gi pathogen profile, multiplex pcr - doctor's data · certain pathogenic bacterial and...

16
GI Pathogen Profile, multiplex PCR RESOURCE GUIDE Science + Insight doctorsdata.com

Upload: others

Post on 08-Jun-2020

3 views

Category:

Documents


0 download

TRANSCRIPT

Page 1: GI Pathogen Profile, multiplex PCR - Doctor's Data · Certain pathogenic bacterial and parasitic infections may require antimicrobial treatment, while other infections warrant rehydration

GI Pathogen Profile, multiplex PCR RESOURCE GUIDE

Science + Insight

doctorsdata.com

Page 2: GI Pathogen Profile, multiplex PCR - Doctor's Data · Certain pathogenic bacterial and parasitic infections may require antimicrobial treatment, while other infections warrant rehydration

Doctor’s Data, Inc. GI Pathogen Profile, multiplex PCR Resource Guide 1

www.doctorsdata.com

GI Pathogen Profile, multiplex PCRViruses, parasites, and bacteria—now you can receive 22 results with 1 test.

The GI Pathogen Profile, using the FilmArray multiplex PCR system, tests for 22 Viruses, parasites, and bacteria, and offers new opportunities for the rapid, accurate diagnosis and prompt treatment of diarrheal illnesses which may improve patient outcomes and clinical success.

While bacteria and parasites are the primary cause of food and water-borne diarrheal illness (48 million infections/year), the vast majority of acute diarrheal illness is caused not by bacteria or parasites, but by viral infections. In fact, Norovirus is the primary gastrointestinal infection occurring in the United States. Even though testing for pathogenic bacteria and parasite is commonly available, there has been limited availability of viral testing until recently.

Acute gastroenteritis may contribute to patient morbidity and even mortality, if the illness progresses to severe dehydration. Also, the identification of reportable diseases is imperative to prevent large outbreaks, especially for highly contagious or food-borne illnesses, and many gastrointestinal illnesses have very simi-lar clinical presentations.

If your patient has diarrheal illness, you need accurate results quickly. Most GI Pathogen Profile, multiplex PCR results can be provided within one business day of sample receipt with up to 98.5% overall sensitivity and 99.3% overall specificity. As a result, you can begin targeted treatment immediately, for greater therapeutic efficacy and reduced risk of complications and side effects associated with incorrect treatment or unwarranted antimicrobial administration. Rapid diagnosis allows for better treatment decisions, as antimicrobial agents have no effect on viral illness, and the indiscriminate use of antibiotics may increase bacterial resistance. Certain pathogenic bacterial and parasitic infections may require antimicrobial treatment, while other infections warrant rehydration and supportive therapies. Knowing the difference allows the treating physician to practice good antimicrobial stewardship.

Use the GI Pathogen Profile, multiplex PCR as a stand-alone test, or as a complement to our Comprehensive Stool Analysis, to test for the presence of viral infections or to differentiate between possible diarrheagenic strains of E. coli.

© 2016 Doctor’s Data, Inc. All rights reserved.

Page 3: GI Pathogen Profile, multiplex PCR - Doctor's Data · Certain pathogenic bacterial and parasitic infections may require antimicrobial treatment, while other infections warrant rehydration

Doctor’s Data, Inc. GI Pathogen Profile, multiplex PCR Resource Guide 2

www.doctorsdata.com

Multiplex PCR Technology

The GI Pathogen profile is performed using the FDA-cleared FilmArray multiplex PCR system. First, the FilmArray extracts and purifies all nucleic acids from the unprocessed sample. Next, the FimArray performs a nested multiplex PCR. During the first stage, the system performs a single, large volume, multiplexed reaction. Finally, individual, singleplex second-stage PCR reactions detect the products from the first-stage PCR. Using endpoint melting curve data, the FilmArray software automatically generates a result for each target.

It should be noted that PCR testing is much more sensitive than traditional techniques and allows for the detection of extremely low numbers of pathogens. This may cause the detection of clinically insignificant of pathogens in healthy patients. PCR testing does not differentiate between viable and non-viable patho-gens and should not be repeated until 21 days after completion of treatment or resolution to prevent false positives. PCR testing can detect multiple pathogens in the patient’s stool but does not differentiate the causative pathogen. All decisions regarding the need for treatment should take the patient’s complete clinical history and presentation into account.

Pharmaceutical TreatmentsPharmaceutical treatments have been compiled from the Centers for Disease Control and Prevention, Mandell, Douglas, and Bennets’s: Priniciples and Practice of Infectious Disease. Vol 2. 8th ed., The Sanford Guide to Antimicrobial Therapy, 39th ed., as of February 2016. As bacteria are continually evolving anti-microbial resistance please check the most recent pharmaceutical recommendations at http://www.cdc.gov/.

Natural/Nutritional Treatments Evidence-based natural and nutritional treatments have been compiled from peer-reviewed scientific liter-ature reporting in vitro or in vivo effects of plant preparations, minerals or probiotics. Consider potential side effects and drug interactions prior to use.

