genetic variation in taenia solium

6
Genetic variation in Taenia solium Gillian Campbell a, * , Hector H. Garcia b , Minoru Nakao c , Akira Ito c , Philip S. Craig a a Cestode Zoonoses Research Group, Bioscience Research Institute and School of Environment and Life Sciences, Salford University M5 4WT, UK b Department of Microbiology, Universidad Peruana Cayetano Heredia, Cysticercosis Unit, Instituto de Ciencias Neurologicas, Lima, Peru c Department of Parasitology, Asahikawa Medical College, Midorigaoka-Higashi 2-1-1-1, Asahikawa 078-8510, Japan Available online 13 December 2005 Abstract Neurocysticercosis is a major zoonotic larval cestode infection that has a worldwide distribution and is of significant public health importance. Knowledge of the genetic structure of Taenia solium can be applied to the epidemiology and transmission of this disease, since genetic variants may differ in infectivity and pathogenicity. Molecular epidemiological approaches can also enable detailed studies of transmission. On a global scale, mitochondrial markers have differentiated between T. solium isolates from Asia and isolates from Africa/Latin America. Intraspecific variation in T. solium has been detected to some extent, using RAPD markers to differentiate between T. solium populations from different regions within Mexico. Markers currently available for T. solium have not been used to analyse genetic variation at the community or local level. The development of highly polymorphic markers such as microsatellites in T. solium can provide the means to examine genetic heterogeneity of tapeworm infection at the household, community and regional level. Preliminary studies suggest it is possible to analyse population genetic variation in communities using a range of polymorphic markers. D 2005 Elsevier Ireland Ltd. All rights reserved. Keywords: Taenia solium; Cysticercosis; Molecular epidemiology; Polymorphism; Population genetics; Mitochondrial DNA; Microsatellite DNA 1. Introduction The pork tapeworm Taenia solium is responsible for two important diseases in humans, taeniasis and cysticercosis and is the leading cause of non-congenital epilepsy in the developing world. Humans are the only definitive host, and pigs are the main intermediate host so there is great potential to eradicate this disease [1]. T. solium has largely been eliminated from Europe although it remains highly prevalent in endemic regions of Asia, parts of Africa and Latin America. Indeed its distribution may be spreading. In the USA T. solium may be introduced with immigrants, refugees and tourists, as demon- strated recently in New York [2], making this disease not only a concern for developing countries. Until recently genetic variation within the species T. solium was a virtually unknown phenomenon, though there has been increased interest in this area. DNA analysis of T. solium isolates from different areas of the world indicates variation between two broad geographic regions, Asia and Africa/Latin America [3]. More is known about its inter-specific variation, which has been used to differentiate T. solium from Taenia saginata and Taenia asiatica . DNA analysis has proven to have more discriminatory power than morphological character- istics [3]. Knowledge of the genetic structure of T. solium can be applied to the epidemiology and transmission of these parasites, since genetic variants may differ in their infectivity and pathogenicity. Furthermore, analysing genetic variation within and between populations can provide information about future evolutionary change, genetic differentiation and speciation [4]. As tapeworms are hermaphrodites capable of self-fertilising, their progeny are likely to be genetically identical, i.e. clones. This characteristic has a great impact on the genetic structuring of tapeworm populations. For example, self-fertilisation may depress genetic variation within popula- tions, and increase differentiation among populations [5]. Ability to differentiate clonal populations of T. solium would provide important information on the epidemiology at household, village, local and regional levels. For example, the identification of larval populations in pigs derived from the same Taenia carrier within the community is useful to evaluate transmission patterns. 1383-5769/$ - see front matter D 2005 Elsevier Ireland Ltd. All rights reserved. doi:10.1016/j.parint.2005.11.019 * Corresponding author. Tel.: +44 161 2952094; fax: +44 161 295 5210. E-mail address: [email protected] (G. Campbell). Parasitology International 55 (2006) S121 – S126 www.elsevier.com/locate/parint

