full wwpdb em validation report o i · 2020. 12. 6. · page 2 ullf wwpdb em alidationv report...

Full wwPDB EM Validation Report iO

Dec 6, 2020 � 04:47 am GMT

PDB ID : 6FYXEMDB ID : EMD-4327

Title : Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminaldomain (model C1)

Authors : Llacer, J.L.; Hussain, T.; Gordiyenko, Y.; Ramakrishnan, V.Deposited on : 2018-03-12Resolution : 3.05 Å(reported)

This is a Full wwPDB EM Validation Report for a publicly released PDB entry.

We welcome your comments at [email protected] user guide is available at

https://www.wwpdb.org/validation/2017/EMValidationReportHelpwith speci�c help available everywhere you see the iO symbol.

The following versions of software and data (see references iO) were used in the production of this report:

EMDB validation analysis : 0.0.0.dev61Mogul : 1.8.5 (274361), CSD as541be (2020)

MolProbity : 4.02b-467buster-report : 1.1.7 (2018)

Percentile statistics : 20191225.v01 (using entries in the PDB archive December 25th 2019)Ideal geometry (proteins) : Engh & Huber (2001)

Ideal geometry (DNA, RNA) : Parkinson et al. (1996)Validation Pipeline (wwPDB-VP) : 2.15.1

https://www.wwpdb.org/validation/2017/EMValidationReportHelphttps://www.wwpdb.org/validation/2017/EMValidationReportHelphttps://www.wwpdb.org/validation/2017/EMValidationReportHelphttps://www.wwpdb.org/validation/2017/EMValidationReportHelp#references

Full wwPDB EM Validation Report EMD-4327, 6FYX

1 Overall quality at a glance iO

The following experimental techniques were used to determine the structure:ELECTRON MICROSCOPY

The reported resolution of this entry is 3.05 Å.

Percentile scores (ranging between 0-100) for global validation metrics of the entry are shown inthe following graphic. The table shows the number of entries on which the scores are based.

MetricWhole archive(#Entries)

EM structures(#Entries)

Ramachandran outliers 154571 4023Sidechain outliers 154315 3826RNA backbone 4643 859

The table below summarises the geometric issues observed across the polymeric chains and their �tto the map. The red, orange, yellow and green segments of the bar indicate the fraction of residuesthat contain outliers for >=3, 2, 1 and 0 types of geometric quality criteria respectively. A greysegment represents the fraction of residues that are not modelled. The numeric value for eachfraction is indicated below the corresponding segment, with a dot representing fractions


Continued from previous page...

Mol Chain Length Quality of chain

9 F 227

10 G 236

11 H 190

12 I 201

13 J 188

14 K 106

15 L 156

16 M 134

17 N 151

18 O 137

19 P 142

20 Q 143

21 R 136

22 S 146

23 T 144

24 U 117

25 V 87

26 W 130

27 X 145

28 Y 135

29 Z 108

30 a 119

31 b 82

32 c 67

33 d 56Continued on next page...


Continued from previous page...

Mol Chain Length Quality of chain

34 e 63

35 f 150

36 g 326

37 h 25

38 i 153

39 j 304

40 k 527

41 l 285

42 m 405

43 o 964

44 p 763

45 q 812

46 r 274

47 s 347

The following table lists non-polymeric compounds, carbohydrate monomers and non-standardresidues in protein, DNA, RNA chains that are outliers for geometric or electron-density-�t crite-ria:

Mol Type Chain Res Chirality Geometry Clashes Electron density2 C4J 2 1190 X - - -


2 Entry composition iO

There are 51 unique types of molecules in this entry. The entry contains 104404 atoms, of which0 are hydrogens and 0 are deuteriums.

In the tables below, the AltConf column contains the number of residues with at least one atomin alternate conformation and the Trace column contains the number of residues modelled with atmost 2 atoms.

Molecule 1 is a RNA chain called tRNAi.

Mol Chain Residues Atoms AltConf Trace

1 1 75Total C N O P1639 734 298 531 76

0 0

Molecule 2 is a RNA chain called 18S ribosomal RNA.


