-1012C?

    CDC42177.5977.5963-1012C242.2

    CDC42177.679.45563-1012C?

    EST1205179.46581.3163-1012C?

    EST1205181.3281.3263-1012C229.3

    EST1205181.3382.47563-1012C?

    EST0622182.48583.6263-1012C?

    EST0622183.6383.6363-1012C217.65

    EST0622183.6484.43563-1012C?

    EST0013184.44585.2363-1012C?

    EST0013185.2485.2463-1012C195.07

    EST0013185.2586.1463-1012C?

    EST1436186.1587.0363-1012C?

    EST1436187.0487.0463-1012C190.55

    EST1436187.0589.963-1012C?

    PPP1R8189.9192.7563-1012C?

    PPP1R8192.7692.7663-1012C187.38

    PPP1R8192.7793.73563-1012C?

    PTP4A2193.74594.763-1012C?

    PTP4A2194.7194.7163-1012C180.05

    PTP4A2194.7295.7863-1012C?

    LAPTM5195.7996.8463-1012C?

    LAPTM5196.8596.8563-1012C183.18

    LAPTM5196.8698.92563-1012C?

    LCK198.935100.9963-1012C?

    LCK110110163-1012C175.28

    LCK1101.01109.86?2,3,16,28??

    EST10311109.87118.71?2,3,16,28??

    EST10311118.72118.72119-5893A252

    EST10311118.73118.875119-5893A?

    ACF71118.885119.02119-5893A?

    ACF71119.03119.03119-5893A287

    ACF71119.04124.625119-5893A?

    TIE1124.635130.21119-5893A?

    TIE1130.22130.22119-5893A236

    TIE1130.23147.86119-5893A?

    JUN1147.87165.49119-5893A?

    JUN1165.5165.5119-5893A199

    JUN1165.51168.64119-5893A?

    PGM11168.65171.77119-5893A?

    PGM11171.78171.78119-5893A190

    PGM11171.79179.01119-5893A?

    RPE651179.02186.23119-5893A?

    RPE651186.24186.24119-5893A198

    RPE651186.25212.255119-5893A?

    PRKACB1212.265238.26119-5893A?

    PRKACB1238.27238.27119-5893A169

    PRKACB1238.28242.895119-5893A?

    ACTR21242.905247.51119-5893A?

    ACTR21247.52247.52119-5893A157

    ACTR21247.53247.57119-5893A?

    GBP11247.58247.61119-5893A?

    GBP11247.62247.62119-5893A144

    GBP11247.63255.54119-5893A?

    EST18061255.55263.45119-5893A?

    EST18061263.46263.46119-5893A143

    EST18061263.47265.065119-5893A?

    F31265.075266.66119-5893A?

    F31266.67266.67119-5893A167

    F31266.68279.735119-5893A?

    DBT1279.745292.79119-5893A?

    DBT1292.8292.8119-5893A168

    DBT1292.81293.28119-5893A?

    VCAM11293.29293.75119-5893A?

    VCAM11293.76293.76119-5893A136

    VCAM11293.77294.215119-5893A?

    EDG11294.225294.66119-5893A?

    EDG11294.67294.67119-5893A133

    EDG11294.68299.81119-5893A?

    AMY2A1299.82304.94119-5893A?

    AMY2A1304.95304.95119-5893A126

    AMY2A1304.96322.04119-5893A?

    CSF11322.05339.12119-5893A?

    CSF11339.13339.13119-5893A110

    CSF11339.14347.86119-5893A?

    OVGP11347.87356.58119-5893A?

    OVGP11356.59356.59119-5893A115

    OVGP11356.6360.5119-5893A?

    CAPZA11360.51364.4119-5893A?

    CAPZA11364.41364.41119-5893A108

    CAPZA11364.42367.64119-5893A?

    NRAS1367.65370.86119-5893A?

    NRAS1370.87370.87119-5893A115

    NRAS1370.88372.275119-5893A?

    TSHB1372.285373.67119-5893A?

    TSHB1373.68373.68119-5893A105

    TSHB1373.69380.41119-5893A?

    NGFB1380.42387.13119-5893A?

    NGFB1387.14387.14119-5893A114

    NGFB1387.15462.71119-5893A?

    MUC11462.72538.27119-5893A?