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Page 1: Genetic variation in Taenia solium

sevier.com/locate/parint

Parasitology International 5

Genetic variation in Taenia solium

Gillian Campbell a,*, Hector H. Garcia b, Minoru Nakao c, Akira Ito c, Philip S. Craig a

a Cestode Zoonoses Research Group, Bioscience Research Institute and School of Environment and Life Sciences, Salford University M5 4WT, UKb Department of Microbiology, Universidad Peruana Cayetano Heredia, Cysticercosis Unit, Instituto de Ciencias Neurologicas, Lima, Peru

c Department of Parasitology, Asahikawa Medical College, Midorigaoka-Higashi 2-1-1-1, Asahikawa 078-8510, Japan

Available online 13 December 2005

Abstract

Neurocysticercosis is a major zoonotic larval cestode infection that has a worldwide distribution and is of significant public health importance.

Knowledge of the genetic structure of Taenia solium can be applied to the epidemiology and transmission of this disease, since genetic variants

may differ in infectivity and pathogenicity. Molecular epidemiological approaches can also enable detailed studies of transmission. On a global

scale, mitochondrial markers have differentiated between T. solium isolates from Asia and isolates from Africa/Latin America. Intraspecific

variation in T. solium has been detected to some extent, using RAPD markers to differentiate between T. solium populations from different regions

within Mexico. Markers currently available for T. solium have not been used to analyse genetic variation at the community or local level. The

development of highly polymorphic markers such as microsatellites in T. solium can provide the means to examine genetic heterogeneity of

tapeworm infection at the household, community and regional level. Preliminary studies suggest it is possible to analyse population genetic

variation in communities using a range of polymorphic markers.

D 2005 Elsevier Ireland Ltd. All rights reserved.

Keywords: Taenia solium; Cysticercosis; Molecular epidemiology; Polymorphism; Population genetics; Mitochondrial DNA; Microsatellite DNA

1. Introduction

The pork tapeworm Taenia solium is responsible for two

important diseases in humans, taeniasis and cysticercosis and is

the leading cause of non-congenital epilepsy in the developing

world. Humans are the only definitive host, and pigs are the

main intermediate host so there is great potential to eradicate

this disease [1]. T. solium has largely been eliminated from

Europe although it remains highly prevalent in endemic regions

of Asia, parts of Africa and Latin America. Indeed its

distribution may be spreading. In the USA T. solium may be

introduced with immigrants, refugees and tourists, as demon-

strated recently in New York [2], making this disease not only a

concern for developing countries.

Until recently genetic variation within the species T. solium

was a virtually unknown phenomenon, though there has been

increased interest in this area. DNA analysis of T. solium

isolates from different areas of the world indicates variation

between two broad geographic regions, Asia and Africa/Latin

1383-5769/$ - see front matter D 2005 Elsevier Ireland Ltd. All rights reserved.

doi:10.1016/j.parint.2005.11.019

* Corresponding author. Tel.: +44 161 2952094; fax: +44 161 295 5210.

E-mail address: [email protected] (G. Campbell).

America [3]. More is known about its inter-specific variation,

which has been used to differentiate T. solium from Taenia

saginata and Taenia asiatica. DNA analysis has proven to

have more discriminatory power than morphological character-

istics [3].

Knowledge of the genetic structure of T. solium can be

applied to the epidemiology and transmission of these

parasites, since genetic variants may differ in their infectivity

and pathogenicity. Furthermore, analysing genetic variation

within and between populations can provide information

about future evolutionary change, genetic differentiation and

speciation [4]. As tapeworms are hermaphrodites capable of

self-fertilising, their progeny are likely to be genetically

identical, i.e. clones. This characteristic has a great impact on

the genetic structuring of tapeworm populations. For example,

self-fertilisation may depress genetic variation within popula-

tions, and increase differentiation among populations [5].

Ability to differentiate clonal populations of T. solium would

provide important information on the epidemiology at

household, village, local and regional levels. For example,

the identification of larval populations in pigs derived from

the same Taenia carrier within the community is useful to

evaluate transmission patterns.

