estimating trophic levels and trophic magni cation factors ... · food chains rarely applies to...

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Estimating Trophic Levels and Trophic Magnication Factors Using Bayesian Inference Jostein Starrfelt,* Katrine Borgå,* ,Anders Ruus, and Eirik Fjeld Norwegian Institute for Water Research (NIVA), Gaustadalle ́ en 21, N-0349 Oslo, Norway ABSTRACT: Food web biomagnication is increasingly assessed by estimating tro- phic magnication factors (TMF) where solvent (often lipid) normalized contaminant concentration is regressed onto the trophic level, and TMFs are represented by the slope of the relationship. In TMF regressions, the uncertainty in the contaminant concentrations is appreciated, whereas the trophic levels are assumed independent and not associated with variability or uncertainty pertaining to e.g. quantication. In reality, the trophic levels may vary due to measurement error in stable isotopes of nitrogen (δ 15 N) of each sample, in δ 15 N in selected reference baseline trophic level, and in the enrichment factor of δ 15 N between two trophic levels (ΔN), which are all needed to calculate trophic levels. The present study used a Markov Chain Monte Carlo method, with knowledge about the food web structure, which resulted in a dramatic increase in the precision in the TMF estimates. This also lead to a better understanding of the uncertainties in bioaccumulation measures; instead of using point estimates of TMF, the uncertainty can be quantied (i.e., TMF >1, namely positive biomagnication, with an estimated X % probability). INTRODUCTION Recent reviews and studies have suggested the implementation of trophic relations in the assessment guidelines of contaminant accumulation. 1-4 This includes evaluating the bioaccumulation potential of contaminants by quantifying their magnication through diet, either by specic predator-prey relations (biomag- nication factor, BMF) or as an average factorial change from one trophic level to the next in a specied food web (trophic mag- nication factor,TMF; previously also referred to as Food Web Magnication Factor). Whereas the BMF is the ratio of contaminant concentration between predator and prey (BMF = C PREDATOR /C PREY ), the TMF is estimated by regressing the contaminant concentrations in representatives of a food web onto their relative trophic positions, and the TMF is the slope of the regression line. 3,5,6 Although the TMF is currently recognized as the most realistic quantitative measure of food web accumulation of contaminants, 1,4 several issues remain regarding scientic understanding, feasibility of test protocols, and thus regulatory acceptance. 7,8 One of the greater challenges is to obtain a better understanding of the variability in TMF estimates and whether this variability comes about through natural variation in relevant processes or uncertainties surrounding our knowledge of them, or if it is the result of measurement errors, poorly dened concepts, and statistical analyses. Despite this, the European Community Regulation on chemicals and their safe use (REACH) recently amended to Annex XIII that accumulation of chemicals from the diet (BMF) and in the food web (TMF) could be used in the weight of evidence assessment of the chemical as a contaminant of concern due to bioaccumulation (REACH, Annex XIII 9 ). The trophic level of a species reects its approximate feeding position in a food web, where primary producers (plants/algae) constitute the rst trophic level, followed by primary consumers (herbivore) on the second trophic level, secondary and tertiary consumers (carnivore) on the third and fourth trophic levels, and so on. However, the simple concept of unidirectional linear food chains rarely applies to natural ecosystems, where more complex network models more appropriately describe the food webs. 10 Thus, the feeding position of a species is not an integer trophic level (e.g., 2, 3, or 4) but rather a continuous descriptor of a trophic position (e.g., 2.1, 2.7, 3.9), which can easily be calculated using a dietary matrix of the food web. Traditionally, trophic position of a species has been evaluated by stomach content analysis, but over the past decades stable nitrogen isotope ratios (δ 15 N measured as the 15 N/ 14 N ratio compared to a standard) have been more commonly used to assess a relative trophic position of organisms. The heavier isotope 15 N is retained in the organism to a larger extent than 14 N, with a relative increase of 15 N over 14 N(δ 15 N) of 3-5per trophic level, depending on species comparison and the ecosystem. 11,12 The δ 15 N ratios thus provide a nondiscrete measure of the relative trophic positions along a continuum and have been utilized in ecotoxicology (either as δ 15 N or converted to trophic position) since the early 1990s. 3,5,6,13,14 In studies of biomagnication, measurements of δ 15 N and contaminants are reecting accumulation over time. As such, they are assumed to be good estimators of the average eco- logical (diet) and contaminant status of the respective species. Although there is increasing knowledge of ecological and analytical factors that aect the variance in the contaminants quantied, fewer ecotoxicological studies appreciate the unknowns and evaluate the uncertainty associated with Received: March 20, 2013 Revised: August 29, 2013 Accepted: September 11, 2013 Article pubs.acs.org/est © XXXX American Chemical Society A dx.doi.org/10.1021/es401231e | Environ. Sci. Technol. XXXX, XXX, XXX-XXX

