genetic and molecular อ.สู้3.1 x 109 bp in mitochondria 16,569 bp gene coding sequences...
TRANSCRIPT
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Genetic Disorders and Molecular Diagnosis
นายแพทย ดร. ณตพล ศุภณัฐเศรษฐกุล
ภาควิชาพยาธิวิทยา และนิติเวชศาสตร
คณะแพทยศาสตร มหาวิทยาลัยนเรศวร
Email : [email protected]
http://www.uga.edu/srel/kidsdoscience/images/genetics-puppets.gif http://www.uwo.ca/biology/images/undergraduate/chromosome.jpg 13 กันยายน พ.ศ. 2554
Topics
The Role of Genetics in Medicine Genes and Chromosomes Genetic disorders
Single gene disorders Chromosomal disorders
Polygenic or multifactorial diseases Somatic cell genetic disorders
Clinical genetics and Molecular Diagnosis Genetic testing for carrier detection Prenatal diagnosis Newborn screening Molecular diagnosis Genetic counseling
Topics
The Role of Genetics in Medicine
First report in human genetics : Jewish report on hemophilia and gender transmission In 1865, Mendel published his work In 1956, the correct chromosome number was reported In January 1959, the chromosomal abnormality associated with clinical disorders was ever reported Mapping of genes to chromosomes and specific chromosome region, abnormal gene functions
http://ghr.nlm.nih.gov/handbook/illustrations/chromosomallocation.jpg
Genes and Chromosomes
Structure of DNA Central dogma Chromosomes Gene Cell cycle and cell divisions :
mitosis meiosis
Mutation
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Structure of DNA
http://academic.brooklyn.cuny.edu/biology/bio4fv/page/molecular%20biology/16-05-doublehelix.jpg
“Central Dogma”
DNA RNA Protein
Translation Transcription
Replication
Chromosomes
http://infohost.nmt.edu/~klathrop/DNA%20Coiling.jpg
Human Genome (chromosomes)
In Nucleus 3.1 x 109 bp
In Mitochondria 16,569 bp
Gene
Coding Sequences
(Exon)
Non coding Sequences
(Intron)
Non-gene (Extragenetic)
Repetitive DNA
Tandem repeats (satellite, minisatellite, microsatellite)
Interspersed repeats (SINES, LINES)
Non repetitive DNA
10% 90%
<10% >90% 50% 50%
Cell cycle
http://www.cbp.pitt.edu/faculty/yong_wan/images/main_cell_cycle.jpg
http://ghs.gresham.k12.or.us/science/ps/sci/soph/cells/cycle/cycle.gif
Cell division
Mitosis Meiosis and gametogenesis Crossing over
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http://www.uhh.hawaii.edu/~ronald/392/Mitosis.JPG
http://www.mun.ca/biology/desmid/brian/BIOL2060/BIOL2060-20/2010.jpg
Mutation หมายถึงกระบวนการที่กอใหเกิดการเปลี่ยนแปลง
ทุกรูปแบบ ที่เกิดขึ้นกับโมเลกุลของ DNA
“Wild type” and “mutant allele” Normal variation, polymorphism, inherited disease Types of mutation
Base substitution => silent mutation, missense, nonsense Insertion => frameshift mutation Deletion => frameshift mutation Chromosomal abnormality
http://www.layevangelism.com/bastxbk/images/mutation.jpg
Genetic disorders
Single gene disorders
Mendelian inheritance Non-Mendelian inheritance
Chromosomal disorders Polygenic or multifactorial disorders Somatic cell genetic disorders
I. Single gene disorders
Terminology Mechanism of mutation Functional effects of mutation on protein Mendelian inheritance of single gene disorders
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Terminology Genotype = genetic constitution of an individual Phenotype = observed characteristic Homozygote = identical alleles at a given locus Heterozygote = two different alleles at a given locus Autosomes = any chromosomes other than sex chromosomes Autosomal inheritance = involve any chromosomes other than sex chromosomes Pedigree charts = to illustrate the inheritance
http://naturalsciences.sdsu.edu/ta/classes/lab2.4/trait.jpg
Terminology Locus = position of DNA sequences, or gene on a chromosome Allele = possible alternative form of a given gene
http://www.geneticsandhealth.com/wp-content/allele.jpg
http://www.genome.gov/Pages/Hyperion/DIR/VIP/Glossary/Illustration/Images/autosome.gif
http://www.geneticsandhealth.com/wp-content/pedigree%20image_1.gif
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http://www.geneticsandhealth.com/wp-content/pedigree%20image_2.gif
http://www.migeneticsconnection.org/genomics/Family%20History/pedigreeSymbols.jpg
Introduction
Single gene disorders are caused by individual mutant genes There are approximately 11,000 single gene disorders, affecting 1% of the populations Follow Mendelian patterns of inheritance
