![Page 1: V R A RR V C PVV - GitHub Pages - Hydrogen Bonding.pdf · RR Ab CC R Ab 2 angular part C R P 3 AB t R PP 4 AB t Q R P 2 6 1 t 2 AB C R D. 1.93 A. 1.97 Å . 1.82 Å H-O=C angle H-O=C-C](https://reader033.vdocuments.net/reader033/viewer/2022060219/5f06b3357e708231d4194c48/html5/thumbnails/1.jpg)
![Page 2: V R A RR V C PVV - GitHub Pages - Hydrogen Bonding.pdf · RR Ab CC R Ab 2 angular part C R P 3 AB t R PP 4 AB t Q R P 2 6 1 t 2 AB C R D. 1.93 A. 1.97 Å . 1.82 Å H-O=C angle H-O=C-C](https://reader033.vdocuments.net/reader033/viewer/2022060219/5f06b3357e708231d4194c48/html5/thumbnails/2.jpg)
AH
BH
i n tV
(1) (2)
int2
V VV
R R
A bC C
R
2angular partA bC
R
3angular partA B
R
4angular partA BQ
R
2
6
1angular part
2A BC
R
![Page 3: V R A RR V C PVV - GitHub Pages - Hydrogen Bonding.pdf · RR Ab CC R Ab 2 angular part C R P 3 AB t R PP 4 AB t Q R P 2 6 1 t 2 AB C R D. 1.93 A. 1.97 Å . 1.82 Å H-O=C angle H-O=C-C](https://reader033.vdocuments.net/reader033/viewer/2022060219/5f06b3357e708231d4194c48/html5/thumbnails/3.jpg)
![Page 4: V R A RR V C PVV - GitHub Pages - Hydrogen Bonding.pdf · RR Ab CC R Ab 2 angular part C R P 3 AB t R PP 4 AB t Q R P 2 6 1 t 2 AB C R D. 1.93 A. 1.97 Å . 1.82 Å H-O=C angle H-O=C-C](https://reader033.vdocuments.net/reader033/viewer/2022060219/5f06b3357e708231d4194c48/html5/thumbnails/4.jpg)
![Page 5: V R A RR V C PVV - GitHub Pages - Hydrogen Bonding.pdf · RR Ab CC R Ab 2 angular part C R P 3 AB t R PP 4 AB t Q R P 2 6 1 t 2 AB C R D. 1.93 A. 1.97 Å . 1.82 Å H-O=C angle H-O=C-C](https://reader033.vdocuments.net/reader033/viewer/2022060219/5f06b3357e708231d4194c48/html5/thumbnails/5.jpg)
1.93 A
![Page 6: V R A RR V C PVV - GitHub Pages - Hydrogen Bonding.pdf · RR Ab CC R Ab 2 angular part C R P 3 AB t R PP 4 AB t Q R P 2 6 1 t 2 AB C R D. 1.93 A. 1.97 Å . 1.82 Å H-O=C angle H-O=C-C](https://reader033.vdocuments.net/reader033/viewer/2022060219/5f06b3357e708231d4194c48/html5/thumbnails/6.jpg)
![Page 7: V R A RR V C PVV - GitHub Pages - Hydrogen Bonding.pdf · RR Ab CC R Ab 2 angular part C R P 3 AB t R PP 4 AB t Q R P 2 6 1 t 2 AB C R D. 1.93 A. 1.97 Å . 1.82 Å H-O=C angle H-O=C-C](https://reader033.vdocuments.net/reader033/viewer/2022060219/5f06b3357e708231d4194c48/html5/thumbnails/7.jpg)
1.97 Å
![Page 8: V R A RR V C PVV - GitHub Pages - Hydrogen Bonding.pdf · RR Ab CC R Ab 2 angular part C R P 3 AB t R PP 4 AB t Q R P 2 6 1 t 2 AB C R D. 1.93 A. 1.97 Å . 1.82 Å H-O=C angle H-O=C-C](https://reader033.vdocuments.net/reader033/viewer/2022060219/5f06b3357e708231d4194c48/html5/thumbnails/8.jpg)
1.82 Å
H-O=C angle
H-O=C-C
dihedral angle