5 (2006) S121 – S126

www.el

Page 2: Genetic variation in Taenia solium

G. Campbell et al. / Parasitology International 55 (2006) S121–S126S122

2. Molecular tools

The advance of molecular techniques has helped develop-

ment of new tools and approaches in the field of parasitology,

including the taeniid tapeworms Taenia and Echincococcus

[3,6]. Molecular approaches have greatly impacted the identi-

fication and systematics of parasites, the diagnosis of infections,

epidemiology and transmission patterns, analysis of population

subdivision and the study of drug resistance and vaccine

development [7]. The first notable application of genetic

markers in parasitology was the investigation of genetic

variation in the fluke Fascioloides magna [8] and in the

nematode Ascaris [9]. Mitochondrial DNA sequence variation

revealed 42 genotypes in 62 Ascaris worms from 35 households

in 3 Guatemalan locations. Significant heterogeneity was found

among populations from different villages, but not between

families from the same village. Studies in Echinococcus spp.

have enabled discrimination between strains/genotypes (10

currently recognised for Echinococcus granulosus), and eluci-

dation of transmission cycles [10,11].

There are now many widely accessible DNA and PCR

based tools available to parasitologists and many of them have

been discussed and reviewed in detail [7,12,13]. Some of the

most commonly used markers that are referred to later in this

paper are summarised below.

2.1. Mitochondrial DNA

Mitochondrial DNA (mtDNA) sequences are frequently used

for the study of phylogenetics and population differentiation.

MtDNA sequences evolve at a faster rate than nuclear genes and

are therefore more suited for discriminating closely related or-

ganisms [14].MtDNA is considered to be the best neutral marker,

having high levels of variability that can be easily quantified

without selection pressure from the host. Cytochrome c oxidase 1

(cox1) and NADH dehydrogenase subunit 1 (nad1) genes have

been sequenced in Taenia spp. and shown that Asian Taenia

could be considered a distinct species [15,16]. Furthermore,

phylogenetic analysis using cox1 sequences have resolved the

relationship between T. solium, T. saginata and T. asiatica [17].

Cytochrome b (cob) gene has also differentiated between global

genotypes of T. solium and between T. saginata and T. asiatica

[3,18]. Moreover, the polymorphism of Echinococcus mtDNA

suggests that the genotypes G4 (horse strain) and G5 (cattle

strain) of E. granulosus should be given species status [11,19].

2.2. Nuclear DNA

The most commonly used nuclear DNA fragment is the

internal transcribed spacer (ITS rDNA) region, comprised of

ITS1 and ITS2, separated by 5.8S and flanked by 18S and 28S

rRNA genes. ITS is a multigene family with tandemly arrayed

sequence repeats and been successfully used to detect strain

variation in Echinococcus [20]. Direct sequence analysis from

nuclear genes may not be sufficiently variable. Instead comple-

mentary tools are used in addition such as PCR-RFLP, SCCP,

RAPD and microsatellite analysis (see below for details).

2.3. PCR-RFLP

Restriction fragment length polymorphism (RFLP) detects

genetic polymorphisms in amplification products from a

chosen gene that have been digested by restriction enzymes

with specific recognition sequences. If mutations in the

sequence alter these recognition sites then the resulting

digestion profile will not detect a fragment for that site.

PCR-RFLP of the ITS rDNA region has been effectively used

to discriminate between Taenia spp. [21] and to help define

strains of Echinococcus [22].

2.4. SSCP

Single-strand conformation polymorphism (SSCP) relies on

the principle that the electrophoretic mobility of single-

stranded DNA is dependent on its structure and size [23].

Single-stranded molecules take on secondary or tertiary

structures (conformations) due to self-annealing between

nucleotides within each strand. The length, location and

number of these conformations vary and are used as a measure

of differentiation. PCR-based SSCP using an appropriate target

gene demonstrated intra-specific variation amongst some

Taenia spp. using nad1 and cox1 and had potential for

studying genetic structure of taeniid cestode populations [24].

2.5. Whole genome

2.5.1. RAPD

In the analysis of random amplified polymorphic DNA

(RAPD), short primers of arbitrary sequence are used to

amplify random anonymous genomic sequences [25]. These

primers are typically 10 bases long and are available in

commercial kits. RAPD analysis detects size variation among

the fragments but is insensitive to sequence differences.

