ert314 bioreactor system chapter 2: biological systems and media design

78
ERT314 BIOREACTOR SYSTEM CHAPTER 2: BIOLOGICAL SYSTEMS AND MEDIA DESIGN

Upload: silas-dean

Post on 29-Jan-2016

220 views

Category:

Documents


0 download

TRANSCRIPT

Page 1: ERT314 BIOREACTOR SYSTEM CHAPTER 2: BIOLOGICAL SYSTEMS AND MEDIA DESIGN

ERT314 BIOREACTOR SYSTEM

CHAPTER 2: BIOLOGICAL SYSTEMS AND MEDIA DESIGN

Page 2: ERT314 BIOREACTOR SYSTEM CHAPTER 2: BIOLOGICAL SYSTEMS AND MEDIA DESIGN
Page 3: ERT314 BIOREACTOR SYSTEM CHAPTER 2: BIOLOGICAL SYSTEMS AND MEDIA DESIGN

2.1 Introduction to Biological System

Page 4: ERT314 BIOREACTOR SYSTEM CHAPTER 2: BIOLOGICAL SYSTEMS AND MEDIA DESIGN
Page 5: ERT314 BIOREACTOR SYSTEM CHAPTER 2: BIOLOGICAL SYSTEMS AND MEDIA DESIGN
Page 6: ERT314 BIOREACTOR SYSTEM CHAPTER 2: BIOLOGICAL SYSTEMS AND MEDIA DESIGN
Page 7: ERT314 BIOREACTOR SYSTEM CHAPTER 2: BIOLOGICAL SYSTEMS AND MEDIA DESIGN
Page 8: ERT314 BIOREACTOR SYSTEM CHAPTER 2: BIOLOGICAL SYSTEMS AND MEDIA DESIGN
Page 9: ERT314 BIOREACTOR SYSTEM CHAPTER 2: BIOLOGICAL SYSTEMS AND MEDIA DESIGN
Page 10: ERT314 BIOREACTOR SYSTEM CHAPTER 2: BIOLOGICAL SYSTEMS AND MEDIA DESIGN
Page 11: ERT314 BIOREACTOR SYSTEM CHAPTER 2: BIOLOGICAL SYSTEMS AND MEDIA DESIGN
Page 12: ERT314 BIOREACTOR SYSTEM CHAPTER 2: BIOLOGICAL SYSTEMS AND MEDIA DESIGN

**rheology – the study of the flow of matters, especially in liquid state

Page 13: ERT314 BIOREACTOR SYSTEM CHAPTER 2: BIOLOGICAL SYSTEMS AND MEDIA DESIGN
Page 14: ERT314 BIOREACTOR SYSTEM CHAPTER 2: BIOLOGICAL SYSTEMS AND MEDIA DESIGN
Page 15: ERT314 BIOREACTOR SYSTEM CHAPTER 2: BIOLOGICAL SYSTEMS AND MEDIA DESIGN

Fermentation with fungi Fermentation with bacteria

Page 16: ERT314 BIOREACTOR SYSTEM CHAPTER 2: BIOLOGICAL SYSTEMS AND MEDIA DESIGN
Page 17: ERT314 BIOREACTOR SYSTEM CHAPTER 2: BIOLOGICAL SYSTEMS AND MEDIA DESIGN
Page 18: ERT314 BIOREACTOR SYSTEM CHAPTER 2: BIOLOGICAL SYSTEMS AND MEDIA DESIGN
Page 19: ERT314 BIOREACTOR SYSTEM CHAPTER 2: BIOLOGICAL SYSTEMS AND MEDIA DESIGN

Oxygen Demand

OTR = Oxygen transfer rate

OUR = Oxygen uptake rate

ionconcentratoxygen actualC

ionconcentratoxygen saturationC*

tcoefficien transfer massoxygen aK

)C*C(aKOTR

L

L

Page 20: ERT314 BIOREACTOR SYSTEM CHAPTER 2: BIOLOGICAL SYSTEMS AND MEDIA DESIGN
Page 21: ERT314 BIOREACTOR SYSTEM CHAPTER 2: BIOLOGICAL SYSTEMS AND MEDIA DESIGN
Page 22: ERT314 BIOREACTOR SYSTEM CHAPTER 2: BIOLOGICAL SYSTEMS AND MEDIA DESIGN
Page 23: ERT314 BIOREACTOR SYSTEM CHAPTER 2: BIOLOGICAL SYSTEMS AND MEDIA DESIGN

Most organisms reduce the pH during growth.