![Page 9: V R A RR V C PVV - GitHub Pages - Hydrogen Bonding.pdf · RR Ab CC R Ab 2 angular part C R P 3 AB t R PP 4 AB t Q R P 2 6 1 t 2 AB C R D. 1.93 A. 1.97 Å . 1.82 Å H-O=C angle H-O=C-C](https://reader033.vdocuments.net/reader033/viewer/2022060219/5f06b3357e708231d4194c48/html5/thumbnails/9.jpg)
80 100 120 140 160 180
0
20
40
60
80
C=O...H bond angle (degrees)
C-C
=O
...H
dih
ed
ral an
gle
(de
gre
es)
0.1
1.8
3.4
5.1
6.7
8.4
10.0
electronic energy
(kcal/mol)
acetone-MeOH complex
M05-2X/6-311+g(d,p)
separated reactants:
+7.4 kcal/mol
global min.: -0.11 kcal
angle: 115.7°
dihedral: 4.4°
100 110 120 130 140 150 160 170 180
0
20
40
60
80
C=O-B angle (degrees)
C-C
=O
-B d
ihe
dra
l a
ng
le (
de
gre
es)
0.1
1.8
3.4
5.1
6.7
8.4
10.0
acetone-BF3 complex
M05-2X/6-311+g(d,p)
electronic energy
(kcal/mol)
separated reactants:
+17.4 kcal/mol
global min.:
-0.4 kcal/mol
angle: 124.3°
dihedral: 0.3°
![Page 10: V R A RR V C PVV - GitHub Pages - Hydrogen Bonding.pdf · RR Ab CC R Ab 2 angular part C R P 3 AB t R PP 4 AB t Q R P 2 6 1 t 2 AB C R D. 1.93 A. 1.97 Å . 1.82 Å H-O=C angle H-O=C-C](https://reader033.vdocuments.net/reader033/viewer/2022060219/5f06b3357e708231d4194c48/html5/thumbnails/10.jpg)
![Page 11: V R A RR V C PVV - GitHub Pages - Hydrogen Bonding.pdf · RR Ab CC R Ab 2 angular part C R P 3 AB t R PP 4 AB t Q R P 2 6 1 t 2 AB C R D. 1.93 A. 1.97 Å . 1.82 Å H-O=C angle H-O=C-C](https://reader033.vdocuments.net/reader033/viewer/2022060219/5f06b3357e708231d4194c48/html5/thumbnails/11.jpg)
![Page 12: V R A RR V C PVV - GitHub Pages - Hydrogen Bonding.pdf · RR Ab CC R Ab 2 angular part C R P 3 AB t R PP 4 AB t Q R P 2 6 1 t 2 AB C R D. 1.93 A. 1.97 Å . 1.82 Å H-O=C angle H-O=C-C](https://reader033.vdocuments.net/reader033/viewer/2022060219/5f06b3357e708231d4194c48/html5/thumbnails/12.jpg)
![Page 13: V R A RR V C PVV - GitHub Pages - Hydrogen Bonding.pdf · RR Ab CC R Ab 2 angular part C R P 3 AB t R PP 4 AB t Q R P 2 6 1 t 2 AB C R D. 1.93 A. 1.97 Å . 1.82 Å H-O=C angle H-O=C-C](https://reader033.vdocuments.net/reader033/viewer/2022060219/5f06b3357e708231d4194c48/html5/thumbnails/13.jpg)
![Page 14: V R A RR V C PVV - GitHub Pages - Hydrogen Bonding.pdf · RR Ab CC R Ab 2 angular part C R P 3 AB t R PP 4 AB t Q R P 2 6 1 t 2 AB C R D. 1.93 A. 1.97 Å . 1.82 Å H-O=C angle H-O=C-C](https://reader033.vdocuments.net/reader033/viewer/2022060219/5f06b3357e708231d4194c48/html5/thumbnails/14.jpg)
1.61 A
![Page 15: V R A RR V C PVV - GitHub Pages - Hydrogen Bonding.pdf · RR Ab CC R Ab 2 angular part C R P 3 AB t R PP 4 AB t Q R P 2 6 1 t 2 AB C R D. 1.93 A. 1.97 Å . 1.82 Å H-O=C angle H-O=C-C](https://reader033.vdocuments.net/reader033/viewer/2022060219/5f06b3357e708231d4194c48/html5/thumbnails/15.jpg)