Variation is characterised simply as the presence or absence

of a fragment. RAPD has been successfully employed for a

wide range of protozoan and metazoan parasites. Some genetic

diversity has been demonstrated in T. solium using RAPD

markers [26,27].

2.5.2. Microsatellites

Avaluable and now commonly applied tool for investigating

population structure is microsatellites [28,29]. Microsatellites

consist of short tandemly repeated DNA motifs that are widely

distributed throughout most of the eukaryotic genome [30]. The

DNA repeat motif (between 2 and 5 bases) varies in number at a

given locus, often hypervariable, generated by high mutation

rates. Furthermore, high variation at microsatellite loci has been

described in species in which little genetic diversity has been

detected by other less polymorphic genetic markers, for example

Echinococcus multilocularis [31].

3. DNA polymorphism in the genus Taenia

Until recently there has been very little research into genetic

variation within T. solium , compared to the numerous

Page 3: Genetic variation in Taenia solium

G. Campbell et al. / Parasitology International 55 (2006) S121–S126 S123

investigations into E. granulosus, responsible for cystic

echinococcosis (e.g. [6,32–34]). Studies that have been done

indicate that there is little intra-specific variation in T. solium,

although it may not be the case for other taeniids. There is a

similar contrast observed between E. granulosus, for which 9–

10 different strains/genotypes have been identified, and the

relatively limited variability of E. multilocularis. The existence

of sufficient interspecific variation between T. solium, T.

saginata and T. asiatica has been used to differentiate between

these medically and economically important taxa. Indeed

phylogenetic analysis of mtDNA was able to distinguish

between T. saginata and T. asiatica and place them in a

separate clade to T. solium [17].

3.1. Intraspecific variation in T. solium

MtDNA markers have demonstrated little or no genetic

variability amongst T. solium. Evidence from cox1, cob and

nad1 sequences suggests that there is limited variability

amongst isolates from different countries. Southern blot

hybridisation demonstrated the first intra-specific sequence

variation between cysts of T. solium from India, Zimbabwe and

Mexico, although variability was not detected among the 6

isolates from India [35]. The short sequences of cox1 and nad1

revealed that the variation amongst T. solium isolates was

significantly less than the variation observed between species

[16,36]. However, variation was detected within 5 isolates of

Taenia taeniaeformis [36] (Table 1).

Analysis of the nad1 gene detected greater interspecific

variation for Taenia spp. than for the cox1 gene, and this gene

may have potential for determining population genetic structure

in the family Taeniidae [16]. Intraspecific variation was detected

amongst 7 Polish isolates of Taenia hydatigena using the nad1

gene [37]. In contrast, the cox1 gene was identical for 15 isolates

from Peru, even between regions as diverse as the jungle in

northeast and the southern highlands [38]. Moreover, cox1

sequences demonstrated little variation between Latin American

isolates of T. solium fromMexico, Columbia and Peru with only

Table 1

Summary table of the genetic variation detected within Taenia solium to date,

showing the number of isolates, the molecular marker, the method used,

polymorphism at the international and national level, and the reference

No. of

isolates

Molecular marker Method Polymorphisma Reference

International National

cDNA Hybridisation Yes No [35]

Cox1 Sequence Yes N/A [15]

Cox1 Sequence Yes N/A [36]

ND1 and Cox1 Sequence Yes N/A [16]

ND1 and Cox2 SSCP Yes N/A [24]

18 ITS 1 and 2 PCR-RFLP No No [39]

15 Cox1, ITS and Ts14 Sequence No No [38]

Cox1 and Cytb Sequence Yes No [18]

ITS 1 and 2 PCR-RFLP No N/A [40]

13 Cox1 and Cytb Sequence Yes No [3]

160 RAPD PCR Yes Yes [26]

90 RAPD PCR Yes Yes [27]

a Polymorphism measured between isolates between countries and within the

same country.

1 to 4 nucleotide changes differentiating them, although isolates

from India, China and the Philippines were unique [18].

In contrast, PCR-RFLP analysis of the complete ITS region

revealed no intraspecific variability within T. solium isolates,

despite this gene usually detecting intraspecific variation

amongst many species [39,40]. Intraspecific variation was

however detected amongst T. saginata isolates [40].

