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DNA Variant Calling Workshop How to call genomic variations and uncover their effects In a Nutshell • Understand NGS technologies, data formats and algorithms • Learn essential computing skills for NGS bioinformatics • Use bioinformatics tools to predict variants • Uncover the effects of relevant variants Scope and Topics The purpose of this workshop is to predict single nucleotide variations (SNVs) using Next-Generation Sequencing (NGS). Advantages and disadvantages of current tools and their implications on downstream analyses will be discovered. The participants will be trained on analyzing their own NGS data, finding potential SNVs therein and finally perform downstream analyses including the prediction of variant effects, analyses of affected pathways, associations of detected SNPs to diseases, etc. In the course we will use a real-life DNA-seq dataset from the current market leader illumina. All workshop attendees will be enabled to perform important first tasks of NGS data analysis them- selves. The course layout has been adapted to the needs of beginners in the field of NGS bioinfor - matics and allows scientists with no or little background in computer science to get a first hands-on experience in this new and fast evolving research topic. Trainers Dr. Jörg Linde Dr. Rina Ahmed Hans Knöll Institute CCR Bio-IT Dr. Mario Fasold CCR Bio-IT Registration Fee 998 EUR (excluding VAT) Travel expenses and accommodation are not covered by the registration fee. DATE September 21–23, 2016 TIME 9 am – 5 pm VENUE Berlin, Germany Advance your research and uncover genomic variations and their effects. The target audience is biologists or data analysts with no or little experience in analyzing DNA-Seq data. Included in the Course Course materials Catering during the workshop Conference dinner High-performance workstations (no laptop needed) ecSeq GmbH · Brandvorwerkstrasse 43 · 04275 Leipzig · Germany plus.google.com/+Ecseq · twitter.com/ecSeq · Skype: ecSeq.bioinformatics · [email protected] · www.ecseq.com Enroll Today! ecseq.com/workshops/public

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Page 1: DNA Variant Calling Workshop - ecSeq Bioinformatics · DNA Variant Calling Workshop How to call genomic variations and uncover their effects In a Nutshell • Understand NGS technologies,

DNA Variant Calling Workshop How to call genomic variations and uncover their effects

In a Nutshell•Understand NGS technologies, data formats and algorithms•Learn essential computing skills for NGS bioinformatics•Use bioinformatics tools to predict variants•Uncover the effects of relevant variants

Scope and TopicsThe purpose of this workshop is to predict single nucleotide variations (SNVs) using Next-Generation Sequencing (NGS). Advantages and disadvantages of current tools and their implications on down-stream analyses will be discovered. The participants will be trained on analyzing their own NGS data, findingpotentialSNVsthereinandfinallyperformdownstreamanalysesincludingthepredictionofvariant effects, analyses of affected pathways, associations of detected SNPs to diseases, etc. In the course we will use a real-life DNA-seq dataset from the current market leader illumina.

AllworkshopattendeeswillbeenabledtoperformimportantfirsttasksofNGSdataanalysisthem-selves.ThecourselayouthasbeenadaptedtotheneedsofbeginnersinthefieldofNGSbioinfor-maticsandallowsscientistswithnoorlittlebackgroundincomputersciencetogetafirsthands-onexperience in this new and fast evolving research topic.

Trainers Dr. Jörg Linde Dr. Rina Ahmed Hans Knöll Institute CCR Bio-IT

Dr. Mario Fasold CCR Bio-IT

Registration Fee998 EUR (excluding VAT) Travel expenses and accommodation are not covered by the registration fee.

DATE September 21–23, 2016 TIME 9 am – 5 pm VENUE Berlin, Germany

Advance your research and uncover genomic variations and their effects.

The target audience is biologists or data analysts with no or little experience in analyzing DNA-Seq data.

Included in the Course Course materials Catering during the workshop Conference dinner High-performance workstations

(no laptop needed)

ecSeq GmbH · Brandvorwerkstrasse 43 · 04275 Leipzig · Germanyplus.google.com/+Ecseq · twitter.com/ecSeq · Skype: ecSeq.bioinformatics · [email protected] · www.ecseq.com

Enroll Today!

ecseq.com/workshops/public

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