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DNA damage and repair DNA damage and repair William Kaufmann 31-325 LCCC 966-8209 [email protected]

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Page 1: DNA damage and repair lecture - unc.edu · DNA damage and repair ... Fanconi’s anemia - DNA repair. BRCA2 and 5 other genes ... Microsoft PowerPoint - DNA damage and repair lecture.ppt

DNA damage and repairDNA damage and repair

William Kaufmann31-325 LCCC 966-8209

[email protected]

Page 2: DNA damage and repair lecture - unc.edu · DNA damage and repair ... Fanconi’s anemia - DNA repair. BRCA2 and 5 other genes ... Microsoft PowerPoint - DNA damage and repair lecture.ppt
Page 3: DNA damage and repair lecture - unc.edu · DNA damage and repair ... Fanconi’s anemia - DNA repair. BRCA2 and 5 other genes ... Microsoft PowerPoint - DNA damage and repair lecture.ppt
Page 4: DNA damage and repair lecture - unc.edu · DNA damage and repair ... Fanconi’s anemia - DNA repair. BRCA2 and 5 other genes ... Microsoft PowerPoint - DNA damage and repair lecture.ppt

The four R’s of human

DNA metabolism

Page 5: DNA damage and repair lecture - unc.edu · DNA damage and repair ... Fanconi’s anemia - DNA repair. BRCA2 and 5 other genes ... Microsoft PowerPoint - DNA damage and repair lecture.ppt
Page 6: DNA damage and repair lecture - unc.edu · DNA damage and repair ... Fanconi’s anemia - DNA repair. BRCA2 and 5 other genes ... Microsoft PowerPoint - DNA damage and repair lecture.ppt
Page 7: DNA damage and repair lecture - unc.edu · DNA damage and repair ... Fanconi’s anemia - DNA repair. BRCA2 and 5 other genes ... Microsoft PowerPoint - DNA damage and repair lecture.ppt
Page 8: DNA damage and repair lecture - unc.edu · DNA damage and repair ... Fanconi’s anemia - DNA repair. BRCA2 and 5 other genes ... Microsoft PowerPoint - DNA damage and repair lecture.ppt
Page 9: DNA damage and repair lecture - unc.edu · DNA damage and repair ... Fanconi’s anemia - DNA repair. BRCA2 and 5 other genes ... Microsoft PowerPoint - DNA damage and repair lecture.ppt

Mechanism of

cytotoxicityof topoIpoisons

Page 10: DNA damage and repair lecture - unc.edu · DNA damage and repair ... Fanconi’s anemia - DNA repair. BRCA2 and 5 other genes ... Microsoft PowerPoint - DNA damage and repair lecture.ppt

TopoII reactions

Page 11: DNA damage and repair lecture - unc.edu · DNA damage and repair ... Fanconi’s anemia - DNA repair. BRCA2 and 5 other genes ... Microsoft PowerPoint - DNA damage and repair lecture.ppt

DNA strand scission by

topoIIpoisons

Page 12: DNA damage and repair lecture - unc.edu · DNA damage and repair ... Fanconi’s anemia - DNA repair. BRCA2 and 5 other genes ... Microsoft PowerPoint - DNA damage and repair lecture.ppt

Sites of alkylation of

DNA

Page 13: DNA damage and repair lecture - unc.edu · DNA damage and repair ... Fanconi’s anemia - DNA repair. BRCA2 and 5 other genes ... Microsoft PowerPoint - DNA damage and repair lecture.ppt
Page 14: DNA damage and repair lecture - unc.edu · DNA damage and repair ... Fanconi’s anemia - DNA repair. BRCA2 and 5 other genes ... Microsoft PowerPoint - DNA damage and repair lecture.ppt

BP adduct on DNA

Page 15: DNA damage and repair lecture - unc.edu · DNA damage and repair ... Fanconi’s anemia - DNA repair. BRCA2 and 5 other genes ... Microsoft PowerPoint - DNA damage and repair lecture.ppt

An arrested replicon

Page 16: DNA damage and repair lecture - unc.edu · DNA damage and repair ... Fanconi’s anemia - DNA repair. BRCA2 and 5 other genes ... Microsoft PowerPoint - DNA damage and repair lecture.ppt