Page 24: ERT314 BIOREACTOR SYSTEM CHAPTER 2: BIOLOGICAL SYSTEMS AND MEDIA DESIGN
Page 25: ERT314 BIOREACTOR SYSTEM CHAPTER 2: BIOLOGICAL SYSTEMS AND MEDIA DESIGN
Page 26: ERT314 BIOREACTOR SYSTEM CHAPTER 2: BIOLOGICAL SYSTEMS AND MEDIA DESIGN
Page 27: ERT314 BIOREACTOR SYSTEM CHAPTER 2: BIOLOGICAL SYSTEMS AND MEDIA DESIGN
Page 28: ERT314 BIOREACTOR SYSTEM CHAPTER 2: BIOLOGICAL SYSTEMS AND MEDIA DESIGN
Page 29: ERT314 BIOREACTOR SYSTEM CHAPTER 2: BIOLOGICAL SYSTEMS AND MEDIA DESIGN
Page 30: ERT314 BIOREACTOR SYSTEM CHAPTER 2: BIOLOGICAL SYSTEMS AND MEDIA DESIGN
Page 31: ERT314 BIOREACTOR SYSTEM CHAPTER 2: BIOLOGICAL SYSTEMS AND MEDIA DESIGN
Page 32: ERT314 BIOREACTOR SYSTEM CHAPTER 2: BIOLOGICAL SYSTEMS AND MEDIA DESIGN
Page 33: ERT314 BIOREACTOR SYSTEM CHAPTER 2: BIOLOGICAL SYSTEMS AND MEDIA DESIGN

LET’S RECALL…

Page 34: ERT314 BIOREACTOR SYSTEM CHAPTER 2: BIOLOGICAL SYSTEMS AND MEDIA DESIGN
Page 35: ERT314 BIOREACTOR SYSTEM CHAPTER 2: BIOLOGICAL SYSTEMS AND MEDIA DESIGN
Page 36: ERT314 BIOREACTOR SYSTEM CHAPTER 2: BIOLOGICAL SYSTEMS AND MEDIA DESIGN

e.g: glycoprotein, oligosaccharides, enzyme etc.

E.Coli has a system where the capacity to use these precursors exceed the capasity of intermediary metabolism

Page 37: ERT314 BIOREACTOR SYSTEM CHAPTER 2: BIOLOGICAL SYSTEMS AND MEDIA DESIGN

2.2.1 Microbial ProcessesA. Design and Formulation of MediaShould consider:

Page 38: ERT314 BIOREACTOR SYSTEM CHAPTER 2: BIOLOGICAL SYSTEMS AND MEDIA DESIGN

e.g:

e.g: antagonism (Zn+ to Cu2+), synergism (toxic Cu2+ + Cd2+), stimulation (Ca2+ and Mn2+ depends on Zn2+)

Page 39: ERT314 BIOREACTOR SYSTEM CHAPTER 2: BIOLOGICAL SYSTEMS AND MEDIA DESIGN

requires higher pantothenic acid content in media

Addition of glycine betaine in media for L- amino acid production which has high glucose concentration, acts as an osmotic protectant.

Page 40: ERT314 BIOREACTOR SYSTEM CHAPTER 2: BIOLOGICAL SYSTEMS AND MEDIA DESIGN
Page 41: ERT314 BIOREACTOR SYSTEM CHAPTER 2: BIOLOGICAL SYSTEMS AND MEDIA DESIGN

(if more than 10 mM, no antibiotic is synthesized)

Page 42: ERT314 BIOREACTOR SYSTEM CHAPTER 2: BIOLOGICAL SYSTEMS AND MEDIA DESIGN

(easily altered)

Page 43: ERT314 BIOREACTOR SYSTEM CHAPTER 2: BIOLOGICAL SYSTEMS AND MEDIA DESIGN

causing

Whereas others, like dried yeast are generally uniform from batch to batch.