While many patients and clinicians wish to pursue natural alternatives when treating parasite infections, the University of Maryland Health Center (UMHC) notes that conventional treatments eradicate parasites more quickly and with fewer side effects. UMHC recommendations regarding natural agents may be reviewed at http://umm.edu/health/medical/altmed/condition/intestinal-parasites.

Supportive Care & Dietary ConsiderationsIn addition to the specific treatments provided, supportive care consisting of oral rehydration therapy (ORT) may be used to replace fluids and electrolytes lost due to diarrhea. Patient preferences may include soft drinks, fruit juice, broth, soup, etc. with salted crackers. Commercial rehydration/electrolyte blends are available for pediatric patients. Fluids may be given at a rate of 200 ml/kg/24 hours. If fluid loss is excessive or patient refuses ORT, intravenous fluids may be necessary to maintain hydration and electrolyte status. Very severe symptoms may occasionally require hospital support.

Patients may be allowed soft, easily digested foods as tolerated, such as bananas, applesauce, rice, pota-toes, noodles, crackers, toast or soups. Dairy products should be avoided, as transient lactase deficiency may result from illness. Caffeine and alcohol may increase intestinal motility and secretions and should be avoided during illness.

Page 4: GI Pathogen Profile, multiplex PCR - Doctor's Data · Certain pathogenic bacterial and parasitic infections may require antimicrobial treatment, while other infections warrant rehydration

Doctor’s Data, Inc. GI Pathogen Profile, multiplex PCR Resource Guide 3

www.doctorsdata.com

PATHOGEN USUAL SYMPTOMS COMMON SOURCES OF INFECTION

INCUBATION PERIOD

PHARMACEUTICAL TREATMENT FOR ADULTS; CONSULT

WITH PHARMACIST FOR PEDIATRIC

DOSING.

EVIDENCE-BASED NATURAL/NUTRITIONAL

TREATMENTS

VirusesAdenovirus F40/41

Prodrome of fever and vom-iting followed by diarrhea and abdominal pain; occasional respiratory sx. Commonly causes infant gastroenteri-tis, however asymptomatic carriage may oc-cur in children, who may shed virus.

Fecal-oral route or aero-sol droplets from respirato-ry infection.

Typically 5-8 days.

Prevent spread by cleaning environs with 1:5 bleach dilution or ultravi-olet light (serotype F40).

ORT and symp-tomatic treatment.

Antibiotics are contraindicated for viral infections.

The scientific litera-ture does not current-ly support any natural therapies for viruses. Studies indicate that zinc may reduce severity of illness.

Astrovirus Large amounts of watery diarrhea; may be followed by fever, nausea, vomiting, fatigue, loss of appetite and abdominal pain. Sx may persist in immunocom-promised.

Fecal-oral transmission via contam-inated food, water, objects. Daycare, nursing facil-ities, military barracks, ships, crowded community settings.

Typically 3-4 days.

ORT and symp-tomatic treatment.

Antibiotics are contraindicated for viral infections.

The scientific litera-ture does not current-ly support any natural therapies for viruses. Studies indicate that zinc may reduce severity of illness.

Lactobacillus casei GG and Saccharo-myces boulardii may provide moderate clinical benefit in the treatment of watery diarrhea.

Norovirus GI/GII

Acute-onset vomiting with watery, non-bloody diarrhea and abdom-inal cramps; occasionally fever, headache, muscle aches, or fatigue.

Direct contact or fecal-oral via contami-nated objects, food or water (drinking or recreational). Aerosolized vomit.

Typically 12-48 hours. Vi-rus may shed prior to presen-tation of symp-toms.

ORT and symp-tomatic treatment, including an-ti-emetics (contra-indicated in young children).

Antibiotics are contraindicated for viral infections.

The scientific litera-ture does not current-ly support any natural therapies for viruses. Studies indicate that zinc may reduce severity of illness.

Lactobacillus casei GG and Saccharo-myces boulardii may provide moderate clinical benefit in the treatment of watery diarrhea.

Page 5: GI Pathogen Profile, multiplex PCR - Doctor's Data · Certain pathogenic bacterial and parasitic infections may require antimicrobial treatment, while other infections warrant rehydration

Doctor’s Data, Inc. GI Pathogen Profile, multiplex PCR Resource Guide 4

www.doctorsdata.com

PATHOGEN USUAL SYMPTOMS COMMON SOURCES OF INFECTION

INCUBATION PERIOD

PHARMACEUTICAL TREATMENT FOR ADULTS; CONSULT

WITH PHARMACIST FOR PEDIATRIC

DOSING.

EVIDENCE-BASED NATURAL/NUTRITIONAL

TREATMENTS

Rotavirus A Non-bloody watery diarrhea, loss of appe-tite, low-grade fever, vomiting and abdominal cramping. Sx may be severe in infants, young children. Virus may shed after sx resolve.

Direct contact or fecal-oral via contami-nated objects, food or water (drinking or recreational).

Typically two days. Virus may shed prior to symp-tom presenta-tion.

ORT and symptom-atic treatment, in-cluding anti-emet-ics. Anti-emetics may be considered for children > 6 months old.

Antibiotics are contraindicated for viral infections.

