drug stability & kinecs - 2018 physical and structural ...ruben.ucsd.edu/17/u16.pdfdrug...
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DrugStability&Kine1cs
• Ratesofdrugdissolu/on,permea/on,diffusion,metabolism,bindingarecontrolledbythelawsofchemicalkine/cs
• Liquid(andevensolid)dosagedrugformissuscep/bleto:– Hydrolysis– Oxida1on– Isomeriza/on– Photochemicaldecomposi/on– Polymeriza/on– Precipita/on– …
Time
Kine1csvsThermodynamics
• Rate=Changeperunit/me,e.g.mol/s
• Rateofreac/on=therateatwhichthereactantsaretransformedintotheproducts
• Thermodynamicsestablishesconcentra/onatanequilibrium(infinite/me).“Diamondsareforever” UnboundBound
Diffusionvsconcentra1on
gradient
• Diffusionisthenetac/onofmaQer,heat,light,..whoseendistominimizeaconcentra/ongradientinspace
• Flux,J,istheamountofsubstanceflowingthroughunitareapersecond
• J[molm-2s-1]• Ques/on:HowdoesJdependonthe
concentra/ondifference?
Drug
Fick’sLawsofDiffusion• Relatesthefluxandtheconcentra/on(C)gradient(differenceperunitlength)
• 1stLaw:SteadyState• 2ndLaw:/medependence• Ddependsonthediffusionac/va/onenergy(barrier).
dxdCDJ −=
AdolfEugenFick,1829-1901,aGermanphysiologist,inventedcontactlenses
RTEa
eDD−
= 0
2
2
xCD
tC
∂
∂=
∂
∂
Diffusionasafunc1onofmoleculesize• Largepar/cleshavesmallerdiffusioncoefficients:
D~1/R
MW D(m2s-1)Smallmoleculeinwater 1-1.5x10-9E.g.hydroxybenzoate 152Da 8.44x10-10
Smallproteininwater 10-10E.g.albumin 66kDa 0.46x10-10Phospholipidinmembrane 10-12Proteininmembrane 10-14
Totalamountdiffused• E.g.fromtheintes/nestothebloodstreamthroughintes/nalwalls
• Thetotalamountofdrugabsorbedis
Flux(J)•Area(A)•Time• J[molm-2s-1];J×A[mols-1];J×A×t[mol]• FluxisJ=–P(Cα–Cβ)=–PΔC
– wherePispermeability(relatedtodiffusioncoefficient)
Ax0
● RateLawsandRateConstants
● IntegratedRateLaws● Zero-orderReac/ons
● First-orderReac/ons
● Second-orderReac/ons
● Temperaturedependenceofthe
Reac/onRates(Arrhenius)
RatesofChemicalReac1ons
Reac1onRates• Moleculesoratomsofreactantsmustcollidewitheachotherinchemicalreac/ons(concentra/ons).
• Themoleculesmusthavesufficientenergy(discussedintermsofac/va/onenergy)toini/atethereac/on.Thatleadstok(T)
• Insomecases,theorienta/onofthemoleculesduringthecollisionmustalsobeconsidered.