Page 44: ERT314 BIOREACTOR SYSTEM CHAPTER 2: BIOLOGICAL SYSTEMS AND MEDIA DESIGN

General equation for the stoichiometry of growth and product formation

Page 45: ERT314 BIOREACTOR SYSTEM CHAPTER 2: BIOLOGICAL SYSTEMS AND MEDIA DESIGN

Where yx/s, yp/s and yCO2/s are

= coefficients related to biomasss, product and CO2 formation

= expressed as C mole of biomass, product and CO2 per mole of carbon and energy source (substrate)1yyy s/2cos/ps/x

s

xs/xs/x Yy

s

ps/ps/p Yy

σi = carbon fraction of i (x,p,s)

Yx/s = g dry weight of biomass per g of substrate consumed

Yp/s = g dry weight of product per g of substrate consumed

Page 46: ERT314 BIOREACTOR SYSTEM CHAPTER 2: BIOLOGICAL SYSTEMS AND MEDIA DESIGN
Page 47: ERT314 BIOREACTOR SYSTEM CHAPTER 2: BIOLOGICAL SYSTEMS AND MEDIA DESIGN
Page 48: ERT314 BIOREACTOR SYSTEM CHAPTER 2: BIOLOGICAL SYSTEMS AND MEDIA DESIGN
Page 49: ERT314 BIOREACTOR SYSTEM CHAPTER 2: BIOLOGICAL SYSTEMS AND MEDIA DESIGN

Constraints: Low reactor rated and productivity Instability of cell lines presents problem not easy

to overcome Danger of microbial contamination Secondary metabolites is often retained in

biomass Plant cells are often shear sensitive In some cases, secondary compounds should be

removed rapidlyHow to overcome?

Page 50: ERT314 BIOREACTOR SYSTEM CHAPTER 2: BIOLOGICAL SYSTEMS AND MEDIA DESIGN
Page 51: ERT314 BIOREACTOR SYSTEM CHAPTER 2: BIOLOGICAL SYSTEMS AND MEDIA DESIGN
Page 52: ERT314 BIOREACTOR SYSTEM CHAPTER 2: BIOLOGICAL SYSTEMS AND MEDIA DESIGN
Page 53: ERT314 BIOREACTOR SYSTEM CHAPTER 2: BIOLOGICAL SYSTEMS AND MEDIA DESIGN
Page 54: ERT314 BIOREACTOR SYSTEM CHAPTER 2: BIOLOGICAL SYSTEMS AND MEDIA DESIGN
Page 55: ERT314 BIOREACTOR SYSTEM CHAPTER 2: BIOLOGICAL SYSTEMS AND MEDIA DESIGN
Page 56: ERT314 BIOREACTOR SYSTEM CHAPTER 2: BIOLOGICAL SYSTEMS AND MEDIA DESIGN
Page 57: ERT314 BIOREACTOR SYSTEM CHAPTER 2: BIOLOGICAL SYSTEMS AND MEDIA DESIGN
Page 58: ERT314 BIOREACTOR SYSTEM CHAPTER 2: BIOLOGICAL SYSTEMS AND MEDIA DESIGN
Page 59: ERT314 BIOREACTOR SYSTEM CHAPTER 2: BIOLOGICAL SYSTEMS AND MEDIA DESIGN
Page 60: ERT314 BIOREACTOR SYSTEM CHAPTER 2: BIOLOGICAL SYSTEMS AND MEDIA DESIGN
Page 61: ERT314 BIOREACTOR SYSTEM CHAPTER 2: BIOLOGICAL SYSTEMS AND MEDIA DESIGN
Page 62: ERT314 BIOREACTOR SYSTEM CHAPTER 2: BIOLOGICAL SYSTEMS AND MEDIA DESIGN
Page 63: ERT314 BIOREACTOR SYSTEM CHAPTER 2: BIOLOGICAL SYSTEMS AND MEDIA DESIGN
Page 64: ERT314 BIOREACTOR SYSTEM CHAPTER 2: BIOLOGICAL SYSTEMS AND MEDIA DESIGN
Page 65: ERT314 BIOREACTOR SYSTEM CHAPTER 2: BIOLOGICAL SYSTEMS AND MEDIA DESIGN

,

Page 66: ERT314 BIOREACTOR SYSTEM CHAPTER 2: BIOLOGICAL SYSTEMS AND MEDIA DESIGN

Some of the important products which are produced from animal cell cultures are :

(i)enzymes (asperagenase, collagenase, urokinase, pepsin, hyaluronidase, rennin, trypsm, tyrosin hydroxylase),

(ii) hormones (leutinizing hormone, follicle stimulating hormone, chorionic hormone and erythropoietin), (iii) vaccines (foot and mouth disease vaccine, vaccines for influenza, measles and mumps, rubella and rabies),

(iv) monoclonal antibodies etc.