    MUC11538.28538.28119-5893A63

    MUC11538.29540.02119-5893A?

    S100A71540.03541.75119-5893A?

    S100A71541.76541.76119-5893A67

    S100A71541.77546.055119-5893A?

    PSMD41546.065550.34119-5893A?

    PSMD41550.35550.35119-5893A70

    PSMD41550.36551.205119-5893A?

    KIAA07361551.215552.05119-5893A?

    KIAA07361552.06552.06119-5893A90

    KIAA07361552.07552.42119-5893A?

    S100A41552.43552.77119-5893A?

    S100A41552.78552.78119-5893A67

    S100A41552.79553.245119-5893A?

    EST05391553.255553.7119-5893A?

    EST05391553.71553.71119-5893A71

    EST05391553.72553.8119-5893A?

    RPS191553.81553.88119-5893A?

    RPS191553.89553.89119-5893A72

    RPS191553.9571.555119-5893A?

    FCGR2B1571.565589.21119-5893A?

    FCGR2B1589.22589.22119-5893A11

    FCGR2B1589.23600.16?2,3,16,28??

    SELE1600.17611.09?2,3,16,28??

    SELL1600.17611.09?2,3,16,28??

    SELE1611.1611.1611.1 - ?16B127.76

    SELL1611.1611.1611.1 - ?16B137.86

    SELE1611.11617.37?2,3,16,28??

    SELL1611.11617.37?2,3,16,28??

    KIAA01061617.38623.63?2,3,16,28??

    KIAA01061623.64623.64624-64216B318.09

    KIAA01061623.65624.92624-64216B?

    EST10131624.93626.19624-64216B?

    EST10131626.2626.2624-64216B264.84

    EST10131626.21630.345624-64216B?

    RGS161630.355634.48624-64216B?

    RGS161634.49634.49624-64216B248.34

    RGS161634.5635.1624-64216B?

    DDX91635.11635.7624-64216B?

    DDX91635.71635.71624-64216B256.94

    DDX91635.72637.54624-64216B?

    PTGS21637.55639.36624-64216B?

    PTGS21639.37639.37624-64216B208.39

    PTGS21639.38640.58624-64216B?

    NCF21640.59641.78624-64216B?

    NCF21641.79641.79624-64216B248.24

    NCF21641.8656.355?2,3,16,28??

    FMOD1656.365670.91?2,3,16,28??

    FMOD1670.92670.92671-68416A40.8

    FMOD1670.93671.16671-68416A?

    MYOG1671.17671.39671-68416A?

    MYOG1671.4671.4671-68416A0

    MYOG1671.41672.69671-68416A?

    ATP2B41672.7673.97671-68416A?

    ATP2B41673.98673.98671-68416A11.8

    ATP2B41673.99678.925671-68416A?

    EST08041678.935683.86671-68416A?

    EST08041683.87683.87671-68416A52.72

    EST08041683.88684.125671-68416A?

    C4BPB1684.135684.37671-68416A?

    C4BPB1684.38684.38671-68416A69.16

    C4BPB1684.39690.58?2,3,16,28??Gonna ask Harris about this, I'm not totally sure this is the way to do it, probably it is, but I want to be sure!!

    EST03391690.59696.77?2,3,16,29??

    EST03391696.78696.78696.78-?16B213.98

    EST03391696.79704.065?2,3,16,29??

    EST18751704.075711.34?2,3,16,29??

    EST18751711.35711.35711-71916B90.7

    EST18751711.36715.02711-71916B?

    EPHX11715.03718.68711-71916B?

    EPHX11718.69718.69711-71916B77.3

    EPHX11718.7728.19?2,3,16,29??

    GUK11719.555720.39?16,28??Leave this whole segment out!!!! Prediction doesn't make sense, 16 and 28 ?????? The rule was: if it's not in an existing segment it could be anywhere where we have predictions for: 2,3,16 & 28 but in this case..leave it out, it's a double starred marker!

    GUK11720.4720.4711-7207A0Rule: Leave ** markers out!!!!

    GUK11720.41729.045?16,28??

    KIAA00161728.19737.68?2,3,16,29??

    KIAA00161737.69737.69738-74628A0

    KIAA00161737.7739.17738-74628A?

    CHS11739.18740.64738-74628A?