The scientific litera-ture does not current-ly support any natural therapies for viruses. Studies indicate that zinc may reduce severity of illness.

Lactobacillus casei GG and Saccharo-myces boulardii may provide moderate clinical benefit in the treatment of watery diarrhea.

Sapovirus Acute-onset vomiting with watery, non-bloody diarrhea and abdom-inal cramps; occasionally fever, headache, muscle aches, or fatigue. May be severe if immunocom-promised, very young or old.

Fecal-oral transmission via contam-inated food, water, objects. Daycare, nursing facil-ities, military barracks, ships crowded community settings.

Typically 12-48 hours.

Symptomatic treatment, includ-ing anti-emetics (contraindicated in young children).

Antibiotics are contraindicated for viral infections.

The scientific litera-ture does not current-ly support any natural therapies for viruses. Studies indicate that zinc may reduce severity of illness.

Lactobacillus casei GG and Saccharo-myces boulardii may provide moderate clinical benefit in the treatment of watery diarrhea.

BacteriaCampylo-bacter (C. jejuni, C. coli, C. upsalensis)

Mild to mod-erate, often bloody, diarrhea; may include fever, cramp-ing, nausea, headache, and/or muscle pain within 2-5 days of infection.

Contaminated water, pets, food (unpas-teurized milk undercooked poultry)

Incu-bation period varies widely from 1-7 days.

Use of antibiotics controversial; may benefit children, sx > 7 days, immuno-compromised.

Azithromycin 500 mg QD x 3 days. Fluoroquinolone x 3 days, but may resist fluoroquino-lones.

ORT to prevent de-hydration. Symp-tomatic treatment of fever, muscle aches.

In vitro: Acacia nilotiac (Cam-pylobacter species isolated from sheep).

Page 6: GI Pathogen Profile, multiplex PCR - Doctor's Data · Certain pathogenic bacterial and parasitic infections may require antimicrobial treatment, while other infections warrant rehydration

Doctor’s Data, Inc. GI Pathogen Profile, multiplex PCR Resource Guide 5

www.doctorsdata.com

PATHOGEN USUAL SYMPTOMS COMMON SOURCES OF INFECTION

INCUBATION PERIOD

PHARMACEUTICAL TREATMENT FOR ADULTS; CONSULT

WITH PHARMACIST FOR PEDIATRIC

DOSING.

EVIDENCE-BASED NATURAL/NUTRITIONAL

TREATMENTS

Clostridium difficile Toxin A/B

Sx vary from asymptomatic carriage (30% of young children) to mild/moder-ate watery diar-rhea with fever and malaise to pseudomem-branous colitis with bloody diarrhea, severe abdominal pain and fever.

Occurs almost exclusive-ly after broad-spec-trum antibiotic use

Incu-bation period is widely variable and ranges from days to weeks after a course of antibiot-ics.

No treatment is necessary for asymptomatic carriers.

Anti-motility agents contraindi-cated.

Metronidazole 500 mg TID x 10-14 days for mild/mod-erate infection. Vancomycin 125 mg QID x 10-14 days.

ORT to prevent dehydration.

Co-administration of Saccharomyces bou-lardii and Lactobacil-lus rhamnosus during antibiotic therapy may reduce the risk of infection relapse.

Plesiomonas shigelloides

Sx may include fever, chills, abdominal pain, nausea and vomiting, dehy-dration, mucoid and non-bloody diarrhea. Usually self-limiting (1-2 days) in adults.

Fresh water; isolated from freshwater fish, shellfish, pets, reptiles, wild and farm animals. May contaminate recreational waters. Inter-national travel (Asia)

Typically 20-50 hours after inges-tion of contam-inated food or water.

No treatment is necessary for asymptomatic car-riers or self-limited cases.

Children or immune-com-promised with protracted illness (7-15 days) Levofloxacin 500 mg QD x 3 days Ciprofloxacine 500 mg BID x 3 days Azithromycin 500 mg QD x 3 days

Trimethoprim/sulfamethoxazole DS BID x 3 days for adults.

ORT to prevent dehydration.

In vitro extracts: Sclero-carya birrea stem bark (aqueous); Garcinia kola (methanol).

In vitro aqueous decoction: Cuminum cyminum (cumin)

Page 7: GI Pathogen Profile, multiplex PCR - Doctor's Data · Certain pathogenic bacterial and parasitic infections may require antimicrobial treatment, while other infections warrant rehydration

Doctor’s Data, Inc. GI Pathogen Profile, multiplex PCR Resource Guide 6

www.doctorsdata.com

PATHOGEN USUAL SYMPTOMS COMMON SOURCES OF INFECTION

INCUBATION PERIOD

PHARMACEUTICAL TREATMENT FOR ADULTS; CONSULT

WITH PHARMACIST FOR PEDIATRIC

DOSING.

EVIDENCE-BASED NATURAL/NUTRITIONAL

TREATMENTS

Salmonella Two types of infection:

Typhoidal — debilitating, sustained high fever and head-ache

Non-typhoidal — enterocolitis, bacteremia, endovascular infections, sep-tic arthritis or osteomyelitis

Contaminant on eggs, meats, dairy products, shellfish and produce; pro-cessed foods and pet foods. Handling of chicks, duck-lings, reptiles, kittens and hedgehogs.