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Page 1: Estimating Trophic Levels and Trophic Magni cation Factors ... · food chains rarely applies to natural ecosystems, where more complex network models more appropriately describe the

Estimating Trophic Levels and Trophic Magnification Factors UsingBayesian InferenceJostein Starrfelt,* Katrine Borgå,*,† Anders Ruus, and Eirik Fjeld

Norwegian Institute for Water Research (NIVA), Gaustadalleen 21, N-0349 Oslo, Norway

ABSTRACT: Food web biomagnification is increasingly assessed by estimating tro-phic magnification factors (TMF) where solvent (often lipid) normalized contaminantconcentration is regressed onto the trophic level, and TMFs are represented by theslope of the relationship. In TMF regressions, the uncertainty in the contaminantconcentrations is appreciated, whereas the trophic levels are assumed independent andnot associated with variability or uncertainty pertaining to e.g. quantification. In reality,the trophic levels may vary due to measurement error in stable isotopes of nitrogen(δ15N) of each sample, in δ15N in selected reference baseline trophic level, and in theenrichment factor of δ15N between two trophic levels (ΔN), which are all needed tocalculate trophic levels. The present study used a Markov Chain Monte Carlo method,with knowledge about the food web structure, which resulted in a dramatic increase inthe precision in the TMF estimates. This also lead to a better understanding of theuncertainties in bioaccumulation measures; instead of using point estimates of TMF,the uncertainty can be quantified (i.e., TMF >1, namely positive biomagnification, with an estimated X % probability).

■ INTRODUCTIONRecent reviews and studies have suggested the implementationof trophic relations in the assessment guidelines of contaminantaccumulation.1−4 This includes evaluating the bioaccumulationpotential of contaminants by quantifying their magnificationthrough diet, either by specific predator−prey relations (biomag-nification factor, BMF) or as an average factorial change from onetrophic level to the next in a specified food web (trophic mag-nification factor,TMF; previously also referred to as Food WebMagnification Factor). Whereas the BMF is the ratio ofcontaminant concentration between predator and prey (BMF =CPREDATOR/CPREY), the TMF is estimated by regressing thecontaminant concentrations in representatives of a food web ontotheir relative trophic positions, and the TMF is the slope of theregression line.3,5,6 Although the TMF is currently recognized asthe most realistic quantitative measure of food web accumulationof contaminants,1,4 several issues remain regarding scientificunderstanding, feasibility of test protocols, and thus regulatoryacceptance.7,8 One of the greater challenges is to obtain a betterunderstanding of the variability in TMF estimates and whether thisvariability comes about through natural variation in relevantprocesses or uncertainties surrounding our knowledge of them, orif it is the result of measurement errors, poorly defined concepts,and statistical analyses. Despite this, the European CommunityRegulation on chemicals and their safe use (REACH) recentlyamended to Annex XIII that accumulation of chemicals from thediet (BMF) and in the food web (TMF) could be used in theweight of evidence assessment of the chemical as a contaminant ofconcern due to bioaccumulation (REACH, Annex XIII 9).The trophic level of a species reflects its approximate feeding

position in a food web, where primary producers (plants/algae)constitute the first trophic level, followed by primary consumers(herbivore) on the second trophic level, secondary and tertiary