RateofConsump/on
RateofForma/on
[ ] [ ] [ ] [ ]dtDd
dtCd
dtBd
dtAd
+=+=−=−31
21
Example:A+2B→3C+D
[ ] [ ]dtBd
dtAd
21
−=−
[ ] [ ]dtDd
dtCd
=31
RateofChemicalReac1on
Reversiblereac1ons• Examples:
– Epimeriza/onoftetracyclines
– Chiraltransi/onofthalidomide
BA ⎯→←kf
kr
€
d[A]dt
= −k f [A]+ kr[B] = 0
Keq =[B][A]
=k fkr
Atequilibrium
RatesandEquilibriumConstant
• AóB• Forwardrate:kf[A]• Reverserate:kr[B]• Equilibrium:
kf[A]=kr[B]
• P+LóPL• Forwardrate:kon[P][L]• Reverserate:koff[PL]• Equilibrium:
kon[P][L]=koff[PL]
€
Keq =[B][A]
=k fkr
€
Kbind =[PL][P][L]
=konkoff
Kd =[P][L][PL]
=koffkon
TheuniqueRateofReac/onisdefinedas:
[ ]dtJdrate
jν1
=
whereJisagenericpar/cipanttothereac/onandνjitsstoichiometricnumber.Reac/onRatesarereportedin[molL-1s-1]
TheUniqueRate
RateLawsTheRateLawisanexperimentallydeterminedequa/onthatexpressestherateofreac/onasafunc/onofconcentra/ons:
€
ν = k⋅ f A[ ], B[ ],etc.( )Thecoefficientkiscalledrateconstant.It is o0en possible to write the func/on as aproduct of concentra/ons with constantexponents:
€
v = k A[ ]x B[ ]y C[ ]z
€
v = k A[ ]x B[ ]y C[ ]z
The reac/on is said to be of order x withrespect to [A], etc. The overall order of thereac/onis
x+y+zThe orders are generally unrelated to thestoichiometric coefficients in the reac/onequa/on.E.g.,
[ ]522252 ONkv ,)g(O)g(4NO)g(ON2 =+→
Reac1onOrder
MolecularityvsReac1onOrderTheMolecularity(uni-,bi-,etc.)referstoanelementaryreac/onproposedasastepinamechanismTheReac/onOrderisanempiricalquan/ty,andobtainedfromtheexperimentalRateLawE.g.,Ifthereac/onisanelementarybimolecularprocess,thenithasasecond-orderkine/csBUT,ifthekine/csaresecond-order,thenthereac/onmightbecomplex.
Zero-orderIntegratedRateLaw
IntegratedRateLawsIntegratedRateLawsgivetheconcentra/onsofreactantsandproductsasfunc/onof/meZero-order reac/ons doNOT depend on theconcentra/onandare limitedbyanexternal(constant)concentra/onoffactor.
€
d[A]dt
= −k0, k = mol L-1 s-1[ ]
€
[A] = [A]o − kt
Half-lifeoftheZero-thOrderReac1on• t½=A0/2k0
• Examples:• Degrada/onofsuspensionsorsolidstate
• Dissolu/onofdrugcrystals(assuminginfinitedilu/on)
FirstOrderreac1on• Therateispropor/onaltothe
concentra/on.• Example,radioac/vedecay:
• kisrateconstant• 1storderIntegratedRateLaw:
• Half-life
€
d[A]dt
= −k[A], k = s-1[ ]
2lne21e
21e[A][A]
21
2/1oo2/12/12/1 =⇒=⇒=⇒= −−− ktktktkt
t½=ln2/k=0.693/k
kt−= e[A][A] o
Racemic mixture Single-enantiomer Amphetamine (Benzedrine) dextroamphetamine (Dexedrine) Bupivacaine (Marcain) levobupivacaine (Chirocaine) Cetirizine (Zyrtec / Reactine) levocetirizine (Xyzal) Citalopram (Celexa / Cipramil) escitalopram (Lexapro / Cipralex) Methylphenidate (Ritalin) dexmethylphenidate (Focalin) Modafinil (Provigil) armodafinil (Nuvigil) Ofloxacin (Floxin) levofloxacin (Levaquin) Omeprazole (Prilosec) esomeprazole (Nexium) Salbutamol (Ventolin) levalbuterol (Xopenex) Zopiclone (Imovane) eszopiclone (Lunesta)
Enan1omericdrugformsandtransi1ons
Thalidomide:Oneenan/omeriseffec/veagainstmorningsickness,whereastheotheristeratogenic.However,theenan/omersareconvertedintoeachotherinvivo.Dosingwithasingle-enan/omerformofthedrugwills/llleadtoboththeDandLisomerseventuallybeingpresentinthepa/ent'sserumandthuswouldnotpreventsideeffects(thoughitmightreducethemiftherateofinvivoconversioncanbeslowed).Ethambutol:Whereasoneenan/omerisusedtotreattuberculosis,theothercausesblindness.Naproxen:Oneenan/omerisusedtotreatarthri/spain,buttheothercausesliverpoisoningwithnoanalgesiceffect.
