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Arnab Sen Arnab Sen PhD PhD IVRI, Mukteswar IVRI, Mukteswar

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Page 1: EU-India S&T Cooperation - Arnab Sen PhD IVRI, Mukteswar · 2019-11-05 · Changes in epidemiology (changes in distribution, disease incidence, ... Peste Des Petits Ruminants (PPR)

Arnab SenArnab SenPhDPhD

IVRI, MukteswarIVRI, Mukteswar

Page 2: EU-India S&T Cooperation - Arnab Sen PhD IVRI, Mukteswar · 2019-11-05 · Changes in epidemiology (changes in distribution, disease incidence, ... Peste Des Petits Ruminants (PPR)

Animal health & Human health

complimentary to each other

Well-being of animal population

An important ingredient & determinant of human health

Page 3: EU-India S&T Cooperation - Arnab Sen PhD IVRI, Mukteswar · 2019-11-05 · Changes in epidemiology (changes in distribution, disease incidence, ... Peste Des Petits Ruminants (PPR)

� Pathogens long present but not previously identified

� Recognition of apparently new microbes

� Changes in epidemiology (changes in distribution, disease

incidence, virulence of microbial strains, microbial resistance to drugs) of old pathogens

� New disease—disease interactions and

� Spread (to human/animals) of organisms never

previously known to be human/animal pathogens

Page 4: EU-India S&T Cooperation - Arnab Sen PhD IVRI, Mukteswar · 2019-11-05 · Changes in epidemiology (changes in distribution, disease incidence, ... Peste Des Petits Ruminants (PPR)

� Economically important disease of Small ruminants (Goat and Sheep)

� Caused by PPR virus:

- Negative sense, Non-segmented, Single stranded RNA

Members:

(i) Measles virus (Type species)

(ii) PPR virus

(iii) Rinderpest virus

(iv) Canine distemper virus

(v) Phocine distemper virus

(vi) Dolphin and Porpoise (Cetacean) Morbilliviruses

Taxonomy:

Order: Mononegavirales

Family: Paramyxoviridae

Subfamily: Paramyxovirinae

Genus: Morbillivirus

Peste Des Petits Ruminants (PPR)

Page 5: EU-India S&T Cooperation - Arnab Sen PhD IVRI, Mukteswar · 2019-11-05 · Changes in epidemiology (changes in distribution, disease incidence, ... Peste Des Petits Ruminants (PPR)

� Receptor based studies on PPR virus:

� Understanding viral choice for an epithelial (CD46) and a lymphocyte receptor (CD150)

� Distribution of PPR antigen in various components of blood in vaccinated and infected animals:

� Virus sequestration and localization as key factors to generation of variant

� in vivo cytokine expression profile in vaccinated and infected animals:

� Role of soluble factors in immune response

Page 6: EU-India S&T Cooperation - Arnab Sen PhD IVRI, Mukteswar · 2019-11-05 · Changes in epidemiology (changes in distribution, disease incidence, ... Peste Des Petits Ruminants (PPR)

1. PCR amplification of SLAM* gene from mitogen stimulated caprine PBMC

2. Cloning and subsequent sequencing of Caprine SLAM gene

3. Development of a stable Vero cell line(Vero/SLAM) constitutivelyexpressing caprine SLAM* along with CD46

4. Comparing susceptibility of PPRV to Vero/SLAM with Normal Vero cells

* Signaling lymphocyte activation molecule (CD150)

Page 7: EU-India S&T Cooperation - Arnab Sen PhD IVRI, Mukteswar · 2019-11-05 · Changes in epidemiology (changes in distribution, disease incidence, ... Peste Des Petits Ruminants (PPR)

PCR amplified SLAM genesfrom PBMC’S

1 kbp 1 kbp

Sheep Goat Buffalo Cattle

Size of amplicon is 1017 bp

Page 8: EU-India S&T Cooperation - Arnab Sen PhD IVRI, Mukteswar · 2019-11-05 · Changes in epidemiology (changes in distribution, disease incidence, ... Peste Des Petits Ruminants (PPR)

Endotoxin free recombinant pTarget Vector containing caprine SLAM gene was isolated.

Vero cells were transfected with the endotoxin free recombinant vector keeping control wells (without transfection).

Cultured at 37ºC for 48h.