consumers (carnivore) on the third and fourth trophic levels,and so on. However, the simple concept of unidirectional linearfood chains rarely applies to natural ecosystems, where morecomplex network models more appropriately describe the foodwebs.10 Thus, the feeding position of a species is not an integertrophic level (e.g., 2, 3, or 4) but rather a continuous descriptorof a trophic position (e.g., 2.1, 2.7, 3.9), which can easily becalculated using a dietary matrix of the food web. Traditionally,trophic position of a species has been evaluated by stomachcontent analysis, but over the past decades stable nitrogenisotope ratios (δ15N measured as the15N/14N ratio compared toa standard) have been more commonly used to assess a relativetrophic position of organisms. The heavier isotope 15N isretained in the organism to a larger extent than 14N, with arelative increase of 15N over 14N (δ15N) of 3−5‰ per trophiclevel, depending on species comparison and the ecosystem.11,12

The δ15N ratios thus provide a nondiscrete measure of therelative trophic positions along a continuum and have beenutilized in ecotoxicology (either as δ15N or converted to trophicposition) since the early 1990s.3,5,6,13,14

In studies of biomagnification, measurements of δ15N andcontaminants are reflecting accumulation over time. As such,they are assumed to be good estimators of the average eco-logical (diet) and contaminant status of the respective species.Although there is increasing knowledge of ecological andanalytical factors that affect the variance in the contaminantsquantified, fewer ecotoxicological studies appreciate theunknowns and evaluate the uncertainty associated with

Received: March 20, 2013Revised: August 29, 2013Accepted: September 11, 2013

Article

pubs.acs.org/est

© XXXX American Chemical Society A dx.doi.org/10.1021/es401231e | Environ. Sci. Technol. XXXX, XXX, XXX−XXX

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measured δ15N values and the estimated trophic positions.3 Inaddition to a switch in diet that affects the δ15N, the isotopicratio may vary within a species depending on the productivityof the ecosystem; e.g., in phytoplankton and zooplankton, theδ15N varies up to 5‰ depending on bloom stage.15 Thisdifference corresponds to a difference of more than one trophiclevel, using the scaling factor relating relative δ15N measure-ments with trophic levels (ΔN) 12 in the range 3−5‰. Unlessother information is available, a value of 3.4‰ is commonlyapplied in ecotoxicological studies for the estimation of trophicposition and TMF.3,16 Last, there are analytical considerationsthat affect the quantified δ15N, such as extraction method andremoval of lipid and carbonate or not.17 Using measurements ofthe isotope ratios to estimate the trophic position of individuals(as opposed to estimating the trophic position of a species) willmake sure that some of the natural variability in diets is takeninto account, and this will directly affect the TMF, especiallythe precision. On the other hand, it is still a model relating theindividual isotope levels to trophic positions. To our knowl-edge, no examination of the effect of variability in eitherenrichment factor (ΔN), baseline δ15N, or individual sampleδ15N on the estimated trophic level has been performed.Fortunately, ecotoxicology and risk assessment are developingin the direction of appreciating and quantifying uncertainties,including an increased focus on probabilistic risk assessment,e.g., refs 18 and 19. Thus, a focus on assessing uncertainty andvariability in bioaccumulation models, e.g., refs 20 and 21, isneeded for reducing uncertainty in TMF estimates whileincorporating variability in these factors. However, most TMFstudies lack an appreciation of this variability, i.e., most TMFsare calculated only using traditional regression methods thatonly take into account (or try to minimize) error in themeasured values of contaminant concentrations. Some simplemethods have been performed, e.g., removing one of themeasured compartments from TMF calculation, as in refs 5, 22,and 23. Ways forward should include direct quantification andtreatment of the trophic level variability associated with TMFestimates.In the present study, we utilized both measurements of δ15N

as well as knowledge about the structure of a food web (in theform of a binary (0/1) dietary matrix) to predict δ15N values(and hence trophic levels). The model also estimated param-eters used in relating δ15N values to trophic levels (baseline/reference δ15N and enrichment factor ΔN), and the errorvariance of δ15N. Together the estimated parameters use thelinks between dietary information and isotope enrichment togenerate probability distributions of trophic levels, and these inturn are used to generate probability distribution of TMFs.