Page 67: ERT314 BIOREACTOR SYSTEM CHAPTER 2: BIOLOGICAL SYSTEMS AND MEDIA DESIGN

Products Application Erythropoietins

Erythropoietin-a Anaemia resulting from cancer and chemothcraoy Erythropoietin-p Anaemia secondary to kindney disease

Human growth hormones hGH Human growth deficiency in children, renal cell carcinoma

Somatotropin Chronic renal insufficiency, Turners' syndrom Monoclonal antibodies (therapeutic)

Anti-lipopolysacharide Treatment of sepsis Murine anti-idiotype/human

B-cell lymphoma B-cell lymphoma Monoclonal antibodies (diagnostics)

Anti-fibrin 99 Blood clot 99 Tcm-FAb (breast) Blood cancer PR-356CYT-356-in-lll Prostate adinocarcinoma

Plasminogen activator Urokinase type plasminogen activator Acute myocardial infarction, acute stroke, pulmonary

embolism, deep vein thrombosis Tissue type plasminogen activator

Recombinant plasminogen activator

Vaccines HIV vaccines (gpl20) AIDS prophylaxis and treatment

Malaria vaccine Malaria prophylaxis Polio vaccines Poliomyelitis prophylaxis

Some products of medical use derived from animal cell cultures. Source: based on Feichter (1996).

Page 68: ERT314 BIOREACTOR SYSTEM CHAPTER 2: BIOLOGICAL SYSTEMS AND MEDIA DESIGN

Advantages of serum in culture medium are:

i) serum binds and neutralizes toxins,

(ii) serum contains a complete set of essential growth factors, hormones,

attachment and spreading factors, binding and transport proteins,

(iii) it contains the protease inhibitors,

(iv) it increases the buffering capacity,

(v) it provides trace elements.

Page 69: ERT314 BIOREACTOR SYSTEM CHAPTER 2: BIOLOGICAL SYSTEMS AND MEDIA DESIGN

Disadvantages of serum in culture medium are:(i) it is not chemically defined and therefore it’s composition varies a lot, (ii) it is sometimes source of contamination by viruses etc.(iii) it increases the difficulties and cost of down stream processing, (iv) it is the most expensive component of the culture medium.

THEREFORE,

Page 70: ERT314 BIOREACTOR SYSTEM CHAPTER 2: BIOLOGICAL SYSTEMS AND MEDIA DESIGN
Page 71: ERT314 BIOREACTOR SYSTEM CHAPTER 2: BIOLOGICAL SYSTEMS AND MEDIA DESIGN
Page 72: ERT314 BIOREACTOR SYSTEM CHAPTER 2: BIOLOGICAL SYSTEMS AND MEDIA DESIGN
Page 73: ERT314 BIOREACTOR SYSTEM CHAPTER 2: BIOLOGICAL SYSTEMS AND MEDIA DESIGN
Page 74: ERT314 BIOREACTOR SYSTEM CHAPTER 2: BIOLOGICAL SYSTEMS AND MEDIA DESIGN
Page 75: ERT314 BIOREACTOR SYSTEM CHAPTER 2: BIOLOGICAL SYSTEMS AND MEDIA DESIGN

(1) Immunisation of a mouse(2) Isolation of B cells from the spleen(3) Cultivation of myeloma cells(4) Fusion of myeloma and B cells

(5) Separation of cell lines(6) Screening of suitable cell lines(7)(a) in vitro or (b) in vivo multiplication

(8) Harvesting

Production of monoclonal antibody (briefly)

Page 76: ERT314 BIOREACTOR SYSTEM CHAPTER 2: BIOLOGICAL SYSTEMS AND MEDIA DESIGN
Page 77: ERT314 BIOREACTOR SYSTEM CHAPTER 2: BIOLOGICAL SYSTEMS AND MEDIA DESIGN
Page 78: ERT314 BIOREACTOR SYSTEM CHAPTER 2: BIOLOGICAL SYSTEMS AND MEDIA DESIGN

THANK YOU