The cells (including control wells) were subjected to G418 selection pressure .

The cells were monitored everyday.

On 8th day after selection,all the cells in control wells died;whereas there were selected few live cell in transfected wells scattered throughout the plate.

Page 9: EU-India S&T Cooperation - Arnab Sen PhD IVRI, Mukteswar · 2019-11-05 · Changes in epidemiology (changes in distribution, disease incidence, ... Peste Des Petits Ruminants (PPR)

Determining integration of caprine SLAM gene into the genome of Vero/SLAM cells

1 2 3 4

Lane 1: PCR amplicon from Vero/SLAM genomic DNA

Lane 2: PCR amplicon from Vero genomic DNA

Lane 3: Positive control (pTARGET cloned plasmid)

Lane 4: 100bp plus DNA ladder

1017bp

Page 10: EU-India S&T Cooperation - Arnab Sen PhD IVRI, Mukteswar · 2019-11-05 · Changes in epidemiology (changes in distribution, disease incidence, ... Peste Des Petits Ruminants (PPR)

Determining expressionof caprine SLAM in Vero/SLAM cells

SLAM/BT/for&rev

1 2 3 4 5 6

Lane-1: PCR amplicons from Vero/SLAM cell line using SLAM/BT/(for&rev) primers

Lane-2: PCR amplicons from Vero cell line using SLAM/BT/(for&rev) primers

Lane-3: Positive control (PCR amplification of pTARGET cloned plasmid with SLAM/BT/ (for & rev)primers

Lane-4: GeneRulerTM 100bp DNA Ladder Plus (MBI, Fermentas, Cat#SM0321)

Lane-5: PCR amplicons from Vero/SLAM cell line using BA1&BA2 primers

Lane-6: PCR amplicons from Vero cell line using BA1&BA2 primers.

1017bp

Page 11: EU-India S&T Cooperation - Arnab Sen PhD IVRI, Mukteswar · 2019-11-05 · Changes in epidemiology (changes in distribution, disease incidence, ... Peste Des Petits Ruminants (PPR)

Comparative viral load, measured by sandwich ELISA at various time intervals in Vero/SLAM and Vero cell lines infected with PPR vaccine virus

0.0

0.1

0.1

0.2

0.2

0.3

0.3

0.4

12 h 18 h 24 h 48 h 72 h 96 h 120 h 144 h

Time intervals

O.D

. at 4

92

nm

Vero/SLAM Vero

0.0

0.1

0.1

0.2

0.2

0.3

0.3

0.4

0.4

0.5

12 h 18 h 24 h 48 h 72 h 96 h 120 h 144 h

Time intervals

O.D

. at 4

92

nm

Vero/SLAM Vero

Intracellular virusCell Supernatant

Page 12: EU-India S&T Cooperation - Arnab Sen PhD IVRI, Mukteswar · 2019-11-05 · Changes in epidemiology (changes in distribution, disease incidence, ... Peste Des Petits Ruminants (PPR)

One step Growth curve of PPR virus Extracellular Fl uid

0.01.02.03.04.05.06.07.08.0

2hr. 4hr 8hr 16hr 24hr 48hr 72hr 96hr

Hrs post infection

Vir

us ti

tre/

ml(l

og10

)

vero V/ SLAM B95a vero TS

Page 13: EU-India S&T Cooperation - Arnab Sen PhD IVRI, Mukteswar · 2019-11-05 · Changes in epidemiology (changes in distribution, disease incidence, ... Peste Des Petits Ruminants (PPR)

� Due to error-prone nature of RNA genome, Morbilliviruses have a high mutation rate and

can easily adapt to use an alternate receptor(s) in vitro

� Since SLAM-positive cells are a minor population in the body, it may be possible that

PPR virus has evolved (or evolving?) using an alternate receptor for entry into the host

� “From this work it has been possible to clearly demonstrate that SLAM is

definitely a high affinity receptor for the PPR vaccine virus. A novel and stable

transfected Vero cell line displaying SLAM on its surface has been developed.

Possibility of existence of other molecule(s) acting as principle cellular

receptor(s)/co-receptor(s) cannot be ignored.”