![Page 16: V R A RR V C PVV - GitHub Pages - Hydrogen Bonding.pdf · RR Ab CC R Ab 2 angular part C R P 3 AB t R PP 4 AB t Q R P 2 6 1 t 2 AB C R D. 1.93 A. 1.97 Å . 1.82 Å H-O=C angle H-O=C-C](https://reader033.vdocuments.net/reader033/viewer/2022060219/5f06b3357e708231d4194c48/html5/thumbnails/16.jpg)
0 10 20 30 40 50
0
20
40
60
80
100
120
140
160
180
the
bin
din
g e
ne
rgy o
f th
e c
om
ple
x (
kca
l/m
ol)
NBO's estimate of the charge transfer energy (kcal/mol)
y = 3.6x - 13
R = 0.93
![Page 17: V R A RR V C PVV - GitHub Pages - Hydrogen Bonding.pdf · RR Ab CC R Ab 2 angular part C R P 3 AB t R PP 4 AB t Q R P 2 6 1 t 2 AB C R D. 1.93 A. 1.97 Å . 1.82 Å H-O=C angle H-O=C-C](https://reader033.vdocuments.net/reader033/viewer/2022060219/5f06b3357e708231d4194c48/html5/thumbnails/17.jpg)
2.36 Å
![Page 18: V R A RR V C PVV - GitHub Pages - Hydrogen Bonding.pdf · RR Ab CC R Ab 2 angular part C R P 3 AB t R PP 4 AB t Q R P 2 6 1 t 2 AB C R D. 1.93 A. 1.97 Å . 1.82 Å H-O=C angle H-O=C-C](https://reader033.vdocuments.net/reader033/viewer/2022060219/5f06b3357e708231d4194c48/html5/thumbnails/18.jpg)
2.80 A
![Page 19: V R A RR V C PVV - GitHub Pages - Hydrogen Bonding.pdf · RR Ab CC R Ab 2 angular part C R P 3 AB t R PP 4 AB t Q R P 2 6 1 t 2 AB C R D. 1.93 A. 1.97 Å . 1.82 Å H-O=C angle H-O=C-C](https://reader033.vdocuments.net/reader033/viewer/2022060219/5f06b3357e708231d4194c48/html5/thumbnails/19.jpg)
2.44 A
2.47 A
![Page 20: V R A RR V C PVV - GitHub Pages - Hydrogen Bonding.pdf · RR Ab CC R Ab 2 angular part C R P 3 AB t R PP 4 AB t Q R P 2 6 1 t 2 AB C R D. 1.93 A. 1.97 Å . 1.82 Å H-O=C angle H-O=C-C](https://reader033.vdocuments.net/reader033/viewer/2022060219/5f06b3357e708231d4194c48/html5/thumbnails/20.jpg)
favored TS: NCIPlot
Dr. Alan Hyde
- neither the NBO or AIM-based NCIPlot methods
show the putative formyl C-H…O hydrogen bond
![Page 21: V R A RR V C PVV - GitHub Pages - Hydrogen Bonding.pdf · RR Ab CC R Ab 2 angular part C R P 3 AB t R PP 4 AB t Q R P 2 6 1 t 2 AB C R D. 1.93 A. 1.97 Å . 1.82 Å H-O=C angle H-O=C-C](https://reader033.vdocuments.net/reader033/viewer/2022060219/5f06b3357e708231d4194c48/html5/thumbnails/21.jpg)
disfavored TS: NCIPlot
Dr. Alan Hyde
-it’s still unclear why there’s an energy difference between the
favored and disfavored transition states
-note: calculations were done with B3LYP, which doesn’t
understand pp stacking or other dispersive interactions
-nonetheless, formyl C-H bonds are probably real, but weak
contacts