    CHS11740.65740.65738-74628A31.1

    CHS11740.66743.415738-74628??

    RGS71743.425746.17738-74628??

    RGS71746.18746.18746.18-?16B123.36DISCREPANCY BETWEEN OLD AND NEW MAPS - CHECK

    RGS71746.19746.235738-74628??

    CHRM31746.245746.28738-74628??

    CHRM31746.29746.29738-74628A50.4

    ODC12044.25?2,11??

    ODC1244.2644.2644-1002,11A264.41How can this happen??? You have a map prediction!!! How can you not know the chromosome prediction????? It should only be 11 since it is mapped on BTA 11 How can this happen?????

    ODC1244.2744.52544-10011A?

    X95906244.53544.7844-10011A?

    X95906244.7944.7944-10011A273.1

    X95906244.845.54544-10011A?

    RRM2245.55546.2944-10011A?

    RRM2246.346.344-10011A268.7

    RRM2246.3158.2144-10011A?

    KIAA0235258.2270.1144-10011A?

    KIAA0235270.1270.1244-10011A232.34

    KIAA0235270.1380.0344-10011A?

    EST1262280.0489.9344-10011A?

    EST1448280.0489.9344-10011A?

    HADHB280.0489.9344-10011A?

    EST1262289.9489.9444-10011A201.99

    EST1448289.9489.9444-10011A193.76

    HADHB289.9489.9444-10011A190.19

    EST1262289.9593.9444-10011A?

    EST1448289.9593.9444-10011A?

    HADHB289.9593.9444-10011A?

    KIAA0007293.9597.9344-10011A?

    KIAA0007297.9497.9444-10011A131.49

    KIAA0007297.9598.6444-10011A?

    HADHA298.6599.3344-10011A?

    HADHA299.3499.3444-10011A193

    HADHA299.3599.49544-10011A?

    PPP1CB299.50599.6444-10011A?

    PPP1CB299.6599.6544-10011A187

    PPP1CB299.66118.09?2,11??

    PPM1B2118.1136.52?2,11??

    PPM1B2136.53136.53137-15911A41.02

    PPM1B2136.54139.515137-15911A?

    MSH22139.525142.49137-15911A?

    MSH22142.5142.5137-15911A54.55

    MSH22142.51142.6137-15911A?

    EST05552142.61142.69137-15911A?

    EST05552142.7142.7137-15911A45.69

    EST05552142.71145.805137-15911A?

    LHCGR2145.815148.9137-15911A?

    LHCGR2148.91148.91137-15911A55.77

    LHCGR2148.92149.835137-15911A?

    NRXN12149.845150.75137-15911A?

    NRXN12150.76150.76137-15911A55.77

    NRXN12150.77154.72137-15911A?

    FSHR2154.73158.67137-15911A?

    FSHR2158.68158.68137-15911A55.82

    FSHR2158.69178.445?2,11A?

    UGP22178.455198.2?2,11A?

    UGP22198.21198.21198.21 - ?11A128.65

    UGP22198.22204.605?2,11??

    XDH2204.615210.99?2,11??

    XDH2211211211 - ?11????It's on the new map, but has no map prediction, that's strange, gonna find out what happened there!!

    XDH2211.01252.615?2,11??

    EST05792252.625294.22?2,11??

    EST05792294.23294.23294-41111A79.92

    EST05792294.24294.84294-41111A?

    GGCX2294.85295.44294-41111A?

    GGCX2295.45295.45294-41111A79.92

    GGCX2295.46300.035294-41111A?

    EST18172300.045304.61294-41111A?

    EST18172304.62304.62294-41111A79.71

    EST18172304.63357.195294-41111A?

    IL1A2357.205409.76294-41111A?

    IL1A2409.77409.77294-41111A80.91

    IL1A2409.78410.495294-41111A?

    IL1B2410.505411.21294-41111A?

    IL1RN2410.505411.21294-41111A?

    IL1B2411.22411.22294-41111A81.34

    IL1RN2411.22411.22294-41111A83.98

    IL1B2411.23413.715?2,11??

    IL1RN2411.23413.715?2,11??

    ACTR32413.725416.2?2,11??

    ACTR32416.21416.21416.21-?2C6.48Forgot to put on Old map, should have been there, my mistake!

    ACTR32416.22492.295?2,11??

    KIAA01372492.305568.37?2,11??