■ THEORY AND METHODSTrophic magnification factors are assumed to reflect themagnitude of contaminant accumulation in a food web andare defined as the estimated slope of the solvent (often lipid)normalized contaminant concentrations (Clipid) on trophic level(TL; eq 1):

ε= + · +

=

C a blog ( ) TL

TMF 10b10 lipid

(1)

Regressions like these are often performed by traditionalleast-squares regression or other maximum likelihood measuresattempting to minimize the squared error (ε); i.e., the bestestimates of TMF are achieved through minimizing the

(squared) difference between predicted and observed (log)contaminant concentrations. Implicitly, this means that allvariability in trophic levels (including measurement errors andestimates of isotope enrichment factors etc.) are ignored; ormore correctly, trophic levels are seen as independent. Thoughmethods for inclusion of errors or variability in the independentvariable (so-called errors-in-variables models, e.g., Demingregression) exist, to our knowledge no such examples exist forTMF estimation. Thus, TMFs as measures of contaminantbiomagnification do not include any treatment of the potentialvariability of trophic levels among individuals or samples of thesame species or population.

Trophic Level Estimation from Food Webs andIsotope Ratio Measurements. Estimation of trophic levelsusing δ15N is performed using eq 2:

δ δ=

−Δ

+N

TLN N

TL

consumer

15consumer

15primaryconsumer

primaryconsumer (2)

where TLconsumer is the trophic level of an individual with ameasured δ15Nconsumer. δ15Nprimaryconsumer is the isotope ratiomeasured for a primary consumer assumed to occupy a trophiclevel of TLprimaryconsumer. Isotope enrichment factors (ΔN) of3.4‰ are commonly used.3,16

Describing the community using a food web dietary matrixyields another way to estimate trophic levels. Effective trophiclevels can be defined as the weighted average length of allenergetic pathways originating from outside a system to aspecific compartment. For a secondary consumer feeding ononly one primary consumer, this corresponds to an effectivetrophic level of 3 (abiotic environment (TL 0) → primaryproducer (TL 1) → primary consumer (TL 2) → secondaryconsumer (TL 3)). With mixed diets, one calculates a weightedaverage for each compartment in the food web matrix, e.g., ref24 and 25. For each species or population i with a dietconsisting of G other species according to the fraction Fij,effective trophic level is then calculated as

∑= +∈

FTL 1 TLij G

ij j(3)

Or equivalently in matrix notation for the vector of trophiclevels:

∑= − −TL I F( ) 1(4)

where I is the identity matrix and F is the dietary matrixdescribing the food web.By rearranging eq 2, we can use trophic levels from a dietary

matrix to predict isotope ratios:

δ δ= − Δ +NN (TL TL ) Ni i j j15 15

(5)

A Bayesian Model of δ15N Ratios Inferred from FoodWebs. In Bayesian statistics, the goal is to arrive atdistributions of parameters that reflect our degree of belief intheir values. The main ingredient of Bayesian analysis is Bayesrule:

θθ θ

| =|

p yp y p

p y( )

( ) ( )( ) (6)

where θ represents a set of estimated parameters and yrepresents data or observations. Our main goal is to get an