Pathways of DNA repairO6-alkylguanine DNA alkyltransferase

suicide protein transfers methyl group

Base excision repair

glycosylase, AP endonuclease, DNA polymerase, ligase

Nucleotide excision repair

transcription-coupled and global

Cross-link repair

Fanconi’s anemia genes and BRCA2

Double-strand break repair

Homologous recombination and non-homologous end- joining

Heteroduplex and mismatch repair

Post-replication repair; translesion synthesis by pol eta, zeta, iota or kappa

Page 17: DNA damage and repair lecture - unc.edu · DNA damage and repair ... Fanconi’s anemia - DNA repair. BRCA2 and 5 other genes ... Microsoft PowerPoint - DNA damage and repair lecture.ppt
Page 18: DNA damage and repair lecture - unc.edu · DNA damage and repair ... Fanconi’s anemia - DNA repair. BRCA2 and 5 other genes ... Microsoft PowerPoint - DNA damage and repair lecture.ppt

Nucleotide excision

repair

Page 19: DNA damage and repair lecture - unc.edu · DNA damage and repair ... Fanconi’s anemia - DNA repair. BRCA2 and 5 other genes ... Microsoft PowerPoint - DNA damage and repair lecture.ppt
Page 20: DNA damage and repair lecture - unc.edu · DNA damage and repair ... Fanconi’s anemia - DNA repair. BRCA2 and 5 other genes ... Microsoft PowerPoint - DNA damage and repair lecture.ppt

Pathways of repair of DNA double strand breaks

Non-homologous end-joining; DNA-PK, Ku70/80, XRCC1, DNA ligase IV; immunoglobulin and TCR gene rearrangement

Homologous recombination: rad51,52, XRCC2,3,4

Page 21: DNA damage and repair lecture - unc.edu · DNA damage and repair ... Fanconi’s anemia - DNA repair. BRCA2 and 5 other genes ... Microsoft PowerPoint - DNA damage and repair lecture.ppt
Page 22: DNA damage and repair lecture - unc.edu · DNA damage and repair ... Fanconi’s anemia - DNA repair. BRCA2 and 5 other genes ... Microsoft PowerPoint - DNA damage and repair lecture.ppt

Crosslink repair requires

Fanconi’sanemia genes and BRCA2

Page 23: DNA damage and repair lecture - unc.edu · DNA damage and repair ... Fanconi’s anemia - DNA repair. BRCA2 and 5 other genes ... Microsoft PowerPoint - DNA damage and repair lecture.ppt
Page 24: DNA damage and repair lecture - unc.edu · DNA damage and repair ... Fanconi’s anemia - DNA repair. BRCA2 and 5 other genes ... Microsoft PowerPoint - DNA damage and repair lecture.ppt

Familial cancer syndromes

Ataxia telangiectasia - cell cycle checkpoint function, DNA repair. ATM, NBS1, MRE-11

Fanconi’s anemia - DNA repair. BRCA2 and 5 other genes

HNPCC - mismatch repair, hMSH2, hMLH1, PMS2, hMSH6

Xeroderma pigmentosum - nucleotide excision repair and post-replication repair. 8 XP genes

Familial breast cancer I - S and G2 checkpoint responses. BRCA1

Li-Fraumeni syndrome – cell cycle checkpoint function and DNA repair. P53, Chk2

Bloom’s syndrome, Werner syndrome, Rothmund-Thompson syndrome – chromosomal instability. Blm, Wrn, RecQ

Page 25: DNA damage and repair lecture - unc.edu · DNA damage and repair ... Fanconi’s anemia - DNA repair. BRCA2 and 5 other genes ... Microsoft PowerPoint - DNA damage and repair lecture.ppt
Page 26: DNA damage and repair lecture - unc.edu · DNA damage and repair ... Fanconi’s anemia - DNA repair. BRCA2 and 5 other genes ... Microsoft PowerPoint - DNA damage and repair lecture.ppt
Page 27: DNA damage and repair lecture - unc.edu · DNA damage and repair ... Fanconi’s anemia - DNA repair. BRCA2 and 5 other genes ... Microsoft PowerPoint - DNA damage and repair lecture.ppt
Page 28: DNA damage and repair lecture - unc.edu · DNA damage and repair ... Fanconi’s anemia - DNA repair. BRCA2 and 5 other genes ... Microsoft PowerPoint - DNA damage and repair lecture.ppt
Page 29: DNA damage and repair lecture - unc.edu · DNA damage and repair ... Fanconi’s anemia - DNA repair. BRCA2 and 5 other genes ... Microsoft PowerPoint - DNA damage and repair lecture.ppt