Typically between 6-72 hours.

Antibiotics for uncomplicated non-typhoidal Sal-monella infection is not indicated; may increase the risk of asymptom-atic carriage up to one year.

Levofloxacin 500 mg QD x 7 days Ciprofloxacine 500 mg BID x 7 days Azithromycin 500 mg QD x 7 days Trimethoprim/sul-famethoxazole BID x 7 days.

Relapsing or immunocompro-mised patients require x 14 days.

ORT to prevent dehydration.

In vitro: Calpurnia aurea meth-anol extract; Salivia schimperi methanol extract; Azadirachta indica (neem) meth-anol extract; Allium sa-tiva aqueous extract

Vibrio cholera

Vibrio spp. (V. parahae-molyticus or V. vulnificus)

Two types of infection:

Cholera — severe illness presents with profuse, “rice-water” diar-rhea, vomiting, tachycardia, dehydration, muscle cramps, restlessness or irritability.

Vibriosis —ab-dominal cramps, nausea, vomit-ing, fever and chills. Self-limit-ed illness of 3-4 days.

Consump-tion of raw or undercooked seafood. Cholera may be caused by contaminated food or water

Symp-toms usually occur within 24 hours of inges-tion.

Cholera:

Azithromycin 1 g x 1 dose

Doxycycline 300 mg x 1 dose Erythromycin may be considered for pediatric and preg-nant patients.

ORT to prevent dehydration.

Vibriosis (Vibrio Spp.):

Antibiotics not recommended for vibriosis unless patient is immu-nocompromised; treatments above may be used.

In vitro: fresh Citrus aurantifolia (lime) juice; Clitoria ternatea (methanol extract); Limonia acidissima (ethanol extract)

Page 8: GI Pathogen Profile, multiplex PCR - Doctor's Data · Certain pathogenic bacterial and parasitic infections may require antimicrobial treatment, while other infections warrant rehydration

Doctor’s Data, Inc. GI Pathogen Profile, multiplex PCR Resource Guide 7

www.doctorsdata.com

PATHOGEN USUAL SYMPTOMS COMMON SOURCES OF INFECTION

INCUBATION PERIOD

PHARMACEUTICAL TREATMENT FOR ADULTS; CONSULT

WITH PHARMACIST FOR PEDIATRIC

DOSING.

EVIDENCE-BASED NATURAL/NUTRITIONAL

TREATMENTS

Yersinia en-terocolitica

Acute diarrhea (bloody in severe cases), low-grade fever, abdominal pain, and sometimes vomiting. Pain may localize to RLQ similar to appendicitis.

Contaminated water, raw or undercooked pork and raw or unpas-teurized milk products.

Typically 4-6 days.

Anti-motility agents contraindi-cated.

Antibiotics not rec-ommended unless patient is immuno-compromised.

Doxycycline 100 mg IV BID + tobra-mycin or gentami-cin 5 mg/kg/day.

Essential oils in vitro: Origanum syriacum (Syrian oregano); Thymus syriacus Boiss; Syzgium aromaticum (clove); Cinnamomum zeylanicum (true cin-namon)

ParasitesCryptosporid-ium

Watery diarrhea with occasional mucous, fever and crampy abdominal pain which lasts from five days to two weeks. Diarrhea and more severe sx may persist in immunocom-promised.

Contami-nated water (recreational or drinking), or by contact with infected animals (mam-mals, birds, reptiles).

Gallbladder and billiary tract may be infected in immunocom-promised.

Typically 7 days.

Antibiotics may be considered for prolonged illness or immunocom-promised. Consider infectious disease consult.

Antimotility agents and/or nitazoxa-nide 500mg BID x 3 days.

Nutritional support may include ORT and lactose-free diet. Symptomatic treatment of fever.

Animal studies indi-cate that probiotics Lactobacillus reuteri or L. acidophilus reduced oocyte shedding.

No specific herbal parasiticides listed in scientific litera-ture. Herbs may be considered or used adjunctively, based on historical uses.

Page 9: GI Pathogen Profile, multiplex PCR - Doctor's Data · Certain pathogenic bacterial and parasitic infections may require antimicrobial treatment, while other infections warrant rehydration

Doctor’s Data, Inc. GI Pathogen Profile, multiplex PCR Resource Guide 8

www.doctorsdata.com

PATHOGEN USUAL SYMPTOMS COMMON SOURCES OF INFECTION

INCUBATION PERIOD

PHARMACEUTICAL TREATMENT FOR ADULTS; CONSULT

WITH PHARMACIST FOR PEDIATRIC

DOSING.

EVIDENCE-BASED NATURAL/NUTRITIONAL

TREATMENTS

Cyclospora cayetanensis

Watery, explo-sive diarrhea with abdomi-nal cramping, bloating and gas; nausea, prolonged fatigue, weight loss and loss of appetite; occa-sional vomiting or low-grade fever. Sx may last for months, be recurrent, or occasional asymptomatic carriage.