Page 14: EU-India S&T Cooperation - Arnab Sen PhD IVRI, Mukteswar · 2019-11-05 · Changes in epidemiology (changes in distribution, disease incidence, ... Peste Des Petits Ruminants (PPR)

Detection of PPRV antigen in serum

� Isotyping of serum samples to assess the

nature of immune response

� Detection of PPR viral antigen in various

components of blood

� Evaluation of cytokine response in PPR infected

and vaccinated animals

� Evaluation of apoptosis in PBMC’s from PPR

infected goats

Page 15: EU-India S&T Cooperation - Arnab Sen PhD IVRI, Mukteswar · 2019-11-05 · Changes in epidemiology (changes in distribution, disease incidence, ... Peste Des Petits Ruminants (PPR)

1 Serum Samples analyzed 358 (275 goats+83 sheep)

2 Serum samples found positive for PPRV antigen

222 (62.01%- Overall

(70.54% goats +33.73% sheep)

3 Serum samples isotyped 140 (random)

4 Serum samples positive for IgG 120 (85%)

5 Serum samples positive for IgM 20 (15%)

PPRV detection in serum

050

100150200250300350400

Serumsamplesanalysed

Serumsamples

foundpositive

Serumsamples

forisotyping

Serumsamplespositivefor IgG

Serumsamplespositivefor IgM

Page 16: EU-India S&T Cooperation - Arnab Sen PhD IVRI, Mukteswar · 2019-11-05 · Changes in epidemiology (changes in distribution, disease incidence, ... Peste Des Petits Ruminants (PPR)

Samples positive by s ELISA and c ELISA 101Samples positive by s ELISA but negative by c ELISA

******could signify persistence or antigenic varian ts.21****

Samples positive by c ELISA but negative by s ELISA 18

Samples with regard to antigen and antibody detection

020406080

100120

Samples positiveby both S and C

ELISA

Samples positiveby S ELISA andnegative by C

ELISA

Samples positiveby C ELISA andnegative by S

ELISA

Page 17: EU-India S&T Cooperation - Arnab Sen PhD IVRI, Mukteswar · 2019-11-05 · Changes in epidemiology (changes in distribution, disease incidence, ... Peste Des Petits Ruminants (PPR)

1 2 3 4 5 6 7 M 8 9 10 111, 2, 3 : negative serum

4, 5 : positive serum immunoprecipitated with polyclonal antibodies

6, 7, 8, 9 : positive serum immunoprecipitated with anti H monoclonal antibodies

10 : infected cell lysate immunoprecipitated with polyclonal antibodies

11 : infected cell lysate

Immunoprecipitation of serum samples positive for PPR viral antigen

• Red band in M lane – 72 kDa fermentas prestained markers

• With polyclonal two bands are seen corresponding to 68kda (H protein) and 55kda (N protein)

• With monoclonal only one band at 68 kda is seen.

Serum samples were precleared extensively by equilibrated agarose before immunoprecipitaing with rabbit HIS or with monoclonal antibody.

68 kDa

55 kDa

Page 18: EU-India S&T Cooperation - Arnab Sen PhD IVRI, Mukteswar · 2019-11-05 · Changes in epidemiology (changes in distribution, disease incidence, ... Peste Des Petits Ruminants (PPR)

Detection of PPRV “N” and PPRV “M” gene in serum samp les by PCR

PPRN gene based PCR

(162 bp product)

PPRM gene based PCR (124

bp product

Page 19: EU-India S&T Cooperation - Arnab Sen PhD IVRI, Mukteswar · 2019-11-05 · Changes in epidemiology (changes in distribution, disease incidence, ... Peste Des Petits Ruminants (PPR)

� Viral load was more in plasma (almost > 1.5 times) than whole blood

� Challenged animals exhibited high level of PPRV ant igen titer [from 8-9th day post challenge and persisted up to 11 th day post challenge or till the animal survived the disease] than vacci nated ones

� Some animals showed positive reaction for PPRV from 0 day onward, indicating possible viral persistence

� PBMCs showed negative reaction for PPRV in s ELISA in all animals

� Viral antigen was detected in PBMCs of PPR infected goats from 72 hrs to 11 th day post infection by Q-PCR using SYBR green dye chemistry

Page 20: EU-India S&T Cooperation - Arnab Sen PhD IVRI, Mukteswar · 2019-11-05 · Changes in epidemiology (changes in distribution, disease incidence, ... Peste Des Petits Ruminants (PPR)

