developing new varieties: plant breeding sherry flint-garcia research geneticist usda-ars department...
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Developing New Varieties:Plant Breeding
Sherry Flint-Garcia
Research Geneticist
USDA-ARS
Department of Agronomy
Source: USDA
Source: USDA
Source: USDA
Source: USDASource: USDA
Plants
~ 350,000 species world-wide
< 300 used for food
~ 150 important in world commerce
15 major food sourceswheat, corn, rice, barley, sorghum
soybean, phaseolus (bean), peanut
potato, sweet potato, cassava
coconut, banana
sugar cane, sugar beet
Plant Breeding
Private Sector, Universities,
USDA, International Organizations
Biochemistry
Yield
ProtectionQualityEntomology
Physiology
PlantPathologyNutrition
Genetics
Molecular Biology
Statistics
Source: USDA
Plant Breeding
Identify/generate variationGermplasm collections
Induced variation
Hybridization/recombination
Select for desired characteristicsDepends on the crop and its end use
Evaluate selections
Sou
rce:
US
DA
Source: USDA
Variation – Germplasm Collections
Primary gene pool (same species) Elite cultivars Landraces (primitive cultivars) Wild plants of the same species
Secondary gene poolCultivars, landraces, or wild
plants of different species“Wide crosses”
Potato Germplasm Introduction Station (NR6)
North Central Regional PlantIntroduction Station (NC7)
Sou
rce:
US
DA
Source: USDA
Variation – Induced Variation
PolyploidyTreat plants with chemical to induce
polyploidy
MutationNatural rates are ~1 per million cell divisions
Increase rate by using radiation or chemicals
Biotechnology/Genetic Engineering Ability to cross the species/kingdom barriers
Variation – Hybridization and Recombination
Parent 1 Parent 2
F1
F2
(self pollinate) Recombination
Hybridization
Self- vs. Cross-pollinated Crops
Self-pollinated – wheat and soybeansUses pollen and egg from the same plant to
produce seed
Few seeds per hand pollination (3-15)
Cross-pollinated – Corn and squashUses pollen from one plant to fertilize an egg
from another plant
Many seeds per hand pollination (300-400)
SelectionSelf-pollinated crops
Mass selection – bulking of selections
Pure line – test each selection separately
Cross-pollinated cropsMass selection
Half- and Full-sib selection – hybrids
Recurrent selection – intermate selected lines
Backcross
Marker-assisted selection
Recurrent Selection
Used for parent building/population developmentGenerate families
Test family performance
Recombine selected families to complete a cycle of selection
random mate
Cycle 0
Cycle 1
Divergent Selectionfor Stalk Strength
0 1 2 3 4 5 6 7 8 9 10 11
Rind penetrometer resistance bins (each 0.25 kg)
0
100
200
300
400
500
Fre
quen
cy
2530 data points for Cycle 0Mean = 4.37 for B73 x Mo17Mean = 4.40 for Cycle 0
2699 data points for B73 x Mo17
B73 x Mo17
Cycle 0
0 1 2 3 4 5 6 7 8 9 10 11
Rind penetrometer resistance bins (each 0.25 kg)
0
100
200
300
400
500
Fre
quen
cy
2446 data points for high2508 data points for low
High sel.
Low sel.
Hig
h m
ea
n =
6.5
4
Lo
w m
ea
n =
3.0
9
Cycle 0 and B73 x Mo17 Cycle 6 low and high
Evaluation
Phenotypic (trait) variation can be caused by:Environment = soil fertility, weather, biotic and
abiotic stresses
Genotype** = genes responsible for trait
** This is what plant breeders want to exploit
Replicated trials to find stability across environments
Look at many – save a few!300 Lines
5-10 advance to the next generation
GOAL:
Rapid Reliable
Inexpensive
Corn Anatomy
Tassel - ♂♂ Sheds pollen at maturity
Ear - ♀♀Each silk is attached to one ovule.
Pollen tube grows down silk and fertilizes ovule.
Photo courtesy of Maize Mapping Project
First Plant Breeders
Thousands of years ago:Likely women selected plants that they liked
Hundreds of years ago:Farmers had their favorite “family” variety
1926 Pioneer Hi-Bred was foundedFirst commercial hybrid seed company
First Traits Selected
Non-shattering Altered photoperiod and vernalizationLoss of dormancy/rapid germinationSeed size and abundanceAnnual habitLoss of defensive structuresUniformity (germination and maturation)
Today’s Important Traits
Altered Seed CompositionAmino acid, fatty acid, starch
Grain Quality:Baking quality, brewing quality
Resistance to biotic and abiotic stressesTolerance/resistance to diseases and insects
Tolerance of poor soils – salinity, acidity
Yield – the bottom line!
Bu
shel
s P
er A
cre
Year
Open Pollinated Varieties
Double Cross Hybrids
Single Cross Hybrids
Does plant breeding work?
Corn Yield Trends: 1870 to Today
Heterosis in Maize
Bu
sh
els
Pe
r A
cre
Year
Single CrossHybrid
InbredA
InbredB
Double Cross Hybrid
InbredA
InbredB
InbredC
InbredD
Hybrid1
Hybrid2
Green Revolution in Wheat
Funded by the Rockefeller Foundation in 1940s and 1950s
Led by Dr. Norman Borlaug Wheat pathologist and breeder
Semi-dwarf varieties with resistance to stem rust
Wheat yields in Mexico From 11 bu/a (1943) to 30 bu/a (1963)
Wheat variety ‘Ernie’
Derived from pedigree selection at the University of Missouri
First soft red winter wheat with Scab resistance (fungal disease)
Very early maturity that permits its use in double cropping systems
Photo courtesy of Anne McKendry
Photo courtesy of Anne McKendry
“Calrose 76”
Semi-dwarf rice variety
Developed in California in 1976
Product of mutation-breeding program
Continues to be a parent in breeding programs today
Triticale: A “new” crop
Triticale is a cross of wheat (♀♀) and rye (♂♂) followed by induced polyploidization
High yield and baking qualityConfers traits of tolerance to acid soils and
salinity, drought tolerance, winter hardiness, rust and mildew resistance, and higher lysine
Grown on 7.5 million acres (acid and marginal soils) in the world – primarily Australia, Brazil, France, Germany, Poland, and South Africa
New Birdsfoot Trefoil with Rhizomes
U.S. trefoil has persistence problems because of root and crown rot
U.S. varieties lack rhizomesPaul Beuselinck, USDA-ARS, Columbia,
collected a rhizomatous birdsfoot trefoil in Morocco and has bred it into U.S. germplasm resulting in release of ARS-2620
Grazing studies show increased persistence in pastures
Where Do Most New Varieties Come From?
Selfing out of existing varieties and testingCrosses among existing lines and
varieties followed by selfing and testing
Yes, this approach seems to be self-limiting (funnel), but it has worked well thus far in many crops
Glossary
Phenotype: The observable physical or biochemical characteristics of an organism
Genotype: The genetic constitution of an organism
Inbred: A plant that is produced through self-pollination over many generations; “true breeding”
Hybrid: A plant that is produced by cross-pollinating two inbreds
Hybridization: The act of mixing different species or varieties of animals or plants
Recombination: A combining of genes or characters different from what they were in the parents