    KIAA01372568.38568.38568-5872B40.47

    KIAA01372568.39577.795568-5872B?

    FRZB2577.805587.2568-5872B?

    FRZB2587.21587.21568-5872B0

    FRZB2587.22601.975?2,11??

    STAT12601.985616.73?2,11??

    STAT12616.74616.74617-6332C0

    STAT12616.75621.13617-6332C?

    EST12392621.14625.51617-6332C?

    EST12392625.52625.52617-6332C38.69

    EST12392625.53629.3617-6332C?

    CD282629.31633.07617-6332C?

    CD282633.08633.08617-6332C48.31

    CD282633.09654.055?2,11??

    ATIC2654.065675.02?2,11??

    ATIC2675.03675.03675-6832C156.04

    ATIC2675.04677.22675-6832C?

    IL8RB2677.23679.4675-6832C?

    IL8RB2679.41679.41675-6832C102.24

    IL8RB2679.42680.07675-6832C?

    ARPC22680.08680.72675-6832C?

    ARPC22680.73680.73675-6832C102.74

    ARPC22680.74681.705675-6832C?

    DES2681.715682.67675-6832C?

    DES2682.68682.68675-6832C96.75

    DES2682.69705.12?2,11??

    SAG2705.13727.55?2,11??

    SAG2727.56727.56?2,11??This marker is there but is a double starred marker: Rule ==> leave out!!!

    RPS253038.44?1,22??

    RPS25338.4538.4538-4422A81.7

    RPS25338.4641.21538-4422A?

    OXTR341.22543.9738-4422A?

    OXTR343.9843.9838-4422A89

    OXTR343.9947.63?1,22??

    PPARG347.6451.27?1,22??

    PPARG351.2851.2851-5722B93.18

    PPARG351.2954.34551-5722B?

    HRH1354.35557.451-5722B?

    HRH1357.4157.4151-5722B82.61

    HRH1357.4297.41?1,22??

    GC20397.42137.4?1,22??

    GC203137.41137.41137 - ?22A45.5

    GC203137.42146.115?1,22??

    MAP43146.125154.81?1,22??

    MAP43154.82154.82152-19022B63.33

    MAP43154.83155.775152-19022B?

    EST17833155.785156.72152-19022B?

    EST17833156.73156.73152-19022B63.75

    EST17833156.74157.375152-19022B?

    UQCRC13157.385158.01152-19022B?

    UQCRC13158.02158.02152-19022B67.74

    UQCRC13158.03158.045152-19022B?

    AMT3158.055158.06152-19022B?

    AMT3158.07158.07152-19022B57.87

    AMT3158.08159.25152-19022B?

    GNAT13159.26160.42152-19022B?

    GNAT13160.43160.43152-19022B54.1

    GNAT13160.44175.125152-19022B?

    EST12003175.135189.81152-19022B?

    EST12003189.82189.82152-19022B25.3

    EST12003189.83199.455?1,22??

    UBE1C3199.465209.08?1,22??

    UBE1C3209.09209.09209 - ?22A127.2

    UBE1C3209.1236.235?1,22??

    POU1F13236.245263.37?1,22??

    POU1F13263.38263.38263-3631A98.02

    POU1F13263.39313.19263-3631A?

    ALCAM3313.2362.99263-3631A?

    ALCAM3363363263-3631A102.45

    ALCAM3363.01382.755?1,22??

    TACTILE3382.765402.5?1,22??

    TACTILE3402.51402.51403-4401B98.2

    TACTILE3402.52406.415403-4401B?

    ATP6A13406.425410.31403-4401B?

    ATP6A13410.32410.32403-4401B0

    ATP6A13410.33421.14403-4401B?

    PDIR3421.15431.95403-4401B?

    PDIR3431.96431.96403-4401B48.82

    PDIR3431.97435.805403-4401B?

    UMPS3435.815439.64403-4401B?

    UMPS3439.65439.65403-4401B62.19

    UMPS3439.66449.605?1,22??

    RAB73449.615459.55?1,22??