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estimate of the distribution on the left-hand side (called aposterior distribution), a probability distribution of (a set of)parameters, given our data. In a simple case, it could be theestimate of a regression coefficient, given a sample, and thedistribution (p(θ|y)) could be described in terms of percentilesand a visual representation of the posterior distribution.The Bayes rule gives us a way to calculate such posteriordistributions since they are (by definition) the productof the likelihood (the probability of the observations, giventhe parameters, (p(y|θ)) and a prior distribution (p(θ)). Alikelihood is a formal measure of the similarity betweenpredictions and observations, most often directly related tosums of squares and a prior distribution is reflecting our currentknowledge about the probability of the parameters. In the caseof estimating a regression coefficient (like the TMF), we mightfor instance have prior knowledge (from other studies orcommon sense) about its expected distribution. In the case ofestimating the regression coefficient b in eq 1, we could form aprior distribution, which would encapsulate our currentknowledge about the system, say with a mean of 2 and agiven standard deviation, if such priors were warranted based onearlier analyses. In other cases, we have little information about theexpected value and choose uninformative priors, distributions thatare uniform or in other ways express vague information about aparameter. In most cases, the likelihood, p(y|θ), is a combinationof a mathematical model that yields predictions and a model forthe distribution of the errors, i.e., the expected deviances betweenobserved and predicted values. The denominator in eq 6 gives theprobability of the observations. This is independent of theparameters of the model (θ) and is therefore often reduced to anunknown constant, yielding

θ θ θ| ∝ |p y p y p( ) ( ) ( ) (7)

In other words, since p(y) is constant, we can estimate theposterior distribution, p(θ|y), as proportional to the priordistribution, p(θ), multiplied by the likelihood p(y|θ).

A model (Figure 1) was set up using eqs 4 and 5 to predictthe population means of δ15N ratios in the food webcompartments, by estimating a set of parameters throughBayesian inference. The parameters to be estimated were thenonzero entries in the dietary matrix (F in eq 3), the isotopeenrichment factor (ΔN in eq 5), and the population mean δ15Nfor one of the diet matrix compartments (Daphnia, as primaryconsumer in eq 2). All of these parameters can be combinedwith an error variance (σ2) estimated (common for allpopulations) to predict δ15N in an individual (technically, thiserror variance is a combination of variance in the populationand observational error). The data points of δ15N measure-ments (yij, i = 1, ..., nj, j = 1, ..., J) are modeled as independentlynormally distributed within each population (j) with means μjand variance σ2. The group or population means are assumed tobe related through the food web, according to eq 5.Letting θ denote the parameters of the dietary matrix, μD the

estimated population mean level of δ15N for Daphnia, σ2 thevariance of the δ15N distributions (common for allpopulations), and ΔN the isotope enrichment factor, we willexplore the posterior distribution

θ μ σ

θ δ σ θ δ σ

Δ |

∝ | Δ Δ

p N y

p y N p N

( , , , )

( , N , , ) ( , N , , )D

D D

2

15 2 15 2(8)

where the likelihood is defined by

∏ ∏

θ μ σ θ μ σ

πσ

| Δ = | Δ

σ

= =

=

−∑ −=

⎜ ⎟⎛⎝

⎞⎠

p y N p y N( , , , ) ( , , , )

12

e

Dj

J

i

n

ij D

j

J n y

2

1 1

2

12

/2(

( )

2)

j

j inj

ij j12

2

(9)

In eq 9, yi,j are observed isotope ratios in sample i belongingto population j, and μj are the mean isotope ratios for thepopulation j, given by

Figure 1. Conceptual diagram of the Bayesian food web isotope level estimator. Boxes are estimated parameters. Rounded corners imply calculated values,and circles represent observations. The diets of all populations (except for microzooplankton) are estimated. These diets are used to calculate trophic levelsfor all compartments, using eq 4. Together with independently estimated μD and the isotope enrichment factor (ΔN), these values are used to calculateisotope population means for all compartments, using eq 5. With an estimated error variance, these can be used to predict the observed δ15N values. For theestimation of these parameters, the only information used is the observed δ15N values as well as the structure of the food web.

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μ θ μ θ θ μ= Δ = − Δ +f N N( , , ) (TL ( ) TL ( ))j D j D D

