dna barcoding publications - fapesp · laurus nobilis sm-s.n. lindera benzoin k-16947 litsea cubeba...
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CBoL
http://www.barcoding.si.edu/
Philosophical Transactions: Biological SciencesIssue: Volume 360, Number 1462 / October 29, 2005
BOLs
• BarcodeBlog http://phe.rockefeller.edu/barcode/blog
• BOLI-Barcode of Life Initiative www.dnabarcodes.org
• BOLInfoNET-Barcode of Life InfoNET www.bolinfonet.org
• BOLNET-Canadian Barcode of Life Network www.bolnet.ca
• CBOL-Consortium for the Barcode of Life www.barcoding.si.edu
• CCDB-Canadian Centre for DNA Barcoding www.dnabarcoding.ca
• ECBOL-European Consortium for the Barcode of Life www.ecbol.org
• iBOL-International Barcode of Life www.ibolproject.org
• NBOL-Barcode of Life NL www.dnabarcoding.nl
Campaigns
• ABBI www.barcodingbirds.org
• AllLeps-Lepidoptera Barcode of Life www.lepbarcoding.org
• Bee-BOL www.bee-bol.org
• CMarZ-Census of Marine Zooplankton www.cmarz.org
• FISH-BOL-Fish Barcode of Life www.fishbol.org
• Barcoding Invasive and Pest Species barcoding.si.edu/INBIPS.htm
• MarBOL-Marine Barcode of Life www.marinebarcoding.org
• MBI-Mosquito Barcode Initiative
• PolarBOL-Polar Barcode of Life www.polarbarcoding.org
• QBOL-Quarantine Barcode of Life www.qbol.org
• TBI-Tephritid Barcode Initiative
Consortium for the Genetic Identification of
Neotropical Plants
Cassio van den Berg- Brasil
Gerardo Salazar – México
Santiago Madriñán – Colombia
Consortium for the Genetic Identification of
Neotropical Plants
Cassio van den Berg- Brasil
Gerardo Salazar – México
Santiago Madriñán – Colombia
http://ArBOL.uniandes.edu.co
Sampling Priorities
AvailabilityPlots
DNA Banks
Usetimber
medicinalfood
ComplexTaxonomy
UniqueEcosystems
Resources
• Interested botanical community
• Active molecular laboratories
• Botanical Gardens
• Well-established Forestry Networks w/ Permanent Plots
20 Forest Plots in 15 CountriesMore than 75 Partner Institutions Worldwide
Center for Tropical Forest Science (CTFS)
Projects at the “Laboratorio de Botánica y Sistemática”
• Sensitivity Tests
– Families with complex taxonomy
– Large genera
– Recently evolved floras
Lauraceae
accD matK ndhJ rpoB rpoC1
Actinodaphne glabra K-8202
Actinodaphne pruinosa K-8203
Aiouea dubia AN-417
Beilschmiedia pendula BCI-065681
Beilschmiedia pendula BCI-170421
Beilschmiedia pendula BCI-257596
Beilschmiedia tawa K-5519
Caryodaphnopsis cogolloy JAUM-s.n.
Cinnamomum camphora K-6469
Cinnamomum dictyoneuron K-8201
Cinnamomum obtusifolium K-8303
Cinnamomum triplinerve BCI-206711
Cinnamomum triplinerve BCI-240764
Cinnamomum triplinerve SM-Ama-005
Cinnamomum zeylanicum K-8306
Cryptocarya triplinervis K-5522
Dodecadenia grandiflora K-5520
Endlicheria sp. 1 SM-Ama-006
Endlicheria sp. 2 SM-Ama-003
Lauraceae sp. 1 A-1535
Lauraceae sp. 2 NN-BCI?
Laurus azorica K-21989
Laurus nobilis SM-s.n.
Lindera benzoin K-16947
Litsea cubeba K-15475
Nectandra cissiflora BCI-216314
Nectandra cissiflora BCI-233922
Nectandra cissiflora BCI-244145
Nectandra cissiflora BCI-269005
Nectandra cuspidata FC-1579
Nectandra cuspidata Gamboa-s.n.
Nectandra 'fuzzy' BCI-036152
Nectandra 'fuzzy' BCI-105750
Nectandra lineata BCI-065446
Nectandra lineata BCI-220065
Nectandra purpurea BCI-151022
Nectandra purpurea BCI-277412
Nectandra purpurea BCI-415163
Nectandra sp. 1 AN-410
Nectandra sp. 1 AN-411
Neolitsea aciculata K-17739
Ocotea callophyla SM-s.n.
Ocotea cernua BCI-206437
Ocotea cernua BCI-215988
Ocotea cernua BCI-412951
Ocotea floribunda HD-1166
Ocotea guianensis A-818
Ocotea oblonga BCI-309078
Ocotea oblonga BCI-403510
Ocotea puberula BCI-146684
Ocotea puberula BCI-272219
Ocotea puberula BCI-716317
Ocotea sp. 1 HD-1167
Ocotea whitei BCI-008086
Ocotea whitei BCI-306277
Persea americana SM-s.n.
Persea caerulea Sánchez-4911
Persea rimosa K-8204
Rhodostemonodaphne frontinoensis Brant-1387
Rhodostemonodaphne kunthiana HD-1175
Rhodostemonodaphne kunthiana Madriñán-717
Rhodostemonodaphne penduliflora SM-s.n.
Sassafras albidum K-16948
accD matK ndhJ rpoBrpoC
1
Genera 17 17 16 17 17
Species 42 40 36 42 43
Specimens 47 58 42 48 49
Sp. w/ >1
specimen5 11 6 6 6
matK
0
100
200
300
400
500
0.00
0.01
0.02
0.03
0.04
0.05
0.06
0.07
0.08
0.09
0.10
0.11
0.12
0.13
0.14
0.15
0.16
0.17
0.18
0.19
0.20
0.21
0.22
0.23
0.24
0.25
0.26
0.27
0.28
0.29
K2P Distance
Freq
uen
cy
Inter Intra
GenBank Accessions
accD matK ndhJ rpoB rpoC1 rbcLtrnH-
psbA
All GenBank 1,509 19,354 305 7,144 1,445 36,228 904
Viridiplantae 838 19,299 278 590 904 29,627 903
Lauraceae 0 158 0 0 0 9 50
ITS
1047 chars.
167 variable uninformative
204 informative
Tree search aborted after 30000 trees
669 steps
CI = 0.744
Hypericum in Páramos