    RAB73459.56459.56?22B60.92DISCREPANCY BETWEEN OLD AND NEW MAPS - CHECK

    RAB73459.57459.12?22B?CHECK THE TWO MAPS AROUND THIS POSITION

    X700193459.13458.67?22B?THERE ARE 3 MARKERS AT 458, 459,460 IN THE NEW WHICH IS NOT FULLY

    X700193458.68458.68?22B0ACCOUNTED FOR IN THE OLD MAP

    X700193458.69459.47?22B?

    RHO3459.48460.25?22B?

    RHO3460.26460.26?22B89.87

    RHO3460.27466.98?1,22??

    TF3466.99473.69?1,22??

    TF3473.7473.7474-7001B202.14

    TF3473.71480.93474-7001B?

    COPB23480.94488.15474-7001B?

    COPB23488.16488.16474-7001B19.82

    COPB23488.17493.135474-7001B?

    EST06173493.145498.1474-7001B?

    EST06173498.11498.11474-7001B170.78

    EST06173498.12501.325474-7001B?

    EST12933501.335504.53474-7001B?

    EST12933504.54504.54474-7001B187.78

    EST12933504.55510.425474-7001B?

    TRPC13510.435516.3474-7001B?

    TRPC13516.31516.31474-7001B190.58

    TRPC13516.32516.36474-7001B?

    KIAA03323516.37516.4474-7001B?

    KIAA03323516.41516.41474-7001B187.78

    KIAA03323516.42539.025474-7001B?

    AGTR13529.41542.38474-7001B?

    AGTR13542.39542.39474-7002B29.3DISCARD

    AGTR13542.4552.015474-7001B?

    P2RY13539.035561.63474-7001B?

    P2RY13561.64561.64474-7001B157.78

    P2RY13561.65575.065474-7001B?

    IL12A3575.075588.48474-7001B?

    IL12A3588.49588.49474-7001B147.18

    IL12A3588.5643.79474-7001B?

    AHSG3643.8699.08474-7001B?

    AHSG3699.09699.09474-7001B105.2

    AHSG3699.1699.79474-7001B?

    KNG3699.8700.48474-7001B?

    KNG3700.49700.49474-7001B92.14

    WDR14061.22?6,17??

    WDR1461.2361.2361 - ?6A350.46

    WDR1461.24125.945?6,17??

    UGDH4125.955190.65?6,17??

    UGDH4190.66190.66191-4256A161.4

    UGDH4190.67253.46191-4256A?

    KDR4253.47316.25191-4256A?

    KDR4316.26316.26191-4256A230.4

    KDR4316.27325.3191-4256A?

    EST11614325.31334.33191-4256A?

    EST11614334.34334.34191-4256A251.2

    EST11614334.35367.715191-4256A?

    GNRHR4367.725401.08191-4256A?

    GNRHR4401.09401.09191-4256A261.02

    GNRHR4401.1410.755191-4256A?

    STE4410.765420.41191-4256A?

    STE4420.42420.42191-4256A278.02

    STE4420.43422.485191-4256A?

    GRO24422.495424.54191-4256A?

    GRO24424.55424.55191-4256A282.33

    GRO24424.56431.07?6,17??

    SPP14431.08437.58?6,17??

    SPP14437.59437.59438 - ?6A117.1

    SPP14437.6446.73?6,17??

    PTPN134446.74455.86?6,17??

    PTPN134455.87455.87456 - ?6A345.19

    PTPN134455.88456.445?6,17??

    IBSP4456.455457.01?6,17??

    IBSP4457.02457.02457-5086A117.1

    IBSP4457.03482.065457-5086A?

    PAPSS14482.075507.1457-5086A?

    PAPSS14507.11507.11457-5086A94.4

    PAPSS14507.12507.58457-5086A?

    EST14104507.59508.04457-5086A?

    EST14104508.05508.05457-5086A96.4

    EST14104508.06534.36?6,17??

    FGF24534.37560.66?6,17??

    FGF24560.67560.67561-57417B12.6

    FGF24560.68567.515561-57417B?

    PMBP4567.525574.35561-57417B?

    PMBP4574.36574.36561-57417B49.6

    PMBP4574.37594.565?6,17??

    EST10504594.575614.76?6,17??

    EST10504614.77614.77615-66217A94.42

    EST10504614.78622.5615-66217A?

    EDNRA4622.51630.22615-66217A?

    EDNRA4630.23630.23615-66217A56.72

    EDNRA4630.24634.63615-66217A?

    EST01474634.64639.02615-66217A?