Autosomal dominant inheritance Autosomal recessive inheritance X-linked recessive inheritance X-linked dominant inheritance Y-linked (Holandic) inheritance
http://www.uic.edu/classes/bms/bms655/gfx/pedigree1.gif
Autosomal Dominant
Phenotypically expressed in homozygotes and heterozygotes for that gene There is vertical inheritance (affected child usually has an affected parent) Unaffected family members usually have unaffected partners, and they produce normal children Affected family members, usually have unaffected partners, and they produce a 1:1 ratio of normal and affected children Usually both sexes are equally affected, and they are equally likely to pass on the disease
Examples
Achondroplasia Acute intermittent porphyria Familial hypercholesterolemia Marfan syndrome Von Willebrand disease
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http://www.sciencemuseum.org.uk/on-line/genes/images/1-3-5-1-4-2-1-1-1-3-0.jpg
http://www.moondragon.org/obgyn/graphics/achondroplasiacomparison.jpg
http://www.commonwealthadoption.org/images/johnston.jpg
Achondroplasia
http://www.nhlbi.nih.gov/health/dci/images/Marfan_lowres.gif
http://www.homoeopathiker.de/homoeopathik/syphilis/bilder/marfan3.jpg
Marfan syndrome
http://www.uic.edu/classes/bms/bms655/lesson5.html
Autosomal Recessive
Expressed only in homozygotes, otherwise can be trait There is horizontal inheritance (normal parents often have more than one affected child) Affected individuals have phenotypically normal parents Affected individuals usually have unaffected partners and all their children will be carriers
If a carrier has an unaffected partner, there is a 50% chance of the children being carriers Only mating between heterozygotes will produce affected individuals, with an expected frequency of 1 in 4 There is an association with consanguinity due to sharing of genes in families (rare recessive genetic disorders are more likely to arise through consanguinity) Both sexes are equally affected and equally likely to pass the mutation to the next generation
http://upload.wikimedia.org/wikipedia/commons/thumb/3/3e/Autorecessive.svg/300px-Autorecessive.svg.png
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Example
Alpha thalassemia Beta thalassemia Congenital adrenal hyperplasia Cystic fibrosis Hemochromatosis Phenylketonuria Sickle cell disease Tay-Sachs disease
http://healthnet.md.chula.ac.th/text/forum1/thalassemia2/picture/thalassemia.jpg
http://home.kku.ac.th/acamed/kanchana/p7.jpg
http://www.microscopyu.com/galleries/pathology/images/sicklecell/sicklecellanemia40x02small.jpg
http://www.irondisorders.org/News/SickleCell.jpg
http://www.uic.edu/classes/bms/bms655/gfx/pedigree5.gif
X-linked Dominant
Rare, and difficult to distinguish from AD except that affected males have normal sons, but all daughters are affected Example : X-linked hypophosphatemic rickets, Rett syndrome
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http://www.uic.edu/classes/bms/bms655/lesson7.html#RECESSIVE
X-linked Recessive
Many more males than females show the recessive phenotype The disease is transmitted by a carrier female, who is usually asymptomatic If a mother is a carrier, her son have a 50% chance of being affected and her daughters a 50% chance of being carriers An affected male will usually have no affected offspring, but all his daughters will be carriers and, in turn, 50% of their sons will be affected No sons of the affected male will inherit the gene (there is no male-to-male transmission)
Example
Duchenne muscular dystrophy Becker muscular dystrophy Glucose-6-phosphate dehydrogenase (G6PD) deficiency Hemophilia A Hemophilia B Lesch-Nyhan syndrome
http://www.neurologyarticles.com/sitebuilder/images/Scan10106-176x315.jpg
Gower’s sign
http://medicalimages.allrefer.com/large/x-linked-recessive-genetic-defects.jpg
Duchenne muscular dystrophy
Y-linked (Holandic)
http://cas.bellarmine.edu/tietjen/HumanBioogy/Finished%20Images/gen17.gif http://cas.bellarmine.edu/tietjen/HumanBioogy/bills_developmental_abnormalities.htm
II. Chromosomal Abnormalities
Terminology Introduction Numerical Chromosome abn. Structural chromosome abn. Chromosome instability synd.