Plasma

0.05

0.10

0.150.20

0.25

0.30

0.35

0.40

0.450.50

0.55

0.60

0hpi

4hpi

72hp

i7d

pi11

dpi

15dp

i19

dpi

2hpc

24hp

c5d

pc9d

pc13

dpc

18dp

c

No. of Observation

OD

at 4

92 n

m

Goat 12

ChallengedVaccinated

Cutoff = 0.168

0.050.10

0.150.200.25

0.30

0.35

0.40

0.450.50

0.55

0.60

0hpi

4hpi

72hp

i7d

pi11

dpi

15dp

i19

dpi

2hpc

24hp

c5d

pc9d

pc13

dpc

18dp

c

No. of Observation

OD

at 4

92 n

m

Goat 71

ChallengedVaccinated

Cutoff = 0.168

0.050.10

0.150.200.25

0.30

0.35

0.40

0.450.50

0.55

0.60

0hpi

4hpi

72hp

i7d

pi11

dpi

15dp

i19

dpi

2hpc

24hp

c5d

pc9d

pc13

dpc

18dp

c

No. of Observation

OD

at 4

92 n

m

Goat 347

ChallengedVaccinated

Cutoff = 0.176

0.05

0.10

0.150.20

0.25

0.30

0.35

0.400.450.50

0.550.60

0hpi

4hpi

72hp

i7d

pi11

dpi

15dp

i19

dpi

2hpc

24hp

c5d

pc9d

pc13

dpc

18dp

c

No. of Observation

OD

at 4

92 n

m

Goat 389

ChallengedVaccinated

Cutoff = 0.175

Detection of PPRV Antigen In Plasma of Vaccinated Followed by Challenge Animal by sELISA

High reactor High reactor

Low reactor Low reactor

Page 21: EU-India S&T Cooperation - Arnab Sen PhD IVRI, Mukteswar · 2019-11-05 · Changes in epidemiology (changes in distribution, disease incidence, ... Peste Des Petits Ruminants (PPR)

Plasma

0.05

0.10

0.150.20

0.25

0.30

0.35

0.40

0.450.50

0.55

0.60

0hpc

2hpc

4hpc

24hp

c72

hpc

5dpc

7dpc

9dpc

No. of Observation

OD

at 4

92 n

mGoat 49

Challenged

Cutoff = 0.149

Death 0.05

0.10

0.150.20

0.25

0.30

0.35

0.40

0.450.50

0.55

0.60

0hpc

2hpc

4hpc

24hp

c72

hpc

5dpc

7dpc

9dpc

No. of Observation

OD

at 4

92 n

m

Goat 73

Challenged

Cutoff = 0.180

Death

0.05

0.10

0.150.20

0.25

0.30

0.35

0.40

0.450.50

0.55

0.60

0hpc

2hpc

4hpc

24hp

c72

hpc

5dpc

7dpc

9dpc

11dp

c

No. of Observation

OD

at 4

92 n

m

Goat 79

Challenged

Cutoff = 0.180

Death

0.05

0.10

0.150.20

0.25

0.30

0.35

0.40

0.450.50

0.55

0.60

0hpc

2hpc

4hpc

24hp

c72

hpc

5dpc

7dpc

9dpc

11dp

c13

dpc

15dp

c17

dpc

19dp

c

No. of Observation

OD

at 4

92 n

m

Goat 390

Challenged

Cutoff = 0.180

Detection of PPRV Antigen In Plasma of Challenged Animal by sELISA

Sub optimal lethal

Acute, lethal

Acute, Convalescent

Sub optimal, Acute

Page 22: EU-India S&T Cooperation - Arnab Sen PhD IVRI, Mukteswar · 2019-11-05 · Changes in epidemiology (changes in distribution, disease incidence, ... Peste Des Petits Ruminants (PPR)