(10)

where TLj is the trophic level calculated using the food webmatrix as in eq 4.MCMC Implementation and Prior Probabilities. To

explore the posterior values (i.e., arriving at a distribution forthe parameters in eq 8), we used standard Markov ChainMonte Carlo (MCMC) simulations where the proposal valueswere generated by a normal distribution around the currentvalue.26 The proposed values were accepted using theMetropolis Hastings algorithm. The step size was in an initialrun found so as to achieve well mixed chains with an acceptancerate around 0.23 and was fixed for the main analysis.26 Wesimulated 10 independent chains for 100 000 iterations eachand used the last 25 000 iterations as parameter estimates andfor posterior predictive sampling. To evaluate the effect ofincluding knowledge about the structure of the food web, wealso performed a Bayesian analysis of the regression in eq 1through Gibbs sampling, also with 10 chains for 100 000iterations. This essentially copies the standard methods forTMF estimation,3 which was also applied for this specific foodweb,23 by using a Bayesian estimation of the TMF values, whileassuming the isotope enrichment factors and all other

measurements to be fixed. The analysis was implemented inMatlab.27

Dirichlet distributions with concentration parameter α = 1were used as priors for the diets; essentially this entails auniform distribution over all possible combinations. Gaussianpriors were used for the isotope enrichment factor (ΔN) andmean δ15N for Daphnia (μD) with means and standarddeviations of (0.0035, 3 × 10−4) and (8, 1) respectively. Forthe error variance (σ2), a uniform prior with range [0...10] wasapplied.

Posterior Predictive Sampling and TMFs Estimation.The probability distributions of the estimated parameters canbe used for posterior predictive sampling, essentially generatingdistributions of δ15N values for individual samples of thedifferent compartments in the food web. For each of the δ15Ndata, we also have contaminant data, and by resampling δ15Nvalues from the estimated distributions of δ15N we can therebyquantify the uncertainty in trophic magnification factors arisingfrom the variability in the trophic levels assigned to theanalyzed individuals. We did this by randomly drawing nnumber of the last 25 000 iterations, using the parameter valuesat that point in the chain to draw simulated δ15N values for theindividual samples (see data sources below). Using thesesimulated δ15N values together with ΔN, we then performed a

Figure 2. Estimated parameters of the food web from the Bayesian analysis. All priors used were uninformative Dirichlet distributions (i.e., uniformin n-dimensional space). The only previous knowledge included in the estimation was which entries in the matrix were nonzero. Note that thedistributions are highly correlated, also across compartments. X axes are from 0 to 1, and Y is scaled to highest probability for the 51 bins used togenerate the histograms.

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regression to get n number of estimates of TMFs for selectedcompounds. These estimates were pooled to generate a prob-ability distribution of TMFs given the structure of the foodweb, the prior distributions of the parameters, and observedlevels of contaminant and δ15N.Data Sources and Food Web Structure. Empirical data

used in the present study were previously presented,23,28 anddetails on contaminant levels, sampling, and analysis can befound therein. In brief, representatives of the pelagic food webof Lake Mjøsa, Norway, were collected midlake near Helgøya inSeptember−October 2010. The food web representativesincluded the top predator piscivorous brown trout (Salmotrutta), the zooplanktivorour fish smelt (Osmerus eperlanus),and vendace (Coregonus albula). The invertebrate representa-tives included Mysis relicta and zooplankton (Daphina galeataand Limnocalanus macrurus). The samples were analyzed forlipids and legacy persistent organic pollutants includingpolychlorinated biphenyls (PCBs), polybrominated diphenylethers (PBDEs), and dichlorodiphenyldichloroethylene (p,p′-DDE).28 δ15N and cyclic volatile methyl siloxanes (deca-methylcyclopentasiloxane, D5) were analyzed as described inBorga et al.23On the basis of previous ecological studies of Lake Mjøsa, or

similar lakes, a binary dietary matrix representing who eatswhom (but not the proportions) for each food webrepresentative was developed. All entries in the dietary matrixwere estimated; however, which entries were nonzero wasbased on earlier studies and constitutes all the knowledge aboutthe food web included in the model. In addition to the foodweb compartments described above that were analyzed for con-taminants, lipids and δ15N, particulate organic matter (POM),microzooplankton, small size group of vendace (<15 cm), andsmelt (<15 cm) were included in the binary dietary matrix.