http://images.wikio.com/images/p/51ca/the-world-s-worst-genetic-mutation-in-a-dog.jpg
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Terminology Karyotype = the chromosome constitution of an individual, normal human karyotype is 46,XY (male) and 46,XX (female) Polyploidy = the number of hapoloid chromosome sets is greater than two (2n), triploidy, tetraploidy Aneuploidy = chromosome number is not an exact multiple of haploid number, monosomies, trisomies Trisomy = three representatives of a given chromosome, trisomy 21 in Down dyndrome Monosomy = one member of a chromosome pair is missing, Turner syndrome (45,X) Translocation = the transfer of one segment of a chromosome to another
http://www.asklenore.info/miscarriage/bick/images/fig3.jpg
http://www.ucl.ac.uk/~ucbhjow/bmsi/lec7_images/47_xx_21.gif
http://www.myoops.org/cocw/tufts/courses/20/content/D293242/C293223.jpg
http://www.nature.com/onc/journal/v24/n33/images/1208711f1.jpg
Spectral Karyotyping (SKY) Analysis
Introduction Maybe numerical or structural Nomenclature Numerical disorders : [47, XY,+21],
[45,X] Structural disorders : [46,XY,t(14;21)(q11,p10)],
[46,XY,dup(5) (q20-q30)], [46,XY,del(15)(q11-q13)],
(break point, margin, or region)
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Examples Autosomal disorders :
Trisomy 21 (Down syndrome) Trisomy 18 (Edwards syndrome) Trisomy 13 (Patau syndrome)
Sex chromosome disorders : Klinefelter syndrome (47,XXY) Turner syndrome (45,X)
XXX = female with an extra X chromosome XYY = male with an extra Y chromosome XX male = Y sequences are transferred to the X chromosome, look like male with Klinefelter syndrome
http://cas.bellarmine.edu/tietjen/HumanBioogy/Finished%20Images/gen30.gif
http://cas.bellarmine.edu/tietjen/HumanBioogy/bills_developmental_abnormalities.htm
http://www.virtualsciencefair.org/2004/mcgo4s0/public_html/t2/dwn_chromo.gif
http://www.robbinspathology.com/content/figure.cfm?ImageSeqNo=108200&screenWidth=1280&screenHeight=800
http://cas.bellarmine.edu/tietjen/HumanBioogy/bills_developmental_abnormalities.htm
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http://www.robbinspathology.com/content/figure.cfm?ImageSeqNo=109400&screenWidth=1280&screenHeight=800
http://cas.bellarmine.edu/tietjen/HumanBioogy/bills_developmental_abnormalities.htm
http://www.biology.iupui.edu/biocourses/n100/images/XYYMale.gif
http://modculture.typepad.com/photos/uncategorized/2007/03/14/xyy.jpg
The XYY Man is Spider Scott (Stephen Yardley), a burglar with an extra "Y" chromosome - which makes him predisposed towards crime. So when he's tapped up fresh out of prison by British intelligence to do a big job for a big price, he goes for it - which leads to a chain of events that threaten his life - and indeed other people's lives. It's one of those 70s plots that involves various secret agents from several different countries - South Africa, Rhodesia (it still existed) and China in particular.