2 2 1780Total C N O P37812 16904 6659 12469 1780

0 0

There are 2 discrepancies between the modelled and reference sequences:

Chain Residue Modelled Actual Comment Reference2 676 G U con�ict GB 496422082 678 U G con�ict GB 49642208

Molecule 3 is a RNA chain called mRNA (31-MER).


3 3 31Total C N O P719 324 108 252 35

4 0

Molecule 4 is a protein called 40S ribosomal protein S0.


4 A 219Total C N O S1702 1085 299 316 2

0 0



5 B 225Total C N O S1797 1135 330 329 3

0 0

https://www.wwpdb.org/validation/2017/EMValidationReportHelp#entry_composition


Molecule 6 is a protein called KLLA0F09812p.


6 C 220Total C N O S1648 1053 291 300 4

0 0

Molecule 7 is a protein called KLLA0D08305p.


7 D 227Total C N O S1774 1126 320 323 5

0 0



8 E 260Total C N O S2078 1322 393 359 4

0 0

Molecule 9 is a protein called KLLA0D10659p.


9 F 206Total C N O S1609 1008 298 300 3

0 0



10 G 230Total C N O S1832 1146 352 330 4

0 0



11 H 184Total C N O1483 950 270 263

0 0



12 I 188Total C N O S1489 923 300 265 1

0 0

Molecule 13 is a protein called KLLA0E23673p.



13 J 182Total C N O S1471 929 287 254 1

0 0

Molecule 14 is a protein called KLLA0B08173p.


14 K 96Total C N O S809 533 129 146 1

0 0

Molecule 15 is a protein called KLLA0A10483p.


15 L 155Total C N O S1248 798 237 210 3

0 0



16 M 117Total C N O885 553 161 171

0 0



17 N 151Total C N O S1195 761 224 207 3

0 0



18 O 129Total C N O S954 584 191 176 3

0 0



19 P 117Total C N O S923 592 165 161 5

0 0




20 Q 141Total C N O1105 709 204 192

0 0



21 R 130Total C N O S1033 643 194 193 3

0 0



22 S 145Total C N O S1189 739 239 209 2

0 0

Molecule 23 is a protein called KLLA0A07194p.


23 T 143Total C N O1110 693 210 207

0 0



24 U 106Total C N O S845 540 152 152 1

0 0



25 V 87Total C N O S687 424 126 135 2

0 0



26 W 129Total C N O S1021 651 187 180 3

0 0




27 X 144Total C N O S1119 708 218 191 2

0 0



28 Y 134Total C N O1061 665 207 189

0 0



29 Z 78Total C N O S594 376 111 106 1

0 0



30 a 103Total C N O S812 500 173 134 5

0 0



31 b 81Total C N O S609 379 112 113 5

0 0



32 c 64Total C N O S499 308 99 91 1

0 0



33 d 55Total C N O S461 289 93 78 1

0 0




34 e 60Total C N O S472 295 96 80 1

0 0

Molecule 35 is a protein called Ubiquitin-40S ribosomal protein S27a.


35 f 74Total C N O S584 374 111 95 4

0 0

Molecule 36 is a protein called KLLA0E12277p.


36 g 320Total C N O S2469 1561 432 471 5

0 0

Molecule 37 is a protein called 60S ribosomal protein L41-A.


37 h 25Total C N O S233 142 63 27 1

0 0

Molecule 38 is a protein called Eukaryotic translation initiation factor 1A.


38 i 121Total C N O S958 587 183 183 5

0 0

Molecule 39 is a protein called Eukaryotic translation initiation factor 2 subunit alpha.


39 j 249Total C N O S2006 1283 333 382 8

0 0

Molecule 40 is a protein called Eukaryotic translation initiation factor 2 subunit gamma.


40 k 414Total C N O S3123 1985 560 562 16

0 0

Molecule 41 is a protein called Eukaryotic translation initiation factor 2 subunit beta.



41 l 128Total C N O S1036 661 186 182 7

0 0

Molecule 42 is a protein called Eukaryotic translation initiation factor 5.


42 m 147Total C N O S1140 724 201 208 7

0 0

Molecule 43 is a protein called Eukaryotic translation initiation factor 3 subunit A.