    EST01474639.03639.03615-66217A6.6

    EST01474639.04641.865615-66217A?

    NPY2R4641.875644.69615-66217A?

    NPY2R4644.7644.7615-66217A10.49

    NPY2R4644.71644.8615-66217A?

    PPID4644.81644.89615-66217C?

    PPID4644.9644.9615-66217C19.3

    PPID4644.91653.52615-66217C?

    SC4MOL4653.53662.13615-66217A?

    SC4MOL4662.14662.14615-66217A0

    CDH650116.08?7,20??

    CDH65116.09116.09116-35620A206.87

    CDH65116.1120.225116-35620A?

    SLC1A35120.235124.35116-35620A?

    SLC1A35124.36124.36116-35620A145.87

    SLC1A35124.37198.435116-35620A?

    EST00085198.445272.5116-35620A?

    EST00085272.51272.51116-35620A94.98

    EST00085272.52280116-35620A?

    ITGA25280.01287.48116-35620A?

    ITGA25287.49287.49116-35620A89.12

    ITGA25287.5293.93116-35620A?

    EST14665293.94300.36116-35620A?

    EST14665300.37300.37116-35620A25.17

    EST14665300.38318.835116-35620A?

    EST10245318.845337.29116-35620A?

    EST10245337.3337.3116-35620A20.77

    EST10245337.31342.13116-35620A?

    SMN15342.14346.95116-35620A?

    SMN15346.96346.96116-35620A23.36

    SMN15346.97351.355116-35620A?

    BTF35351.365355.74116-35620A?

    BTF35355.75355.75116-35620A43.07

    BTF35355.76376.61?7,20??

    RASA15376.62397.46?7,20??

    RASA15397.47397.47397-4357C12

    RASA15397.48416.445397-4357C?

    PAM5416.455435.41397-4357C?

    PAM5435.42435.42397-4357C99.6

    PAM5435.43469.44?7,20??

    PPP2CA5469.45503.45?7,20??

    PPP2CA5503.46503.46503 - ?7B26.3

    PPP2CA5503.47506.455?7,20??

    IL35506.465509.44?7,20??

    IL35509.45509.45509 - ?7A105.91

    IL35509.46515.03?7,20??

    HNRPA05515.04520.6?7,20??

    HNRPA05520.61520.61521-6097B48.3

    HNRPA05520.62524.335521-6097B?

    ARA545524.345528.05521-6097B?

    ARA545528.06528.06521-6097B64.3

    ARA545528.07528.165521-6097B?

    GNPI5528.175528.26521-6097B?

    GNPI5528.27528.27521-6097B66.8

    GNPI5528.28528.785521-6097B?

    CD145528.795529.29521-6097B?

    CD145529.3529.3521-6097B72

    CD145529.31540.725521-6097B?

    EST10965540.735552.14521-6097B?

    EST10965552.15552.15521-6097B105

    EST10965552.16566.33521-6097B?

    GPX35566.34580.5521-6097B?

    GPX35580.51580.51521-6097B144

    GPX35580.52581.825521-6097B?

    CD745581.835583.13521-6097B?

    CD745583.14583.14521-6097B180

    CD745583.15583.97521-6097B?

    SPARC5583.98584.79521-6097B?

    SPARC5584.8584.8521-6097B153

    SPARC5584.81588.18521-6097B?

    IL12B5588.19591.55521-6097B?

    IL12B5591.56591.56521-6097B182

    IL12B5591.57600.22521-6097B?

    GABRA15600.23608.87521-6097B?

    GABRA15608.88608.88521-6097B186

    GABRA15608.89620.25?7,20??

    DOCK25620.26631.61?7,20??

    LCP25620.26631.61?7,20??

    DOCK25631.62631.62632 - ?20A14.98

    LCP25631.62631.62632 - ?20A10.65

    DOCK25631.63634.28?7,20??

    LCP25631.63634.28?7,20??

    SLC34A15634.29636.93?7,20??

    SLC34A15636.94636.94637-6467A173.91

    SLC34A15636.95636.99637-6467A?

    F125637637.03637-6467A?

    F125637.04637.04637-6467A182.29

    F125637.05641.495637-6467A?

    HNRPAB5641.505645.94637-6467A?

    HNRPAB5645.95645.95637-6467A181.91

    EST03956039.17?9,23??