Contaminat-ed water or imported food (fresh fruits, herbs or vege-tables).

International travel (tropics or sub-trop-ics); may resist chlorine or iodine water treatments.

Typically 7 days.

Treat symptomatic patients. Consider infectious disease consultation if the patient is immuno-compromised.

Trimethoprim/sul-famethoxazole BID x 7-10 days.

ORT to prevent dehydration. Symptomatic treat-ment of fever and muscle aches.

No specific herbal parasiticides listed in scientific litera-ture. Herbs may be considered or used adjunctively, based on historical uses.

Entamoeba histolytica

Gradual onset of loose stools and abdominal discomfort.

May progress to amebic dysentery with bloody stools, severe abdom-inal pain, fever, and elevated fecal lysozyme. Occasional asymptomatic carriage.

Fecal-oral via contaminated food or water. Immigrant populations. International travel (Mexico, China, and SE Asia).

Typical-ly 2-4 weeks; up to one year.

Steroids are contra-indicated and may exacerbate sx.

Metronidazole 500 mg TID x 7-10 days or Tinidazole 2 g QD x 3 days OR Nitazoxanide 500 mg BID x 3 days followed by paro-momycin 25 mg/kg/day in 3 divided doses x 7 days

ORT and symp-tomatic treatment of fever.

No specific herbal parasiticides listed in scientific litera-ture. Herbs may be considered or used adjunctively, based on historical uses.

Page 10: GI Pathogen Profile, multiplex PCR - Doctor's Data · Certain pathogenic bacterial and parasitic infections may require antimicrobial treatment, while other infections warrant rehydration

Doctor’s Data, Inc. GI Pathogen Profile, multiplex PCR Resource Guide 9

www.doctorsdata.com

PATHOGEN USUAL SYMPTOMS COMMON SOURCES OF INFECTION

INCUBATION PERIOD

PHARMACEUTICAL TREATMENT FOR ADULTS; CONSULT

WITH PHARMACIST FOR PEDIATRIC

DOSING.

EVIDENCE-BASED NATURAL/NUTRITIONAL

TREATMENTS

Giardia duodenalis (aka lamblia, intestinalis)

Diarrhea, gas, abdominal cramping, nau-sea, dyspepsia and floating, greasy stools. May progress to chronic diarrhea and lactose intolerance. May be asymptomat-ic carrier.

Contaminated food or water (recreational or drinking water); may resist chlorine disinfection. Handling dogs, cats, cattle, deer and beaver. International travel. Daycare via fecal-oral transmission. Outdoor activ-ities – hiking, camping.

Typically 7 days.

Tinidazole 2 g x 1 dose

Nitazoxanide 500 mg PO BID x 3 days

Metronidazole 500 mg TID x 5-7 days

ORT to prevent dehydration.

Avoid dairy and remain dairy-free for several months after sx abate.

Lactobacillus john-sonii (LA1) (in vitro). Lactobacillus casei MTCC 1423 (animal studies).

Saccharomyces bou-lardii may enhance eradication when used with metronida-zole.

No specific herbal parasiticides listed in scientific litera-ture. Herbs may be considered or used adjunctively, based on historical uses.

Page 11: GI Pathogen Profile, multiplex PCR - Doctor's Data · Certain pathogenic bacterial and parasitic infections may require antimicrobial treatment, while other infections warrant rehydration

Doctor’s Data, Inc. GI Pathogen Profile, multiplex PCR Resource Guide 10

www.doctorsdata.com

PATHOGEN USUAL SYMPTOMS COMMON SOURCES OF INFECTION

INCUBATION PERIOD

PHARMACEUTICAL TREATMENT FOR ADULTS; CONSULT

WITH PHARMACIST FOR PEDIATRIC

DOSING.

EVIDENCE-BASED NATURAL/NUTRITIONAL

TREATMENTS

Escherichia coli

Multiple “pathotypes” of diarrheagenic E. coli and Shigella, which differ in disease mechanism, clinical presentation and severity of illness.Enteroaggre-gative Escherichia coli (EAEC)

Watery, mucoid, usually non-bloody diarrhea free of poly-morphonuclear leukocytes, and possibly low grade fever. May elevate fecal lactoferrin.

International travel; pe-diatrics (in developing countries).

E. coli may occasionally infect gallblad-der or ducts.

Incu-bation periods may be as short as eight hours; typically 16-72 hours.

Anti-motility agents are con-traindicated in children.

Antibiotics may be considered in immunocompro-mised or if > 4 stools daily, pus in stool, or fever; may shorten the dura-tion of the diarrhea by 24-36 hours.

Levofloxacin 500 mg QD x 3 days

Ciprofloxacine 500 mg BID x 3 days

Rifaximin 200 mg TID x 3 days

Azithromycin 1 g x 1 dose or 500 mg QD x 3 days

ORT to prevent de-hydration. Symp-tomatic treatment of fever.