Structural Chromosome Abnormalities
Result from breakage and limitations of DNA repair systems Mechanisms
Translocation Inversion Duplication Deletion and ring chromosome Isochromosome
http://www.robbinspathology.com/content/figure.cfm?ImageSeqNo=107050&screenWidth=1280&screenHeight=800
http://cas.bellarmine.edu/tietjen/HumanBioogy/Finished%20Images/gen30.gif
mental retardation, low birth weight, low set ears, cat-like cry
Cri du chat syndrome
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http://www.cityofhope.org/PublishingImages/Research/Shared%20Resources%20-%20Equipment/Cytogenetics%20Core%20Laboratory/abnormal_karyotype_Large.jpg
III. Multifactorial Disorders
Terminology Multifactorial disorders Threshold model of multifactorial disorders Examples of multifactorial disorders
Terminology
Polygenic inheritance : the inheritance of traits that are influenced by many genes at different loci Multifactorial disorder : disorder in which both environmental and genetic factors are important
Multifactorial Inheritance
Normal human characteristics : Blood pressure, height, finger ridges, and intelligence Congenital malformations : neural tube defects, cleft lip and palate, and congenital heart disease Common disorders of adult life : DM, Hypertension, peptic ulcer, and schizophrenia
Heritability and Environmental factors
Heritability : percentage denoting that the genetic contribution of a given disease
If heritability is high, there is a high correlation in relatives
Environmental factors : can be manipulated to reduce an individual’s susceptibility below than the threshold
Threshold model for Multifactorial disorders
http://www.uic.edu/classes/bms/bms655/gfx/figure18.gif (Tendency)
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Example
Diabetes mellitus, type I (Insulin-dependent) Essential hypertension (62% heritability) Atherosclerosis (65% heritability) Peptic ulcer (37% heritability) Schizophrenia (85% heritability) Asthma (80% heritability) Alzheimer disease
The age of expression of the major types of genetic disease
Clinical genetics and Molecular Diagnosis
Genetic testing for carrier detection Prenatal diagnosis Newborn screening Molecular diagnosis Genetic counseling
Genetic Testing for Carrier Detection
To identify asymptomatic heterozygotes for AR traits, or AD disorders that have limited penetrance or late onset Confined to small ethnic populations in which there is an anomalously high incidence of a particular disease Examples : Thalassemia, Cystic fibrosis, ADPKD, Cascade screening
Prenatal diagnosis
To assure of having unaffected children when the risk of having an affected child is unacceptably high NOT equivalent to the assurance of having normal children, It does not address all possible birth defects Noninvasive techniques : ultrasonography, maternal serum screening Invasive technique : amniocentesis, chorionic villus sampling, cordocentesis DNA analysis (PCR, Southern blot), Cytogenetic analysis
http://www.nlm.nih.gov/medlineplus/ency/images/ency/fullsize/1062.jpg
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http://www.pennhealth.com/health_info/pregnancy/graphics/images/en/19177.jpg http://www.pennhealth.com/health_info/pregnancy/graphics/images/en/19175.jpg
Cordocentesis
http://www.nlm.nih.gov/medlineplus/ency/images/ency/fullsize/19163.jpg http://www.pennhealth.com/health_info/pregnancy/graphics/images/en/19166.jpg
Chorionic villi sampling
Newborn screening
To identify treatable genetic disorders such as phenylketonuria, galactosemia, maple syrup urine disease, and congenital adrenal hyperplasia in newborn infants Dietary management is usually an early intervention to eliminate clinical symptoms that would otherwise lead to severe disability, mental impairment, or dealth Prevalence, severity of a condition, availability, effectiveness of a treatment, and cost will determine which disorder will be screened
http://www.health.state.mn.us/divs/fh/mcshn/ncfu/images/pkupath.gif
Molecular techniques DNA , RNA Extraction Gel Electrophoresis Polymerase Chain Reaction (PCR) Direct Hybridization Method