3.2. Global variation in T. solium

Recent phylogenetic analysis of complete sequences of cox1

and cob genes from 13 worldwide T. solium isolates suggests

that there are 2 distinct genotypes in T. solium, which

correspond to either an Asian or Latin American/African origin

isolate [3,18]. There have been conflicting theories regarding

the origin of T. saginata and T. solium and when humans

acquired this tapeworm. Polymorphism that is restricted to the

geographic origin of T. solium provided evidence to support the

theory that Taenia in humans predates the development of

agriculture, animal husbandry including the domestication of

pigs and cattle [41,42]. This contradicts previous suggestions

that humans acquired Taenia with the domestication of cattle

and pigs alongside the coincidental dissemination and coloni-

sation of humans, approximately 10,000 years ago (e.g.

[43,44]). Divergence of these 2 genotypes was estimated

following Despres and others [45] at 0.4–0.8 MYA for the

cox1 gene and 0.8–1.3 MYA for the cob gene, using the

divergence rate between mouse and rat of 9–12 MYA [46].

This would indicate that intraspecific variation occurred in T.

solium before the domestication of cattle and pigs [3].

The different origins for T. solium from China or Latin

America/Africa differentiate this species into the 2 genotypes

observed. However, variability amongst African and Latin

American isolates is lower than it is amongst isolates from

China [2,18]. Both cox1 and cob have identical sequences

between several paired locations in Africa and Latin America,

despite not being geographically close, suggesting that the

isolates were introduced recently. However, to date isolates

from China show rather limited sequence variation [18].

Sequence divergence amongst Asian isolates (0.1–0.8%)

reflects minor changes that occurred in different regions in

Asia, whereas low sequence divergence amongst Latin Amer-

ican isolates (0–0.6%) may be caused by introductions from

different regions of Europe [3]. This supports the speculation

that T. solium was introduced into Latin America and Africa

from Europe during the colonial period about 500 years ago and

that T. solium of another origin spread independently in Asia

[3]. The Asian T. solium genotype may have emerged in the

southern region of China where domestication of pigs started

independently from Europe [47].

The broad genetic differentiation in T. solium correlates well

with the clinical variation of patients with cysticercosis. Disease

manifestations due to neurocysticercosis (NCC) vary depending

upon the location, growth, size, number of cysts, and the

viability of lesions, stage of cyst degeneration and presence of

calcifications [48]. Cysticercosis in the muscle, subcutaneous,

eye and other tissues/organs, is referred to as extraneuronal or

Page 4: Genetic variation in Taenia solium

G. Campbell et al. / Parasitology International 55 (2006) S121–S126S124

subcutaneous cysticercosis (SCC). In Latin America patients are

usually found predominantly with NCC, whereas in Asia

subcutaneaous cysticercosis is quite common and NCC usually

coincides with SCC. In Africa however the situation is far more

complicated with SSC rare in some regions, while in others

NCC and SCC occur as common as in Asia [47].

3.3. Population genetic analysis of T. solium

The population genetic structure of T. solium was examined

in Madagascar and Mexico [27]. Using RAPD markers, 49 out

of 113 loci (43%) were polymorphic between T. solium cysts

from the two countries. Nei and Li’s genetic distance was

measured at 0.2 [27]. The genetic distance dropped to 0.05

between central (CE) and southeastern (SE) Mexico, and

among 3 regions within CE Mexico genetic distance ranged

from 0 to only 0.01. Population genetic analysis showed low

genetic differentiation among the 3 localities in CE Mexico,

whereas there was higher genetic differentiation between

Mexico and Madagascar. Genetic differentiation was also high

both within and among individuals from CE and SE Mexico

due to the great geographic distance, resulting in little contact

between T. solium from these regions. Low gene flow can be

attributed to the low levels of migration of human carriers and

pig commerce between countries and between regions in

Mexico [27]. These authors also suggested this significant

variation between Mexico and Madagascar may effect host

preference and explain the differences in prevalence of NCC

and SCC between the two countries.

A very similar study investigated genetic variability in T.

solium from 3 regions in Mexico, Honduras and Tanzania [26].