■ RESULTS AND DISCUSSION

Our analysis consists of two major parts: The first part uses theassumed structure of the food web (i.e., who eats whom), therelations in eq 4 and 5 and observations of isotope levels toestimate the relevant parameters (diets, enrichment factor,

isotope ratios for Daphnia, and an error term) of our model.The second part uses these estimates to generate ranges oflikely isotope ratios. These generated isotope ratios (δ15N),baseline isotope ratios for Daphnia (μD), and enrichment factor(ΔN) are then used to calculate trophic levels and theprobability distributions of TMFs. In essence, we are estimatinga mean isotope ratio for each compartment and then simulatinglikely δ15N measurements given our model and combiningthese simulated isotope ratios with observed contaminantconcentrations to estimate TMFs.

Figure 3. Isotope enrichment factor (ΔN). Prior (line) and posterior(histogram) probability distribution of the ΔN. The posteriordistribution has 2.5, 50, and 97.5 percentiles of 2.77‰, 3.29‰, and3.97‰.

Table 1. Distributions of Trophic Magnification Factors(TMF; 2500 Draws from Each Chain = 25 000 SimulatedTMFs) for Simple Bayesian Regression (Simple) andPosterior Predictive Simulation of the Full Model (Full)a

TMF model 2.5% median 97.5%

PCB-153 full 3.54 4.67 6.20simple 3.06 4.91 7.77

PCB-180 full 4.05 5.56 7.62simple 3.65 6.01 9.85

P,P′,DDE full 2.99 3.8 4.87simple 2.55 3.89 5.92

BDE-47 full 4.11 5.58 7.68simple 3.48 5.83 9.93

BDE-99 full 1.82 2.32 3.04simple 1.09 2.44 5.4

D5 full 1.66 2.03 2.45simple 1.09 2.29 4.75

aThe TMFs were determined for lipid normalized concentrations. Thesimple model is identical to the regression model presented in theempirical study,22 adapted to a Bayesian framework.

Figure 4. Posterior predictive simulation of trophic levels for thebiological compartments. Lines span from 2.5 to 97.5 percentiles, barsat 25 and 75% with diamonds indicating the median value. The trophiclevels were simulated by selecting sets of parameters from theconverged chains (i.e., diets, μD for Daphnia, ΔN, and varianceestimate of δ15N estimates). The δ15N means were then calculated forall compartments, and a deviation was added using the varianceestimation. These “simulated” δ15N values were then back calculatedto trophic levels using eq 2. Note that these estimates will becorrelated; i.e., a higher trophic level for trout is accompanied byhigher trophic levels for the species in its diet. The independentlyestimated isotope level for Daphnia used to fix the relationship in eq 5had a median value of 8.107 with a 95% confidence interval from 7.229to 9.035.

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The MCMC algorithm applied was successful in estimatingthe posterior distribution of diets, enrichment factor, meanisotope ratio for Daphnia, and the error variance of the model.The chains converged quickly and arrived at an acceptance rateof 0.189 during the last 25 000 iterations of all 10 chains. Theposterior dietary matrix (Figure 2) shows that there is quite alarge range of uncertainty with regard to the feeding relations insome compartments (especially the small smelt and vendaceand brown trout), whereas for other populations a narrowerposterior was found. As δ15N values were not available for smallsmelt and vendace (only large fish), this may explain the larger

uncertainty for these compartments in the posterior dietarymatrix, as well as for trout that assumed to have small smelt andsmall vendace as their main prey.

Enrichment Factor, Δδ15N. The posterior for the isotopeenrichment factor (ΔN) was not very different from the prior(Figure 3), meaning that our model and observations could notadequately narrow down the distribution, thus underlining theimportance of the variability in this scaling factor. For futureanalyses, we would recommend an even wider prior range forthe enrichment factor since the analysis did not narrow downthe distribution substantially. The 95% credibility interval25 for

Figure 5. Distributions of trophic magnification factors (TMF; 2500 draws from each chain = 25 000 simulated TMFs) for simple Bayesianregression (gray lines) and posterior predictive simulation of the full model (black). See Table 1 for median and 95% confidence intervals.