Essential oils in vitro: Pinus sylvestris (pine), (Thymus officinalis) thyme, Melaleuca alternifolia (tea tree), Coriandrum sativum (coriander seed), Cymbopogon citrates (lemon grass), Mentha piperita (peppermint), and Melissa officinalis (lemon balm)

Extracts in vitro: Triphala churna (aqueous, ethanol, methanol); mah-sudarshan churna (ethanol); Sukshsarak churna (methanol)

Zinc decreases EAEC biofilm formation, mucosal adherence, and toxin production in vitro.

Page 12: GI Pathogen Profile, multiplex PCR - Doctor's Data · Certain pathogenic bacterial and parasitic infections may require antimicrobial treatment, while other infections warrant rehydration

Doctor’s Data, Inc. GI Pathogen Profile, multiplex PCR Resource Guide 11

www.doctorsdata.com

PATHOGEN USUAL SYMPTOMS COMMON SOURCES OF INFECTION

INCUBATION PERIOD

PHARMACEUTICAL TREATMENT FOR ADULTS; CONSULT

WITH PHARMACIST FOR PEDIATRIC

DOSING.

EVIDENCE-BASED NATURAL/NUTRITIONAL

TREATMENTS

Enteropatho-genic Escherichia coli (EPEC)

Watery diarrhea with abdominal cramps, fecal leucocytes, ele-vated sIgA.

Atypical infec-tions may result in fever, vomit-ing or persistent childhood diar-rhea. Occasional asymptomatic carriage.

Breastfeeding may be protec-tive in infants and may result in asymptomat-ic carriage.

Daycare, hos-pitals, nurs-ing homes. Contaminated food or water. International travel (Mexico, Africa)

Fecal-oral transmission; common cause of pedi-atric diarrhea.

Average incu-bation period is 12 hours.

Anti-motility agents are con-traindicated in children.

Antibiotics may be considered in immunocompro-mised or if > 4 stools daily, pus in stool, or fever; may shorten the dura-tion of the diarrhea by 24-36 hours.

Levofloxacin 500 mg QD x 3 days

Ciprofloxacin 500 mg BID x 3 days

Rifaximin 200 mg TID x 3 days

Azithromycin 1 g x 1 dose or 500 mg QD x 3 days

ORT to prevent de-hydration. Symp-tomatic treatment of fever.

Essential oils in vitro: Pinus sylvestris (pine), (Thymus officinalis) thyme, Melaleuca alternifolia (tea tree), Coriandrum sativum (coriander seed), Cymbopogon citrates (lemon grass), Mentha piperita (peppermint), and Melissa officinalis (lemon balm)

Extracts in vitro: Triphala churna (aqueous, ethanol, methanol); mah-sudarshan churna (ethanol); Sukshsarak churna (methanol)x

Page 13: GI Pathogen Profile, multiplex PCR - Doctor's Data · Certain pathogenic bacterial and parasitic infections may require antimicrobial treatment, while other infections warrant rehydration

Doctor’s Data, Inc. GI Pathogen Profile, multiplex PCR Resource Guide 12

www.doctorsdata.com

PATHOGEN USUAL SYMPTOMS COMMON SOURCES OF INFECTION

INCUBATION PERIOD

PHARMACEUTICAL TREATMENT FOR ADULTS; CONSULT

WITH PHARMACIST FOR PEDIATRIC

DOSING.

EVIDENCE-BASED NATURAL/NUTRITIONAL

TREATMENTS

Enterotoxi-genic Escherichia coli (ETEC)

Typical: Profuse, watery diarrhea (free of polymorpho-nuclear (PMN) leukocytes), and abdomi-nal cramping; occasional fever, nausea or vomiting, chills, anorexia, headache, mus-cle aches and bloating.

Severe: May resemble cholera with approximately 7 days of “rice-wa-ter” stools and dehydration.

Internation-al travel. Fecal-oral transmission; contaminated food or water.

Average incuba-tion is 40 hours.

Anti-motility agents are contra-indicated.

Antibiotics may be considered in immunocompro-mised or if > 4 stools daily, pus in stool, or fever; may shorten the dura-tion of the diarrhea by 24-36 hours.

Levofloxacin 500 mg QD x 3 days

Ciprofloxacin 500 mg BID x 3 days

Rifaximin 200 mg TID x 3 days

Azithromycin 1 g x 1 dose or 500 mg QD x 3 days

ORT and symp-tomatic treatment for fever or muscle aches.

Essential oils in vitro: Pinus sylvestris (pine), (Thymus officinalis) thyme, Melaleuca alternifolia (tea tree), Coriandrum sativum (coriander seed), Cymbopogon citrates (lemon grass), Mentha piperita (peppermint), and Melissa officinalis (lemon balm)

Extracts in vitro: Triphala churna (aqueous, ethanol, methanol); mah-sudarshan churna (ethanol); Sukshsarak churna (methanol)

Shiga-like toxin-produc-ing Escherich-ia coli (STEC)

Sx usually include severe abdominal cramps, diarrhea (progressing to bloody), and vomiting, mod-erate (< 101* F/38.5* C) fever.

Handling of ruminants (cattle, goats, sheep, deer, elk, etc.). Con-sumption of raw or unpas-teurized milk, soft unpasteur-ized cheeses, unpasteurized apple cider, undercooked meat, or contaminated water.