TheTimingofDangeroustransi/ons
TheChemicalDecomposi/on:Hydrolysis
• Thehalflifeisindependentontheini/alconcentra/on,i.e.firstorder
• Pseudo-firstorderkine/cs:oneofthereactantsisinlargeexcess
• Liquiddosageform+drugdecomposi/oninvivo
Hydrolysis:Ester• R-C(=O)O-R’• Methyldopate,tetracaine,procaine,etc.
• FasteratacidicpHPhysos/gmine(cholinesteraseinhibitor)isusedtotreatglaucomaanddelayedgastricemptying
TimingofEsterHydrolysisofAspirin
• InventedbyFelixHoffman,patentedbyBayerin1899
• CleavageoftheAspirinesterisapartofitsCOX-1/2inac/va/onmechanism
• 1%adayhydrolysisofsuspensionofaspirin
Hydrolysis:Lactones,Amide
• Amide:R-C(=O)NH2
• Thereac/oniscatalyzedbyeitheracidorbase
β-propiolactoneγ-butyrolactone(GBL)gluconodelta-lactone(GDL)Caprolactone
• Acyclicester• Lactonesarehydrolyzed
1stOrderreac1on:t½andk
• PlotLog10(Percentage)vs/me• Ifitisastraightline,thereac/onfollowsthe1storderkine/cs
• Calculatetheslope• k1=Slope/ln10=Slope/2.3• t½=0.69/k1
Log
Exampleproblem:1storderreac/on• Q:Thalidomideundergoesspontaneousconversionfrom(+)formto(-)formandvice-versa,withtherateofconversiondependingonthecomposi/onofthesolu/on.Forexample,thehalf-lifeof(+)Thalidomideinhumanplasmais11.5minutes.Es/matetherateconstantforthereac/onofconversionof(+)Thalidomideinto(-)Thalidomideinhumanplasma.
• Hints:– Enan/omerconversionis1storder;henceconstantt1/2– Asksforrateconstant(k),notrate(d[A]/dt=–k[A])
• S:usekt1/2=ln2.t1/2=11.5min=690s.Therateconstantisk=ln2/t1/2=ln2/690~0.001s-1
• A:0.001s-1
SecondOrderreac/ons
• Rateisdeterminedbytheconcentra/onsoftworeac/ngspecies
• Ifbothini/alconcentra/onsarethesame,orbothcomponentsarethesamereactant
[ ]1-1-2 sM ,A][B][
dd[A]
=−= kkt
[ ]1-1-2 sMk ,A][ktd
d[A]=−=
[ ] [ ]tk
AA 20
11=−
Secondorder• A+Btoproducts• 2Atoproducts• E.g.[P]+[L] ↔[PL](in1:1stoichiometry)
• IntegrateRateLaw:
• Halflife(changing): [ ]022/1
1Ak
t =
Exampleproblem:2ndorderreac/on• Q:The1:1bindingreac/onbetweenadruganditsproteintarget
isfirstorderineachofthereactants.Inthesolu/onof1nMproteinand100nMdrug,theini=alrateofcomplexforma/onwasfoundtobe12pM/s.Whatwillbetheini/alrateofcomplexforma/oninthesolu/onof1µMproteinand1µMdrug?
• Hints:– Firstorderineachofthereactantsmeansthatd[PD]/dt=k[P][D].The
reac/onis2ndorderaltogether.– Asksforrate(d[PD]/dt)
• S:When[P]isincreasedfrom1nMto1µM(1000-foldincrease),and[D]isincreasedfrom100nMto1µM(10-foldincrease),theratemustincrease10000-fold.Thenewratewillthenbe12pM/sx104=120nM/s.
• A:120nM/s
Arrhenius• Therateconstantofchemicalreac/on,k
• Pfisthepre-exponen/alfactor(pre-factor),
• Risthegasconstant
RTGactivation
ePfk−
= )( SvanteArrhenius,Swedishphysicalchemist.In1903hebecamethefirstSwedetobeawardedtheNobelPrizeinchemistry.
€
K = e−GAB
RTJacobusvan’tHoff
Review• Thechemicalpoten/alofcomponentJ:– Gas– Liquidmixture– ΔGandentropyofmixing.
