converting dart hapmap to hapmap acceptable by...

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Converting Dart Hapmap to Hapmap acceptable by Tassel 1. Open your file in excel an focus to the below columns 2. In the #rs column fill it with marker ID ensure that they unique numbers see below 3. Fill in the chromosome and position information as as below

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ConvertingDartHapmaptoHapmapacceptablebyTassel1. Openyourfileinexcelanfocustothebelowcolumns

2. Inthe#rscolumnfillitwithmarkerIDensurethattheyuniquenumbersseebelow

3. Fillinthechromosomeandpositioninformationasasbelow

4. Forthechromosomeandpositionsthosethataremissingputdummypositions

seebelow

putdummypositionsasbelow

5. Removeallothercolumnsbeforethe#rs

6. Removethefirstsixrowsthathavemostlyasteri7.

8. Ensurethatyoursamplenamesdonothavespacesbetweenthecharactersyou

canfindareplacetoremoveforspaces.

9. Saveyourfileastxtformat

10. Importthedatatotasselyouwillgetthebelowerror

11. TosortitgotothetasselmenuandselectData–sortgenotypefile(selectyourfileandanoutputfile)seebelow.

12. Nowopenthefileitshouldopen