0.05

0.10

0.15

0.20

0.25

0.30

0.35

0.40

0hpi

4hpi

72hp

i7d

pi11

dpi

15dp

i19

dpi

2hpc

24hp

c5d

pc9d

pc13

dpc

18dp

c

No. of Observation

OD

at 4

92 n

mGoat 12

ChallengedVaccinated

Cutoff = 0.122

0.05

0.10

0.15

0.20

0.25

0.30

0.35

0.40

0hpi

4hpi

72hp

i7d

pi11

dpi

15dp

i19

dpi

2hpc

24hp

c5d

pc9d

pc13

dpc

18dp

c

No. of Observation

OD

at 4

92 n

m

Goat 71

ChallengedVaccinated

Cutoff = 0.130

0.05

0.10

0.15

0.20

0.25

0.30

0.35

0.40

0hpi

4hpi

72hp

i7d

pi11

dpi

15dp

i19

dpi

2hpc

24hp

c5d

pc9d

pc13

dpc

18dp

c

No. of Observation

OD

at 4

92 n

m

Goat 389

ChallengedVaccinated

Cutoff = 0.140

0.05

0.10

0.15

0.20

0.25

0.30

0.35

0.40

0hpi

4hpi

72hp

i7d

pi11

dpi

15dp

i19

dpi

2hpc

24hp

c5d

pc9d

pc13

dpc

18dp

c

No. of Observation

OD

at 4

92 n

m

Goat 347

ChallengedVaccinated

Cutoff = 0.138

Whole Blood

Detection of PPRV Antigen In Whole Blood of Vaccinated Followed by Challenge Animal by sELISA

High reactorHigh reactor

Moderate reactor

Moderate reactor

Page 23: EU-India S&T Cooperation - Arnab Sen PhD IVRI, Mukteswar · 2019-11-05 · Changes in epidemiology (changes in distribution, disease incidence, ... Peste Des Petits Ruminants (PPR)

0.05

0.10

0.15

0.20

0.25

0.30

0.35

0.40

0.45

0.50

0hpc

2hpc

4hpc

24hp

c72

hpc

5dpc

7dpc

9dpc

No. of Observation

OD

at 4

92 n

m

Goat 49

Challenged

Cutoff = 0.139

Death

0.05

0.10

0.15

0.20

0.25

0.30

0.35

0.40

0.45

0.50

0hpc

2hpc

4hpc

24hp

c72

hpc

5dpc

7dpc

9dpc

No. of Observation

OD

at 4

92 n

m

Goat 73

Challenged

Cutoff = 0.139

Death

0.05

0.10

0.15

0.20

0.25

0.30

0.35

0.40

0.45

0.50

0hpc

2hpc

4hpc

24hp

c72

hpc

5dpc

7dpc

9dpc

11dp

c

No. of Observation

OD

at 4

92 n

m

Goat 79

Challanged

Cutoff = 0.145

Death

0.05

0.10

0.15

0.20

0.25

0.30

0.35

0.40

0.45

0.50

0hpc

2hpc

4hpc

24hp

c72

hpc

5dpc

7dpc

9dpc

11dp

c13

dpc

15dp

c17

dpc

19dp

c

No. of Observation

OD

at 4

92 n

m

Goat 390

Challanged

Cutoff = 0.145

Whole Blood

Detection of PPRV Antigen In Whole Blood of Challenged Animal by sELISA

Acute, lethal

Acute, Convalescent

Sub optimal, Acute

Sub optimal lethal

Page 24: EU-India S&T Cooperation - Arnab Sen PhD IVRI, Mukteswar · 2019-11-05 · Changes in epidemiology (changes in distribution, disease incidence, ... Peste Des Petits Ruminants (PPR)

Detection of PPRV Antigen in PBMCs of Challenged Animal by Q-PCR Using SYBR Green Dye

-10

20

50

80

110

140

170

200

1hpi

3hpi

5hpi

48hp

i4d

pi6d

pi8d

pi10

dpi

12dp

i14

dpi

16dp

i18

dpi

20dp

i

Observation2

Del

ta C

tT v

alue

GN 390

-10

20

50

80

110

140

170

200

Observation

2 D

elta

CtT

val

ue

GN 79

PPR N-Gene

Virus detected in unvaccinated challenged animals from 72 hours to 11 days post challenge

Page 25: EU-India S&T Cooperation - Arnab Sen PhD IVRI, Mukteswar · 2019-11-05 · Changes in epidemiology (changes in distribution, disease incidence, ... Peste Des Petits Ruminants (PPR)
Page 26: EU-India S&T Cooperation - Arnab Sen PhD IVRI, Mukteswar · 2019-11-05 · Changes in epidemiology (changes in distribution, disease incidence, ... Peste Des Petits Ruminants (PPR)