Out of 49 RAPD loci, 88% were polymorphic in the 160 cysts

examined from 6 pigs. Variation was detected among and

within isolates with several fixed alleles in each, likely to have

been caused by genetic drift and inbreeding effects in the

hermaphrodite worm while in the definitive host. The

observation of genetic variability between 2 isolates from the

same community in Morelos, Mexico [26] is of interest to those

looking for variation at the community level.

So far, population genetic data from RAPD and the ITS

genes proves that genetic variation does indeed exist in T.

solium, suggesting it may have a role in variation in disease

presentation due to self- or cross-fertilisation [26]. This genetic

variability has important epidemiological implications, such as

the development of the parasite, its pathogenicity and drug

susceptibility. For instance, variation in populations of E.

granulosus has contributed to the identification of different

strains and helped elucidate transmission patterns.

3.4. Comparative studies in E. multilocularis

As with T. solium, little variation has been detected within

the worldwide population of E. multilocularis with the genetic

markers so far used. ITS1 and ITS2 sequences between 9

isolates from 5 German states were identical and even between

Germany, Japan and Alaska there was only one polymorphic

site [49]. The authors claimed this high degree of genetic

conservation in ITS1 and ITS2 contrasted with previous studies

where greater variability had been detected in other Echino-

coccus species. Development of more sensitive molecular tools

such as microsatellites and single nucleotide polymorphisms

(SNPs) that can detect genetic variation in small populations

may be required [50]. Recently, 2 microsatellites of trinucle-

otide motif FCAC_ type were developed in E. multilocularis,

detecting a total of 6 alleles that differentiated between

heterozygotes and homozygotes [31]. This paper is of interest

to those seeking to measure genetic variation in T. solium. It

shows that microsatellites are useful for population-level

polymorphisms even within a limited region where previously

mtDNA markers demonstrated limited variability [3]. Further-

more, a microsatellite fragment was isolated in E. multi-

locularis that detected 11 genotypes and was sensitive enough

to differentiate between Alaskan and European E. multi-

locularis isolates and also amongst European isolate clusters

[51]. From this new evidence in E. multilocularis, it is hopeful

that other, more sensitive markers can detect polymorphisms in

T. solium at a local population level.

4. Future prospects

Preliminary work has identified several molecular markers

from mtDNA for SNPs and PCR-RFLP, and microsatellites in

T. solium (Campbell et al., unpublished). These markers will be

utilised in analysing population genetic variation in T. solium

isolates from communities in Peru, Mexico and China. DNA

polymorphism has been detected between a panel of Peruvian

T. solium isolates using the three markers: 1) PCR-RFLP of the

gene region cob detected 4 alleles amongst the isolates; 2) One

optimised FCAC_ repeat loci detected 2 genotypes amongst the

isolates tested. A further 9 microsatellite loci have yet to be

tested; 3) SNP’s from atp6, cox2, cox3, and nad2 sequences

detected at least 4 genotypes amongst isolates.

Molecular techniques such as these can provide the much-

needed epidemiological data regarding the transmission of

taeniasis/cysticercosis in Asia, Africa and Latin America.

Examining genetic heterogeneity of tapeworm infection at the

family/household, community and eventually at geographical/

regional levels will help determine human exposure and

transmission patterns in endemic regions. More specifically it

may help address questions such as whether there is a single

tapeworm clone or several clones transmitted within a commu-

nity, where they originate, if the same clones reappear post-

treatment, and whether there are any spatial patterns to clone

presence regarding household and/or pig clusters.

Acknowledgements

Collection of samples from Peru was part of a collaborative

grant from the Burroughs Wellcome. Molecular analysis of

Taenia solium was also undertaken at Asahikawa Medical

College, Japan, funded in part by a Royal Society Japan–UK

Joint Project Grant (ref: 16362) and by a Grant-in-Aid for

International Collaboration Research from the Japan Society

for Promotion of Science (14256001, 17256002) to A. Ito.

Page 5: Genetic variation in Taenia solium

G. Campbell et al. / Parasitology International 55 (2006) S121–S126 S125

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