    EST0395639.1839.1839-11823A352.06

    EST0395639.1940.6439-11823A?

    F13A1640.6542.0939-11823A?

    F13A1642.142.139-11823A328.11

    F13A1642.1166.29539-11823A?

    PRL666.30590.4839-11823A?

    PRL690.4990.4939-11823A289.73

    PRL690.596.0239-11823A?

    CMAH696.03101.5439-11823A?

    CMAH6101.55101.5539-11823A271.26

    CMAH6101.56109.2239-11823A?

    MOG6109.23116.8839-11823A?

    MOG6116.89116.8939-11823A259.54

    MOG6116.9117.60539-11823A?

    TNF6117.615118.3139-11823A?

    TNF6118.32118.3239-11823A234.07

    TNF6118.33118.37539-11823A?

    DRB36118.385118.4239-11823A?

    DRB36118.43118.4339-11823A229.98

    DRB36118.44118.48?9,23??

    LMP76118.49118.52?9,23??

    LMP76118.53118.53119-20023A49.76

    LMP76118.54128.045119-20023A?

    PIM16128.055137.55119-20023A?

    PIM16137.56137.56119-20023A102.28

    PIM16137.57137.61119-20023A?

    EST04416137.62137.65119-20023A?

    EST04416137.66137.66119-20023A86.98

    EST04416137.67137.71119-20023A?

    SFRS36137.72137.75119-20023A?

    SFRS36137.76137.76119-20023A96.07

    SFRS36137.77140.855119-20023A?

    CYP21A26140.865143.94119-20023A?

    DMA6140.865143.94119-20023A?

    CYP21A26143.95143.95119-20023A234.07

    DMA6143.95143.95119-20023A66.79

    CYP21A26143.96147.35119-20023A?

    DMA6143.96147.35119-20023A?

    RDS6147.36150.74119-20023A?

    RDS6150.75150.75119-20023A160.87

    RDS6150.76152.78119-20023A?

    GUCA1A6152.79154.8119-20023A?

    GUCA1A6154.81154.81119-20023A136.56

    GUCA1A6154.82159.67119-20023A?

    VEGF6159.68164.52119-20023A?

    VEGF6164.53164.53119-20023A159.85

    VEGF6164.54182.12119-20023A?

    GSTA26182.13199.7119-20023A?

    GSTA26199.71199.71119-20023A222.18

    GSTA26199.72199.945119-20023A?

    MCM36199.955200.17119-20023A?

    MCM36200.18200.18119-20023A213.85

    MCM36200.19253.68?9,23??

    EST16066253.69307.17?9,23??

    EST16066307.18307.18307 - ?9A7.5

    EST16066307.19384.6?9??

    DDO6384.61462.01?9??

    DDO6462.02462.02462-4899B0

    DDO6462.03475.535462-4899B?

    COL10A16475.545489.04462-4899B?

    COL10A16489.05489.05462-4899B39.7

    COL10A16489.06510.26?9,23??

    CTGF6510.27531.46?9,23??

    CTGF6531.47531.47531-6239E14

    CTGF6531.48567.92531-6239E?

    OPRM16567.93604.36531-6239E?

    OPRM16604.37604.37531-6239E40.9

    OPRM16604.38607.315531-6239E?

    EST12236607.325610.25531-6239E?

    EST12236610.26610.26531-6239E62.24

    EST12236610.27612.54531-6239E?

    TCTEL16612.55614.81531-6239E?

    TCTEL16614.82614.82531-6239E98.24

    TCTEL16614.83617.485531-6239E?

    VIL26617.495620.14531-6239E?

    VIL26620.15620.15531-6239E69.64

    VIL26620.16620.38531-6239E?

    IGF2R6620.39620.6531-6239E?

    IGF2R6620.61620.61531-6239E82.64

    IGF2R6620.62621.72531-6239E?

    PLG6621.73622.82531-6239E?

    PLG6622.83622.83531-6239E86.57

    EST15487049.92?4,25??

    EST1548749.9349.9350 - ?25C65.94

    EST1548749.9452.81?4,25??

    EST1081752.8255.68?4,25??

    EST1081755.6955.6956-604A91.25

    EST1081755.757.96556-604A?

    D26549757.97560.2356-604A?

    D2654