Southern blot analysis Northern blot analysis
Fluorescence In situ Hybridization (FISH) DNA Microarrays Cytogenetics
Karyotyping Spectral karyotyping (SKY analysis)
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http://www.favorgen.us/sitebuilder/images/Blood_Genomic_DNA_Mini_chart-437x463.jpg
DNA Extraction
http://oceanexplorer.noaa.gov/explorations/03bio/background/molecular/media/gel_plate_600.jpg http://universe-review.ca/I11-50-gelectrophoresis.jpg
DNA Gel Electrophoresis
Polymerase Chain Reaction (PCR)
http://www.obstbau-kompetenzzentrum.de/arbeitsbereiche/Folder.2006-11-07.1358/Thermocycler_.jpg http://www.bio.miami.edu/~cmallery/150/gene/c7.20.7.pcr.jpg
Taq DNA Polymerase
http://users.ugent.be/~avierstr/principles/pcrcopies.gif
http://images.google.co.th/imgres?imgurl=http://users.ugent.be/~avierstr/principles/pcrcopies.gif&imgrefurl=http://users.ugent.be/~avierstr/principles/pcr.html&usg=__kCFieOdf4YXbyVmdNjY2uR9bquI=&h=306&w=598&sz=14&hl=th&start=9&um=1&tbnid=3Ku-pvmv7CJ2gM:&tbnh=69&tbnw=135&prev=/images%3Fq%3Dpcr%26ndsp%3D18%26hl%3Dth%26sa%3DN%26um%3D1
Southern Blot Analysis
http://www.mmi.mcgill.ca/mmimediasampler2002/images/5no15/5no15overview.gif
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Blot Detection Method Southern blot = DNA detection (DNA probe)
Edwin Southern, Professor of Biochemistry, 1975 Northern blot = RNA detection (RNA probe) Western blot = Protein detection (Antibody) Southwestern blot = DNA binding protein (DNA probe) Eastern blot = Protein post translation modification (probe detect CHO, lipid, etc.) Dot blot (Slot blot) = Nucleotide or Protein
Fluorescent In situ Hybridization
Localized specific DNA sequences on chromosomes using fluorescent probes Fluorescence microscopy Localized specific mRNA = gene expression
http://micro.magnet.fsu.edu/primer/techniques/fluorescence/anatomy/images/fluoromicrofigure1.jpg
http://en.wikipedia.org/wiki/File:FISH_(Fluorescent_In_Situ_Hybridization).jpg
DNA Microarrays
http://img.medscape.com/fullsize/migrated/430/330/cc430330.fig2.gif http://en.wikipedia.org/wiki/File:NA_hybrid.svg
http://www.fao.org/DOCREP/003/X6884E/x6884e00.jpg
http://neurophilosophy.files.wordpress.com/2006/08/cdna-array.jpg http://farm3.static.flickr.com/2077/2034113679_ac5a5c688d_m.jpg
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http://www.virtualsciencefair.org/2004/mcgo4s0/public_html/t2/dwn_chromo.gif
Cytogenetics : Karyotyping
Spectral Karyotyping (SKY) Analysis
http://www.cityofhope.org/PublishingImages/Research/Shared%20Resources%20-%20Equipment/Cytogenetics%20Core%20Laboratory/HumanSKY_Large.jpg
Genetic Counseling
Indications for genetic counseling Information conveyed in genetic counseling
http://www.gen.vcu.edu/images/counseling.jpg
Indications for Genetic Counseling
Known or suspected hereditary disease in a patient or family Birth defects Mental retardation Advanced maternal age Family history of early onset cancer Recurrent pregnancy loss Teratogen exposure Consanguinity
Information Conveyed in Genetic Counseling
The magnitude of the risk of occurrence or recurrence The impact of the disease on the patient and the family The possibility of modification of either the impact or the risk Anticipated future development
References คัมภิรานนท, อมรา., “พันธุศาสตรมนุษย (Human Genetics), พิมพครั้งท่ี 2.” เท็กซ แอนด เจอรนัล พับลิเคชั่น, กรุงเทพมหานคร, 2546.
บุญแสง, วิชัย., และคณะ., “ลายพิมพดีเอ็นเอ..จากสารพันธุกรรมสูเทคโนโลยีพิสูจนบุคคล, พิมพครั้งท่ี 2.” สํานักงานพัฒนาวิทยาศาสตร และเทคโนโลยีแหงชาติ, ปทุมธานี, 2545. Gelehrter, T.D., Collins, F.S., Ginsburg, D., “Principles of Medical Genetics, 2nd edition.” Williams & Wilkins, Maryland, 1998.
Lamb, N.E., “Crash course : Cell Biology and Genetics.” Mosby-Elsevier, Inc., Philadelphia, 2007.
Kumar, V., et al., “Robbins and Cotran Pathologic Basis of Disease, 7th edition.” Elsevier Inc., Philadelphia, 2005.
Rimoin, D. L., editors, et al., “Emery and Rimoin’s Principles and Practice of Medical Genetics, 4th edition.” Churchill Livingstone, London, 2002, volume 1.