Interferon Gamma (IFN-γ) Gene

• Expression of IFN-γ in vaccinated animals was less

pronounced in comparison to infected animals

• Early expression was seen in challenged animals than

vaccinated ones

0

5

10

15

20

25

30

35

40

0h 2hpi

4hpi

24hpi

72hpi5d

pi7d

pi9d

pi11

dpi

13dp

i15

dpi17

dpi

19dp

i21

dpi

Observation

2 D

elta

CtT

val

ue

GN 71

0

5

10

15

20

25

30

35

40

0h

2hpi

4hpi

24hpi

72hpi

5dpi

7dpi

9dpi

11dpi

Obsrvation

2 D

elta

CtT

val

ue

GN 79

Vaccinated Challenged

Page 27: EU-India S&T Cooperation - Arnab Sen PhD IVRI, Mukteswar · 2019-11-05 · Changes in epidemiology (changes in distribution, disease incidence, ... Peste Des Petits Ruminants (PPR)

Interleukin-4 (IL-4) Gene

• Marked difference experienced between

vaccinated and challenged groups

• Down-regulation seen in challenged animals

(4dpc-15dpc/till death)

• No much variation in expression in vaccinated

animals ( steady throughout experiment)

0

1

2

3

4

5

6

7

8

0h 2hpi

4hpi

24hp

i72

hpi

5dpi

7dpi

9dpi

11dp

i13

dpi

15dp

i17

dpi

19dp

i21

dpi

Observation

2 D

elta

CtT

val

ue

GN 71

0

1

2

3

4

5

6

7

80h 2hpi

4hpi

24hp

i

72hp

i

5dpi

7dpi

9dpi

11dp

i

Observation2

Del

ta C

tT v

alue

GN 79

Vaccinated Challenged

Page 28: EU-India S&T Cooperation - Arnab Sen PhD IVRI, Mukteswar · 2019-11-05 · Changes in epidemiology (changes in distribution, disease incidence, ... Peste Des Petits Ruminants (PPR)

� Plasma-in general-harbors more PPR virus than any other blood component

� PPRV can be detected in PBMCs by 3rd day post challenge by Q-PCR

� Cytokine picture reveals that:

� Vaccinated animals showed Th2 response (Humoral) i.e.. ↑ IL-4

� Challenged animals exhibited Th1 response (CMI) i.e.. ↓ IL-4

� PPRV antigen in serum could indicate either presence of immune

complexes or persistence???

� Relevance of serum/blood/plasma borne PPR virus to its pathogenesis

needs to be investigated.

� The role of sub-clinical PPR infection in atypical host???

� PPR along with related small ruminant infections need to be identified with

regard to pathogenesis

Page 29: EU-India S&T Cooperation - Arnab Sen PhD IVRI, Mukteswar · 2019-11-05 · Changes in epidemiology (changes in distribution, disease incidence, ... Peste Des Petits Ruminants (PPR)

� Typically affected by interaction of multiple factors.

� The emergence/re-emergence of a disease ⇒⇒⇒⇒ an unintended consequence of many developmental activities perceived as progress.

� The commonly recognized factors include:

• microbial adaptation and change

• human/animal demographics and behavior

• environmental changes

• technology and economic development

• breakdown in medical and veterinary public health measures

and surveillance and

• international travel and commerce

(Lederberg et al., 1992)

Page 30: EU-India S&T Cooperation - Arnab Sen PhD IVRI, Mukteswar · 2019-11-05 · Changes in epidemiology (changes in distribution, disease incidence, ... Peste Des Petits Ruminants (PPR)

‘PROSPEROUS – PEACEFUL – SAFE HUMAN HABITAT’

Dr. Abdul Kalam

Nuclear Scientist &

Former President of India

Delhi Sustainable Development Summit-2003

The most important need of the country is an integrated

developmental plan and empowered management

structures in the areas of Education and Healthcare,

Agriculture and Food Processing, Information and

Communication Technology, Strategic Sectors,

Infrastructure Industries and Geo-politics & Ecology.

Page 31: EU-India S&T Cooperation - Arnab Sen PhD IVRI, Mukteswar · 2019-11-05 · Changes in epidemiology (changes in distribution, disease incidence, ... Peste Des Petits Ruminants (PPR)

Division of Virology Since 1889

IVRI, Mukteswar

Thank You…..