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the enrichment factor spanned from 2.77 to 3.97‰ with amedian of 3.29‰, lower than the commonly used value of3.4‰. This suggests a lower enrichment for the Mjøsa foodweb than previously had been assumed.29 In general, therelationship between isotope enrichment factor and TMF issuch that an increase in the enrichment factor will make theestimated TMF tend away from 1. This means that assuming alow enrichment factor will increase the risk of type II error, i.e.,increase the likelihood of classifying a magnifying compound asnonmagnifying by “pushing” the estimate toward 1. Such issueswill be even more problematic in a frequentist approach, wherethe main questions asked is “how probable are these con-taminant observations in the food web given no magnification”where nonmagnifying compounds are defined as chemicalswhich do not exhibit a TMF significantly above 1.The estimated ΔN in our model is generally lower than the

assumed value of 3.4‰ used in ref 23. The probability ofthe enrichment factor being lower than 3.4‰ is 0.64, and theprobability of the factor being lower than 3.0‰ is alsosubstantial (0.13). This is one of the major factors that led toour estimates of TMF being slightly lower (i.e., closer to 1) forall analyzed compounds (Table 1) compared to the earlieranalysis23 and in the simple Bayesian regression.The enrichment factor ΔN is obviously associated with

variability across time, space, and trophic level and may bemore appropriate on some specific trophic steps than others.This is in contrast to previous studies that report one similarenrichment factor throughout the food web,30 except for birds.Experimental studies on cormorants indicate that the ΔN froma bird diet to muscle tissue is 2.4‰,31 which is less than therecommended 3.4‰. A Bayesian approach (or more generallya distributional approach) to performing analyses with ΔN hasthe possibility of including this uncertainty and quantifying it.Our model explicitly takes this uncertainty in ΔN into accountby using a distribution of the enrichment factor derived fromour observations and the structure of the food web. Extendingthis approach to include distributions of ΔN for separategroups could be valuable.Predicted Trophic Level and TMF. One of the benefits of

a Bayesian approach to parameter estimation is that instead ofpoint estimates of parameters or regression coefficients, wholeprobability distributions are generated. These parameterdistributions can then be used to generate more realisticpredictions, since the natural variability in parameters, such asthe enrichment factor, will be included in the estimate and thegeneration of the prediction distributions. Figure 4 shows thepredicted trophic levels of the populations in the food webwhen taking the uncertainty in diets, enrichment factor, anderror variance into account. By using these simulated trophiclevels, a narrower estimate of TMFs for all compounds isachieved, when compared to a standard Bayesian regressionanalysis of the observations alone (Table 1, Figure 5), despitethe considerable uncertainty in some of the parameters(e.g., the diets). Using such Bayesian approaches can also leadto a better understanding of the uncertainties in bioaccumula-tion measures. Instead of using point estimates of TMF, aspreviously done in most TMF studies, e.g., refs 5, 14, and 22,we can quantify the uncertainty. For our model here, forinstance, we can quantify the total uncertainty; given our modeland parameter estimates, there is an 89% probability that theTMF for PCB-153 is greater than 2. For the cyclic siloxane D5,there is a 56% probability that the TMF is greater than 2.

In summary, we have utilized Bayesian inference on themodel relating relative isotope levels and trophic levels togetherwith the structure of the food web to reduce the uncertainty inTMF estimates. With relatively few data points, the methodmanages to estimate the diets of the species in the system, anduses these diets to restrict the plausible values of trophicposition of the species, thereby also reducing the uncertaintysurrounding TMF estimates. Such reduction of uncertainty inthe TMF estimate is especially of interest in cases where TMFis close to 1, i.e., where there is a question of biomagnification.

■ AUTHOR INFORMATIONCorresponding Authors*Phone: +47 22185100. Fax: +47 22185200. E-mail: [email protected].*Phone: +47 22855600. Fax: +47 22854726. E-mail: [email protected] Address†Department of Biosciences, University of Oslo, P.O. Box 1066Blindern, 0316 Oslo, Norway

NotesThe authors declare no competing financial interest.

■ ACKNOWLEDGMENTSThe present study was part of the ECO15 project funded bythe European Chemical Industry Council (CEFIC).

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