Spindle assembly and polyploidization checkpoints

control

colcemid

NHF-neo NHF-E6

Page 30: DNA damage and repair lecture - unc.edu · DNA damage and repair ... Fanconi’s anemia - DNA repair. BRCA2 and 5 other genes ... Microsoft PowerPoint - DNA damage and repair lecture.ppt

P53-dependent G1 checkpoint function

Page 31: DNA damage and repair lecture - unc.edu · DNA damage and repair ... Fanconi’s anemia - DNA repair. BRCA2 and 5 other genes ... Microsoft PowerPoint - DNA damage and repair lecture.ppt

ATM, Nbs1, and Mre11 are required for the IR-induced S checkpoint.

NHF1

0.00

0.05

0.10

0.150.20

0.25

0.30

0.35

0 10 20 30

Sham 1.5 Gy

ATM -/-

0.000.100.200.300.400.500.600.700.80

0 10 20 30

Sham 1.5 Gy

NBS1 -/-

0.00

0.10

0.20

0.300.40

0.50

0.60

0.70

0 10 20 30

Sham 1.5Gy

Mre11 -/-

0.00

0.10

0.20

0.30

0.40

0.50

0.60

0 10 20 30

Sham 1.5 Gy

Nor

mal

ized

3 H C

PM

Fraction Number

Page 32: DNA damage and repair lecture - unc.edu · DNA damage and repair ... Fanconi’s anemia - DNA repair. BRCA2 and 5 other genes ... Microsoft PowerPoint - DNA damage and repair lecture.ppt

ATR is an essential checkpoint kinase

Ataxia telangiectasia- and rad3-related

ATR-null embryos die at day 3 with severe chromosomal damage

Expression of kinase-inactive ATR overrides checkpoint responses to IR and UVC

Page 33: DNA damage and repair lecture - unc.edu · DNA damage and repair ... Fanconi’s anemia - DNA repair. BRCA2 and 5 other genes ... Microsoft PowerPoint - DNA damage and repair lecture.ppt

Cell Cycle CheckpointsCell Cycle CheckpointsMM SSGG11 GG22 MM

G1Delay

G2 Delay

IR

DNA Damage

ATM/ATR

p53 CHK1

p21/14-3-3 CDC25C

Cyclin B1 / CDC2

UV IR

DNA Damage

ATR ATM

p53 CHK2

p21

Cyclin / CDK’s

Plk-1

Crm1

Page 34: DNA damage and repair lecture - unc.edu · DNA damage and repair ... Fanconi’s anemia - DNA repair. BRCA2 and 5 other genes ... Microsoft PowerPoint - DNA damage and repair lecture.ppt

Passive and active inhibition

of DNA replication by

UVC

Page 35: DNA damage and repair lecture - unc.edu · DNA damage and repair ... Fanconi’s anemia - DNA repair. BRCA2 and 5 other genes ... Microsoft PowerPoint - DNA damage and repair lecture.ppt

Mechanisms and consequences of inhibition of DNA replication by UVC

TT TTATR

Chk1

DNA pol η/ζ

DNA dsb

ATM G2 checkpoint

Replicon initiation

Block pol α/δ

TT

NERp53 p48

Page 36: DNA damage and repair lecture - unc.edu · DNA damage and repair ... Fanconi’s anemia - DNA repair. BRCA2 and 5 other genes ... Microsoft PowerPoint - DNA damage and repair lecture.ppt

UVC-induced chromosomal aberrations

Page 37: DNA damage and repair lecture - unc.edu · DNA damage and repair ... Fanconi’s anemia - DNA repair. BRCA2 and 5 other genes ... Microsoft PowerPoint - DNA damage and repair lecture.ppt

Evolution of DNA damage during the cell cycle