Sero-types vary from 10 hours-6 days.

Antibiotics and an-ti-motility agents are contraindicat-ed and increase the risk of disease progression to hemolytic uremic syndrome (HUS).

ORT to prevent de-hydration. Symp-tomatic treatment of fever.

Natural antimicrobial agents and anti-mo-tility agents are contraindicated and increase the risk of disease progression to hemolytic uremic syndrome (HUS).

Page 14: GI Pathogen Profile, multiplex PCR - Doctor's Data · Certain pathogenic bacterial and parasitic infections may require antimicrobial treatment, while other infections warrant rehydration

Doctor’s Data, Inc. GI Pathogen Profile, multiplex PCR Resource Guide 13

www.doctorsdata.com

PATHOGEN USUAL SYMPTOMS COMMON SOURCES OF INFECTION

INCUBATION PERIOD

PHARMACEUTICAL TREATMENT FOR ADULTS; CONSULT

WITH PHARMACIST FOR PEDIATRIC

DOSING.

EVIDENCE-BASED NATURAL/NUTRITIONAL

TREATMENTS

Enterohemor-rhagic Escherichia coli (E. coli O157)

Sx may include mild diarrhea, severe diarrhea, abdominal cramps; occa-sionally bloody stool, fever or vomiting.

Handling of ruminants (cattle, goats, sheep, deer, elk, etc.). Con-sumption of raw or unpas-teurized milk, untreated wa-ter, fecal-oral transmission.

Typically 2-8 days.

Antibiotics and an-ti-motility agents are contraindicat-ed and increase the risk of disease progression to hemolytic uremic syndrome (HUS).

ORT to prevent de-hydration. Symp-tomatic treatment of fever.

Natural antimicrobial agents and anti-mo-tility agents are contraindicated and increase the risk of disease progression to hemolytic uremic syndrome (HUS).

Shigella/ Enteroinva-sive Escherich-ia coli (EIEC)

Diarrhea (may be watery or bloody) with small-volume stools, fever, abdominal pain with tenesmus, fatigue and occasional vom-iting.

Contaminated food or water (recreation or drinking). Fecal-oral transmission at daycare or nursing homes facilities.

Typically 3-4 days.

Antimotility agents contraindicated.

Antibiotics may decrease course of illness by two days and may be con-sidered in immu-nocompromised or to prevent shed-ding (public health precaution).

Trimethoprim/sulfamethoxazole 160-800 mg BID x 3 days.

Levofloxacin 500 mg QD x 3 days

Ciprofloxacin 500 mg BID x 3 days.

ORT and clear liquid, lactose (dairy)-free diet may be used until symptoms resolve. Symptomatic treat-ment of fever.

Essential oils in vitro: Pinus sylvestris (pine), (Thymus officinalis) thyme, Melaleuca alternifolia (tea tree), Coriandrum sativum (coriander seed), Cymbopogon citrates (lemon grass), Mentha piperita (peppermint), and Melissa officinalis (lemon balm)

Extracts in vitro: Triphala churna (aqueous, ethanol, methanol); mah-sudarshan churna (ethanol); Sukshsarak churna (methanol)

Page 15: GI Pathogen Profile, multiplex PCR - Doctor's Data · Certain pathogenic bacterial and parasitic infections may require antimicrobial treatment, while other infections warrant rehydration

Doctor’s Data, Inc. GI Pathogen Profile, multiplex PCR Resource Guide 14

www.doctorsdata.com

ReferencesAdugna, Binyam; Terefe, Getachew; Kebede, Nigatu; Mamo, Wondu; Keskes, Simenew. (2014). Potential In vitro Anti-Bacterial Action of Selected Medicinal Plants Against Escherichia coli and Three Salmonella Species. International Journal of Microbiological Research 5 (2): 85-89, 2014.

Al-Mariri, Ayman; Safi, Mazen (2014). In Vitro Antibacterial Activity of Several Plant Extracts and Oils against Some Gram-Negative Bacteria. Iranian journal of medical sciences vol. 39 (1) p. 36-43.

Bobak DA, Guerrant RL. Nausea, vomiting, and noninflammatory diarrhea. In: Mandell GL, Bennett JC, Dolin R, eds. Mandell, Douglas, and Bennets’s: Priniciples and Practice of Infectious Disease. Vol 2. 8th ed. Philadelphia, PA: Elsevier;2014:1253-1262.

Centers for Disease Control and Prevention. 1600 Clifton Road Atlanta, GA 30329-4027, USA www.cdc.gov/ Accessed October 2015.

Cleveland Clinic Center for Continuing Education (2013). Acute Diarrhea http://www.clevelandclinicmeded.com/medicalpubs/dis-easemanagement/gastroenterology/acute-diarrhea/. Accessed 16 February 2016.

Gilbert DN, Chambers HF, Eliopoulos GM, Saag MS, eds. The Sanford Guide to Antimicrobial Therapy, 39th ed. Sperryville, VA: Antimi-crobial Therapy, Inc; 2014.