• Thechemicalequilibrium– Kviaconcentra/onsandreac/onstoichiometry
– FromK,toΔGo
– FromKatT1andT2,toΔHo,Van’tHoff RT
GKo
rΔ−=ln
⎟⎟⎠
⎞⎜⎜⎝
⎛−
Δ−=⎟⎟
⎠
⎞⎜⎜⎝
⎛
212
1 11lnTTR
HKK o
0
ln0
ccRT ic
ii += µµ
]][[][..,
1 BABAKgeaK
n
iii
•==∏
=
ν
)ln(0
0
PPRT iP
igi += µµ
ai is molar fraction xi or concentration ci or activity depending on the standard state and ideality
RS
RTHK
or
or Δ
+Δ
−=ln
Review• Chemicalpoten/alofthesamemoleculein
differentphasesorcompartments(osmosis)mustbeequal
• Chemicalpoten/alofwaterislower(beQer)insolu/onIfxsolutesissmall:
• Osmo/cpressure:Posm=MRT,whereMismolaritycorrectedbydissocia/on,i,M=iM0
• Osmosis:semipermeablemembranes.• OsmolarityandTonicity:coun/ngsolutes
thatcannotcrossthemembraneandtakingdissocia/onintoaccount(i,van’tHoff’sfactor).
• Boilingpointeleva/on• Freezingpointdepression(Kfdoesnot
dependonsolutes!).Kf=1.858Kkg/mol• Waterpressurereduc/on:Raoult’slaw• Gasdissolu/oninwater:Henry’slaw• Theeffectsareentropicandtothefirst
approxima/ondonotdependonthenatureofsolutes(colliga/veproper/es)
€
µw _ in _ solution = µw _ pure + RT ln(xw )Δµw = RT ln(1− xsolutes) ≈ −RTxsolutesΔSw ≈ Rxsolutes
Posm =ΔnsolV
RT = iMRT
ΔTboiling = KbxsolutesΔTfreezing = K f xsolutesPw_ vap_ solution = Pw_ vap_ purexwaterPsolute_ in_ gas = KHenry
solutexsolute_ in_water
ReviewofEnergyContribu1onstothenon-covalentBindingEnergy
• q-q:Coulomb:(+)or(-),stronginnon-polarmediumandweakinwater.Longrange(r-1).C=332(kcal/mol)Å(eu)-2
• q-water:IonanddipoleSolva/on.Large(-):.
• D-H..A:Hbonds.Medium,shortrange.
• A-A:VanderWaalsinterac/onWeak(-0.2km),butmany.Shortrange(r-6).
• Apolar-ApolarHydrophobicenergy,waterentropycontribu/on
Ehb = f (rHA,αALPHD)
Evw =Ar12
−Br6
Ehp =σ ⋅Area
⎟⎟⎠
⎞⎜⎜⎝
⎛−=−
mwq
solvmw r
CqEεε11
2
2
rqqCEel ε21=
H.H.:aquan1ta1vepicture• Mostdrugsareweakacidsorweakbases
• Itisnotallornothing,therearealwaysseveralspeciesatdifferentconcentra/ons
pKapHBHB
pKapHHAA
−=⎟⎟⎠
⎞⎜⎜⎝
⎛
+
−=⎟⎟⎠
⎞⎜⎜⎝
⎛ −
][][log
][][log
])log([
)log(
,[Acid][Base]][H
a
+
+
−=
−=
=
HpHKpKa
K
a
cpKpH a log21
21 −=
pH = 7+ 12 pKa + 1
2 logc
DrugSolu/ons(acidicandbasic)
BindingReac1on
• PL↔P+L;Kd=[P][L]/[PL];Ka=1/Kd• x=[PL];(P0-x)(L0-x)=x•Kd• x=½•(P0+L0+K0-((P0+L0+K0)2-4P0L0)½)• P0<<Kd:[PL]/[P]≈L0/Kd(50%inh.@L0=Kd)• [PL]<<P0(proteininexcess):[PL]/[L]≈P0/Kd,frac/on_drug_bound≈P0/(P0+Kd)