43 o 529Total C N O S4070 2597 697 769 7

0 0

Molecule 44 is a protein called Eukaryotic translation initiation factor 3 subunit B.


44 p 647Total C N O S5114 3274 880 942 18

0 0

Molecule 45 is a protein called eIF3c,eIF3c.


45 q 621Total C N O S4827 3076 813 926 12

0 0

Molecule 46 is a protein called Eukaryotic translation initiation factor 3 subunit G.


46 r 49Total C N O392 240 76 76

0 0

Molecule 47 is a protein called Eukaryotic translation initiation factor 3 subunit I.


47 s 330Total C N O S2606 1661 429 507 9

0 0

Molecule 48 is MAGNESIUM ION (three-letter code: MG) (formula: Mg).


Mol Chain Residues Atoms AltConf

48 2 116Total Mg116 116

0

48 k 1Total Mg1 1

0

Molecule 49 is ZINC ION (three-letter code: ZN) (formula: Zn).


49 b 1Total Zn1 1

0

49 a 1Total Zn1 1

0

49 l 1Total Zn1 1

0

49 f 1Total Zn1 1

0

49 m 1Total Zn1 1

0

Molecule 50 is METHIONINE (three-letter code: MET) (formula: C5H11NO2S).


50 k 1Total C N O S8 5 1 1 1

0

Molecule 51 is PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER (three-letter code: GCP) (formula: C11H18N5O13P3).



51 k 1Total C N O P32 11 5 13 3

0


3 Residue-property plots iO

These plots are drawn for all protein, RNA, DNA and oligosaccharide chains in the entry. The�rst graphic for a chain summarises the proportions of the various outlier classes displayed in thesecond graphic. The second graphic shows the sequence view annotated by issues in geometry andatom inclusion in map density. Residues are color-coded according to the number of geometricquality criteria for which they contain at least one outlier: green = 0, yellow = 1, orange = 2and red = 3 or more. A red diamond above a residue indicates a poor �t to the EM map forthis residue (all-atom inclusion < 40%). Stretches of 2 or more consecutive residues without anyoutlier are shown as a green connector. Residues present in the sample, but not in the model, areshown in grey.

• Molecule 1: tRNAi

Chain 1:

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• Molecule 2: 18S ribosomal RNA

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https://www.wwpdb.org/validation/2017/EMValidationReportHelp#residue_plots


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• Molecule 3: mRNA (31-MER)

Chain 3:

G G G C U C U C U U C U C U C15

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• Molecule 4: 40S ribosomal protein S0


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MET

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• Molecule 6: KLLA0F09812p

Chain C:

MET

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PRO

ARG

ARG

GLY

GLY

PHE

GLY

GLY

ALA

ASN

ARG

GLY

GLY

ARG

GLY

GLY

ARG

ARG

GLY

GLY

ARG

ARG

ASP

GLN

E36

�E37

�K38

�G39

W40

T44

I58

V68

K69

E70

F71

Q72

D83

M86

V91

Q94

T95

R100�

T101

R102

V109

V116

R131�

V141

R145

R146

T151

N152

L153

G154

Q155

L159

R173

S181

V198

T206

Y227

L230

N233

Q238

A239�

L240

T241

D250�

T253

A254�

S255�

LYS

LYS

LYS

LEU

• Molecule 7: KLLA0D08305p

Chain D:

MET

VAL

A3

�

L11

V12

A13

D14

�

E23

E31

�

E38

�

V41

�T42

P43

E47

E61

�N62

G63

�

I66

L69

T70

L71

K75

R76

Y79

K80

R81

�

L86

V91

H92

�

L110

R116

R117

Y120

E128

L142

R143�

M150�

V164

R173

L176

L177

R178�

I184

R194

S197�

G198�

D204�

E214�

L218�

E219�

P220

D224�

Y225

R226�

P227�

T228�

E229�

PRO

VAL

GLU

ALA

ALA

GLU

SER

ALA


Chain E:


MET

A2

�

L9

W18

D21

L38

R39

L42

R49

N50

R51

N57

Q67

D73

R77

T80

T81

R100

K106

G107

R108

R113

I114

K133�

K155

D163

T166

I173

K174

F175�

V181

R187

I195

R198

E199

R200

G204

F205

D206

L207

V208

T220

R221

V225

L238

K245

R254

H259�

G260�

L261�

• Molecule 9: KLLA0D10659p

Chain F:

MET

SER

GLU

HIS

GLU

ALA

GLN

VAL

GLU

VAL

GLU

VAL

GLN

GLU

ASP

PHE

GLU

VAL

VAL

GLN

GLU

F22

�V23

�P24

�V25

�E26

�L27

�A28

�

V33

�E34

�I35

Q36

�Q37

�A38

�Q39

�

I42

K43

L44

K56

�D57

�

D62

�

Q65

I66

I70

Y71

V72

R78

V92

N102

G103�

R104

L110

E121

T127

Q133

D137�

R145

R150�

V151

G152�

G153�

G154�

G155�

A156�

A157�

R158

R159

Q160

D163

R168

R169

E183

R187

N188

I189

I192

L196

I213

L219

R227


Chain G:

M1

C15

D19

�

R25

�V26

D29

�

E35

�

E39

�

G42

�D43

�

K46

�

I52

N56

H81

�

R92

D105�

V108

E122�

T125

R132

E150�

D151

D152

V153

R154

E161�

V162

T163�

K164�

G165�

D166�

K171�

R177

T180

Q199

R202

E203

R215

E222

K223�

A224�

E225�

V226�

R227�

K228�

R229�

R230�

ALA

SER

SER

LEU

LYS

ALA


Chain H:

MET

SER

ASP

P4

K7

�

S10

�Q11

�

T14

E15

L16

�

Q19

F24

�

N29

�

P32

�E33

�L34

�K35

A36

�D37

�L38

R39

�

K44

�

R47

�

E50

�V51

A52

�G53

�G54

�

V60

V64

Y70

H71

Q74

E80

L81

E82

�K83

�

Q86

�D87

R88

L93

I98

K105�

S106

R107

Q108�

R114

S115

R116

T117

L118

H122

D123�

L126

E127

D128

R139

D158

V159

Q160�

D163�

N164

N174

K175

L176

S187�

GLU

THR

HIS


Chain I:

MET

G2

R5

Q20

F21

R22

K23

K24

R25

E28

�L29

N35

T40

V46

N52

L58

R59

V72

R92

T93

N94

T95

L96

A99

S120�

L121�

G122

K123�

LYS

LYS

ASN

THR

LYS

ALA

GLU

GLU

GLU

THR

ALA

THR

T136�

S137�

K138�

N139�

T140�

E141�

R142�

K143�


W144

A145�

A146�

R147�

A148

A149�

I153

E154

D158

R179

R196

A199�

K200�

K201�

• Molecule 13: KLLA0E23673p

Chain J:

MET

P2

Y8

S9

K10

D25

L28

K37

N38

I45

L49

L60

E64

L70

L93

K100

D103

R107

R108

L109

L118

V127

Q131

I134

G137

F146

R149

L150

E151�

K154

R160�

T161

P169

G170

R171

A179�

A180�

G181�

G182�

E183�

GLU

ALA

ASP

GLU

GLU

• Molecule 14: KLLA0B08173p

Chain K:

M1

�

D7

�

Q13

H14

L15

L21

V22

A23

D26

�

E34

I35

D36

�

N39

L40

K44

L49

Y64

L76

�

H85

�I86

A89

�

L92

�A93

�G94

�Q95

�S96

�GLY

ASP

GLN

ARG

PRO

GLN

GLY

LYS

LYS

TYR

• Molecule 15: KLLA0A10483p

Chain L:

MET

S2

�T3

�E4

�L5

�T6

V7

E10

R11

�

K26

�A27

N28

�R29

�K30

�

K36

D55

K56

R67

G68

K69

R79

�

V111

R116�

V117

V125

T134

V135

R136

S144�

A145�

T146�

G147�

K148�

A149�

N150�

K151�

Q152�

F153�

A154�

K155�

F156�


Chain M:

MET

SER

ASP

VAL

GLU

GLU

VAL

GLN

GLN

VAL

PRO

VAL

ALA

GLU

LEU

THR

I17

�E18

�D19

�A20

�L21

�K22

V23

�

R26

�T27

�S28

L29

�V30

�H31

�D32

�G33

�L34

�A35

�R36

�G37

L38

R39

E40

L45

�T46

R47

�G48

�E49

�G50

�Q51

�L52

A53

�V54

L55

V56

�E57

�S58

�V59

�T60

E61

�E62

�A63

I64

�

L67

V68

�

L71

�A72

T73

�E74

�ASN

N76

�V77

P78

L79

�I80

�K81

V82

A83

�D84

�A85

�K86

�Q87

�L88

G89

E90

�W91

A92

G93

�L94

G95

�K96

�I97

�D98

�R99

�D100�

G101

N102�

A103�

R104

K105�

V106�

A109�

S110�

K115�

N116�

W117

G118�

A119�

D120�

T121�

Q122�

E123�

R124

E125

I126�

L127

L128�

E129�

H130�

F131�

S132�

Q133�

Q134�


Chain N:


M1

�G2

�R3

K7

�G8

K9

R20

E83

�

L88

K107

D110�

L115

I116

R121

S143�

A144�

T145�

A148�

L149�

V150�

N151�


Chain O:

MET

ALA

ASN

VAL

VAL

GLN

ALA

LYS

D9

�N10

�S11

�

F20

E37

A40

R41

V42

K49

�A50

D51

R52

Q65

K72

R84

A85

T86

S91

K92

T93

P94

G95

�

R114

D117�

D124

S125

T126

L137


Chain P:

MET

SER

GLU

ALA

ALA

ALA

PRO

ARG

LYS

ARG

SER

PHE

K13

�

Y17

L36

A37

R40

L49

�S50

E51

�K52

�

L56

K59

L60

E69

N70

�E71

�K72

H79

P87

E88

M89

V94

V105

M111

V126

R127�

H128

G129�

ARG

ALA

GLY

ALA

THR

THR

SER

ARG

PHE

ILE

PRO

LEU

ARG


Chain Q:

MET

SER

T3

K26

Q40

�

L52

D58

�

V69

V78

R82

Q83

K87

G88

L89

Q94

V97

D113

L116

K127

R137

F138

R143


Chain R:

MET

G2

R3

V4

R5

R11

�

M26

�

Q29

D36

�

L46

T55

K63

�

V66

�

R78

�

K81

�D82

�

V88

�S89

A90

L91

D92

�

S96

�N97

�D98

V99

�L100

N101�

T106

L109

V110

N111�

L115�

K116�

L117

V124�

S125�

A126�

V127�

R128�

D129�

R130�

R131�

PHE

ARG

LYS

ARG

ASN


Chain S:

MET

S2

�L3

V4

�V5

Q6

�E7

�Q8

�G9

�

L15

R41

D51

�

R57

L61

M73

F85

L86

N87

D91

V92

D97

L105

E106

S107

K108

L109

R110

D111�

E114

R120�

R123�

F128�

R134

G135

Q136�

H137

T141�

G142�

R143

R144�

R145�

A146�

• Molecule 23: KLLA0A07194p

Chain T:


MET

P2

�

D8

N16

N17

Q23

L28

Q48

I65

R68

L79

R86

G87

V88

K110

L111

I124

S125

D126

L129

D133

L140

E141�

D142�

E143�

E144�


Chain U:

MET

SER

GLN

VAL

GLU

LYS

LYS

SER

GLU

GLN

GLN

Q15

�E16

�V17

�V18

�I19

�

T27

V31

K32

�

E46

�

K49

�

K52

V56

R57

I65

E74

K77

I86

R89

E94

�A95

P96

A97

H98

�

R102�

T107�

I108

E109�

P110�

D113�

V114

E115�

I118�

A119�

A120�


Chain V:

M1

L11

Y12

S30

Y50

E64

�A65

D66

�

D76

K80

�

R87

�


Chain W:

MET

T2

Q24

V25

R28

P29

I47

S58

C72

P77

R78

D85

�

K88

L104

V129

Y130


Chain X:

MET

G2

K3

G4

K14

L15

R16

L34

�

S41

I59

Q63

V72

N79

D90

N94

F107

V127

E138

P143�

R144�

S145�


Chain Y:

MET

S2

�D3

�A4

R20

V35

S36

L74

K84

E98

�

E101�

R105

R111

T121

I125�

A129�

R132

N133�

A134�

D135�


Chain Z:


MET

PRO

PRO

LYS

GLN

GLN

LEU

SER

LYS

ALA

ALA

LYS

ALA

ALA

ALA

ALA

MET

ALA

GLY

GLY

LYS

LYS

SER

LYS

LYS

LYS

TRP

S28

�K29

�K30

�S31

�H32

�K33

�D34

�K35

�A36

�K37

�H38

A39

�V40

�V41

L42

�D43

�Q44

D45

�K46

�

I50

�M51

K52

�E53

�A54

�P55

T56

�

D67

�R68

�F69

�

L75

A79

�L80

R81

�H82

�L83

E84

�N85

�E86

�G87

�I88

I89

�

S93

�K94

�

K97

�Q98

�A99

�

R103�

A104�

T105�

ALA

SER

GLU


Chain a:

MET

P2

K12

K13

D33

�

R38

M39

A48

�

Y59

L64

I75

V84

R89

�

R93

�

Q99

�R100�

P101�

R102�

F103�

N104�

ARG

ASP

ASN

LYS

VAL

SER

PRO

ALA

ASP

ALA

ALA

LYS

LYS

ALA

LEU


Chain b:

MET

V2

L3

E15

�

L21

K22

T23

L24

H31

P38

�G39

�

T52

E57

�

S60

�T61

V62

E75

�

K82


Chain c:

MET

ASP

THR

K4

�T5

�P6

�

K14

V15

L16

D35

R38

�

P47

V48

R49

E50

M57

�E58

S59

E60

�

R64

�R65

�L66

R67

�


Chain d:

MET

A2

�H3

E4

�

K16

R19

L30

N37

I38

D39

R40

Q41

R56


Chain e:

MET

G2

�K3

�V4

H5

�

L8

A11

Q17

Q24

E25

K26

K36

V47

T48

�L49

�T50

�N51

�G52

�K53

�R54

�K55

S61

�SER

GLN

• Molecule 35: Ubiquitin-40S ribosomal protein S27a

Chain f:


MET

GLN

ILE

PHE

VAL

LYS

THR

LEU

THR

GLY

LYS

THR

ILE

THR

LEU

GLU

VAL

GLU

SER

SER

ASP

THR

ILE

ASP

ASN

VAL

LYS

SER

LYS

ILE

GLN

ASP

LYS

GLU

GLY

ILE

PRO

PRO

ASP

GLN

GLN

ARG

LEU

ILE

PHE

ALA

GLY

LYS

GLN

LEU

GLU

ASP

GLY

ARG

THR

LEU

SER

ASP

TYR

ASN

ILE

GLN

LYS

GLU

SER

THR

LEU

HIS

LEU

VAL

LEU

ARG

LEU

ARG

GLY

GLY

G77

�K78

�K79

�R80

�K81

�K82

�K83

�V84

�Y85

�T86

�T87

�P88

�K89

K90

�I91

R92

H93

K94

�

L100�

A101

V102

L103�

Y106�

K107

V108�

D109�

D110�

E111�

G112�

K113�

V114�

A115

K116�

L117

R118�

K119

E120�

C124�

G125�

P126

G127�

D135�

R136

C142�

A147�

T148�

Q149�

K150�

• Molecule 36: KLLA0E12277p

Chain g:

MET

SER

S3

�S4

�N5

�I6

�M7

L8

R11

�

E15

�G16

A28

�

E50

�N51

�E52

�Q53

�Q54

R60

G64

Q70

D71

�V72

A76

�D77

�

D87

N94

E101�

V114

D117�

A118�

N119�

S120

K130

V157

N161�

L162�

E163�

D164�

GLY

GLU

V167�

D168�

D169�

G170�

R171

I172�

V175

K181

L188

N189

GLU

ASP

S192�

Y193

R194�

I195

G201

H202

N203�

I206

N207

Q210

A219�

S220

A221�

G222

K223

D224�

L232�

K233�

H234�

K244

D245

E246

L250

E273�

N274�

L277�

E280

E284�

F285

A286�

G287�

K290�

A291�

Q292

D293

A303�

L308

R318

M323�

T324�

A325�

N326�

• Molecule 37: 60S ribosomal protein L41-A

Chain h:

M1

�R2

A3

�

R6

�K7

�K8

R9

�T10

R11

�R12

�L13

�K14

�R15

K16

�R17

�R18

�K19

�V20

�R21

�A22

�R23

�S24

�K25

�

• Molecule 38: Eukaryotic translation initiation factor 1A

Chain i:

MET

G2

�K3

�K4

�N5

�T6

�K7

�G8

�

R13

R14

G15

K16

�N17

�D18

�S19

�D20

�G21

�P22

K23

�R24

E25

�L26

�

E31

�

E34

T39

N44

D53

�

R66

I77

L78

V79

R82

D87

�

D90

V91

V92

A100�

E108�

L109

P110�

E111�

N112

A113�

K114�

I115�

N116�

E117�

T118�

D119�

N120�

F121�

G122�

PHE

GLU

SER

ASP

GLU

ASP

VAL

ASN

PHE

GLU

PHE

GLY

ASN

ALA

ASP

GLU

ASP

ASP

GLU

GLU

GLY

GLU

ASP

GLU

GLU

LEU

ASP

ILE

ASP

ASP

ILE

• Molecule 39: Eukaryotic translation initiation factor 2 subunit alpha

Chain j:

MET

SER

T3

�S4

�H5

�C6

R7

F8

�Y9

E10

�N11

K12

�

I16

�D17

�D18

�I19

�V20

M21

�

Q26

�I27

�A28

�E29

�M30

�

Y33

�V34

K35

�L36

�L37

�E38

�Y39

D40

N41

�I42

�E43

�G44

M45

�I46

L47

L48

S49

�E50

�L51

S52

�R53

�R54

�R55

�I56

�R57

�S58

�

K61

�L62

�I63

�R64

�V65

�G66

�


V70

�A71

�V72

V73

�L74

R75

�

K78

�E79

�K80

�

I83

�D84

�L85

S86

K87

R88

�R89

�V90

�S91

�S92

�E93

�D94

�I95

�I96

�K97

�

E100�

K101�

Y102

Q103�

K106�

S110�

I111�

Y114�

C115�

A116

E117�

K118�

F119�

Q120�

I121�

P122�

L123�

E124�

Y127

I130�

P133�

L134�

S135�

R136�

K137�

F138�

G139�

H140�

A141

Y142�

E143�

A144�

F145�

K146�

L147�

S148�

I149�

I150�

D151�

E152�

T153

V154�

W155

E156�

E159�

P160�

P161�

S162

K163�

D164�

V165�

L166

D167�

E168

L169�

K170�

N171�

Y172�

I173

S174�

LYS

ARG

LEU

THR

PRO

GLN

ALA

V182�

K183�

I184�

R185�

A186�

D187�

V188�

E189�

V190�

S191�

C192�

F193�

S194�

Y195�

E196�

G197�

I198�

D199�

A200�

I201

K202�

D203�

A204�

L205

K206�

S207�

A208�

E209�

D210�

MET

SER

THR

GLU

GLN

MET

GLN

V218�

K219�

V220�

K221�

L222�

V223�

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• Molecule 44: Eukaryotic translation initiation factor 3 subunit B

Chain p:

MET

LYS

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GLU

THR

LYS

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LYS

VAL

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• Molecule 45: eIF3c,eIF3c

Chain q:

UNK

UNK

UNK

UNK

UNK

UNK

UNK

UNK

UNK

UNK

UNK

UNK

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UNK

UNK

UNK

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full wwpdb em validation report o i · 2020. 12. 6. · page 2 ullf wwpdb em alidationv report...

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