crowdsourcing genome annotation - amazon s3 · 2015-12-04 · bionode .io bionode a node.js...

Crowdsourcing Genome Annotation Bruno Vieira | Queen Mary, University of London bmpvieira.com/ccs14 @bmpvieira

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Page 1: Crowdsourcing Genome Annotation - Amazon S3 · 2015-12-04 · bionode .io bionode A Node.js JavaScript library for client and server side bioinformatics. Created Date: 20140225004016Z

CrowdsourcingGenomeAnnotationBruno Vieira | Queen Mary, University of London

bmpvieira.com/ccs14@bmpvieira

http://bmpvieira.com/ccs14

http://twitter.com/bmpvieira

Page 2: Crowdsourcing Genome Annotation - Amazon S3 · 2015-12-04 · bionode .io bionode A Node.js JavaScript library for client and server side bioinformatics. Created Date: 20140225004016Z

?What is genomeannotation?

Page 3: Crowdsourcing Genome Annotation - Amazon S3 · 2015-12-04 · bionode .io bionode A Node.js JavaScript library for client and server side bioinformatics. Created Date: 20140225004016Z

Demo

afra.sbcs.qmul.ac.uk

http://afra.sbcs.qmul.ac.uk/

Page 4: Crowdsourcing Genome Annotation - Amazon S3 · 2015-12-04 · bionode .io bionode A Node.js JavaScript library for client and server side bioinformatics. Created Date: 20140225004016Z

AfraWeb App to Crowdsource/Gamify GenomeAnnotation

Page 5: Crowdsourcing Genome Annotation - Amazon S3 · 2015-12-04 · bionode .io bionode A Node.js JavaScript library for client and server side bioinformatics. Created Date: 20140225004016Z

Open Source

Anurag Priyam

github.com/yeban/afra

@yeban

http://github.com/yeban/afra

http://twitter.com/yeban

Page 6: Crowdsourcing Genome Annotation - Amazon S3 · 2015-12-04 · bionode .io bionode A Node.js JavaScript library for client and server side bioinformatics. Created Date: 20140225004016Z

WebApollo

github.com/gmod/apolloapollo.berkeleybop.org

http://github.com/gmod/apollo

http://apollo.berkeleybop.org/

Page 7: Crowdsourcing Genome Annotation - Amazon S3 · 2015-12-04 · bionode .io bionode A Node.js JavaScript library for client and server side bioinformatics. Created Date: 20140225004016Z

Software Stack

Bionode

github.com/bionode/bionode

http://github.com/bionode/bionode

Page 9: Crowdsourcing Genome Annotation - Amazon S3 · 2015-12-04 · bionode .io bionode A Node.js JavaScript library for client and server side bioinformatics. Created Date: 20140225004016Z

GamifyScoresOpen BadgesCertificates of Expertise

Page 10: Crowdsourcing Genome Annotation - Amazon S3 · 2015-12-04 · bionode .io bionode A Node.js JavaScript library for client and server side bioinformatics. Created Date: 20140225004016Z

Machine LearningUse data generated by users to improve geneprediction models

Page 11: Crowdsourcing Genome Annotation - Amazon S3 · 2015-12-04 · bionode .io bionode A Node.js JavaScript library for client and server side bioinformatics. Created Date: 20140225004016Z

Thanks! Questions?

Bruno Vieira

Anurag Priyam

Yannick Wurm

@bmpvieira

@yeban

@yannick__bmpvieira.com/ccs14

Bruno Vieira CC-BY 4.0

http://twitter.com/bmpvieira

http://twitter.com/yeban

http://twitter.com/yannick__

http://bmpvieira.com/ccs14

http://bmpvieira.com/

http://creativecommons.org/licenses/by/4.0/deed.en_US

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