Gul, Somia; Eraj, Asma; Ashraf, Zehra. (2015). Glycyrrhiza glabra and Azadirachta indica against Salmonella Typhi: Herbal Treatment as an Alternative Therapy for Typhoid Fever. Archives of Medicine Vo. 7 No. 6:4.

Gull, Iram; Saeed, Mariam; Shaukat, Halima; Aslam, Shahbaz M; Samra, Zahoor Qadir et al. (2012). Inhibitory effect of Allium sativum and Zingiber officinale extracts on clinically important drug resistant pathogenic bacteria. Annals of clinical microbiology and anti-microbials vol. 11 p. 8.

Guerrant RL, Van Gilder T, Steiner TS, et al. Practice guidelines for the management of infectious diarrhea. Clin Infect Dis. 2001;32:331-50.

Gupta GK, Chahal J, Bhatia M. Clitoria ternatea (L.): Old and new aspects. J Pharm Res. 2010;3:2610–4.

Jayana, B.L.; Prasai, T.; Singh, A.; Yami, Kayo. (2010). Study Of Antimicrobial Activity Of Lime Juice Against Vibrio Cholerae. Scientific World, Vol. 8, No. 8, July 2010.

Masood, Nazia; Chaudhry, Ahmed; Tariq, Perween. (2008). In Vitro Antibacterial Activities Of Kalonji, Cumin And Poppy Seed. Pak. J. Bot., 40(1): 461-467, 2008.

Medeiros, Pedro; Bolick, David T; Roche, James K; Noronha, Francisco; Pinheiro, Caio et al. (2013). The micronutrient zinc inhibits EAEC strain 042 adherence, biofilm formation, virulence gene expression, and epithelial cytokine responses benefiting the infected host. Virulence vol. 4 (7) p. 624-33.

Mody RK, Griffin PM. Foodborne disease. In: Mandell GL, Bennett JC, Dolin R, eds. Mandell, Douglas, and Bennets’s: Priniciples and Practice of Infectious Disease. Vol 2. 8th ed. Philadelphia, PA: Elsevier;2014:1283-1296.

Murray PR, Baron EJ, Jorgensen JH et al. Manual of Clinical Microbiology, 9th Edition. ASM Press, Washington DC; 2007.

Raji, M.A, Adekeye, J.O, Kwaga, J.K.P2, and Bale, J.O.O. (2002). Antimicrobial Effects Of Acacia Nilotica And Vitex Doniana On The Thermo-philic Campylobacter Species. African Journal of Science and Technology (AJST). Science and Engineering Series Vol. 3, No. 2, pp. 9-13.

Seango, Christinah T. and Ndip, Roland N. (2012). Identification and Antibacterial Evaluation of Bioactive Compounds from Garcinia kola (Heckel) Seeds. Molecules 2012, 17, 6569-6584; doi:10.3390/molecules17066569.

Tablang, Michael Vincent F., MD (2014) Viral GastroenteritisMedscape http://emedicine.medscape.com/article/176515-overview Accessed 09 November 2015.

Tambekar, D H; Dahikar, S B (2011). Antibacterial activity of some Indian Ayurvedic preparations against enteric bacterial pathogens. Journal of advanced pharmaceutical technology & research vol. 2 (1) p. 24-9.

Tanih, Nicoline F; Ndip, Roland N (2012). Evaluation of the Acetone and Aqueous Extracts of Mature Stem Bark of Sclerocarya birrea for Antioxidant and Antimicrobial Properties. Evidence-based complementary and alternative medicine : eCAM vol. 2012 p. 834156.

The Bad Bug Book (2013). U.S. Food and Drug Administration 10903 New Hampshire Avenue, Silver Spring, MD 20993. www.fda.gov/downloads/food/foodborneillnesscontaminants/ucm297627.pdf Accessed 19 October 2015.

Thompson, Aiysha; Meah, Dilruba; Ahmed, Nadia; Conniff-Jenkins, Rebecca; Chileshe, Emma et al. (2013). Comparison of the antibacterial activity of essential oils and extracts of medicinal and culinary herbs to investigate potential new treatments for irritable bowel syndrome. BMC complementary and alternative medicine vol. 13 p. 338.

Travers, Marie-Agnès; Florent, Isabelle; Kohl, Linda; Grellier, Philippe (2011). Probiotics for the control of parasites: an overview. Journal of parasitology research vol. 2011 p. 610769.

University of Maryland Medical Center (2014). Intestinal Parasites. http://umm.edu/health/medical/altmed/condition/intesti-nal-parasites Accessed 15 February 2016.

Washington W, Allen S, Janda W, Koneman E, Procop G, Schreckenberger P, Woods, G. Koneman’s Color Atlas and Textbook of Diag-nostic Microbiology, 6th edition. Lippincott Williams and Wilkins; 2006. pg 395-402.

Page 16: GI Pathogen Profile, multiplex PCR - Doctor's Data · Certain pathogenic bacterial and parasitic infections may require antimicrobial treatment, while other infections warrant rehydration

3755 Illinois Avenue • St. Charles, IL 60174-2420

800.323.2784 (US AND CANADA)0871.218.0052 (UK)

+1.630.377.8139 (GLOBAL)

doctorsdata.com

Science + Insight