giessen october 9 09 nano publication
DESCRIPTION
Talk on 'nano-publication' held at EUA conference in Giessen, GermanyTRANSCRIPT
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The purpose of open access is to ensure that scientific knowledge can be used and built-upon by anyone
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Open access is a means to a goal – not a goal in itself
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What if we could freely get to all the essential knowledge contained in scientific articles, without those articles necessarily being open access?
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Nano-publicationin Science & Medicine
Jan Velterop – EUA Autumn Conference – Gießen – 9 October 2009
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Current knowledge transfer
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Current knowledge transfer
Signal to noise ratio?
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Current knowledge transfer – an analogy: needle transport
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Shouldn’t we focus on the ‘needles’ and learn how to reason with the essence of available knowledge?
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If we did, we could have:
– access to far more knowledge than now– access to knowledge in our own language
irrespective of the language it was first written in
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problemEvery has its solution
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problemEvery has itssolution
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What is needed?What do we have to do? What do we still have to overcome?
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from Term
to Concept
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42
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‘cancer’
The relations between the corners:
1. Object evokes Concept (in writer’s or speaker’s mind)2. Writer/speaker uses Token to refer to Object3. Token evokes Concept (in reader‘s or listener's mind)4. Reader/listener refers Token back to Object
The Ogden Triangle
Term (token) Object
Concept
‘cancer’Malignant NeoplasmsKrebskrankheitC0-265Etc.
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Terms – representing concepts
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CAPN3_00265
CAPN3:c.62G>A
CAPN3:p.(Gly21Glu)
dbSNP:rs28364364
C0000053
LGMD2A
nCL-1
Calpain p94
Calcium-activated neutral proteinase 3
CANP 3
Jan Velterop
Johannes Velterop
JJM Velterop
J Velterop
燕 德维尔村
Terms – representing concepts
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Terms are language-dependent
Concepts are language-independent
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from Concept
to Statement
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ConceptConceptConcept
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ConceptConceptConcept
Introducing Triples
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Statements are Concept ‘Triples’
presented
has pathogenicity
interacts with
has GO annotation
these slides
LGMD2A
SNT3
proteosome endopeptidase activity
Jan Velterop
CAPN3_00265
Dystrophin
Calpain-3
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Jan Velterop
Johannes Velterop
JJM Velterop
J Velterop
燕 德维尔村
presented
vertoonde
zeigte
présentait
显示
these slides
deze dia’s
diese Transparantien
cettes diapositives
这些幻灯片
Concept ‘Triples’ are language independent
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Annotating
Statements
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Statements are only taken seriously when they can show all, or most, of these attributes:
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authorship
context
strength of concept relation
provenance
condition
directionality
time stamp
comments
Statements are only taken seriously when they can show all, or most, of these attributes:
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Such annotated statements
are
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Such annotated statements
are
Nano-publications
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What must a publication be?
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What must a publication be?
Citeable and giving appropriate credit? – yes
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What must a publication be?
Citeable and giving appropriate credit? – yes
Valuable to scientific progress and understanding? – yes
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What must a publication be?
Citeable and giving appropriate credit? – yes
Valuable to scientific progress and understanding? – yes
Conveying knowledge? – yes
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What must a publication be?
Citeable and giving appropriate credit? – yes
Valuable to scientific progress and understanding? – yes
Conveying knowledge? – yes
Full-length? – no
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Triples Open Access
<triple><is><reference>
<reference><is><open access><reference><may be><cited><citation><benefits><author><citation><benefits><publisher>
open access triples benefit
authors and publishers, including traditional publishers
Triples Languages
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Triples Open Access
<triple><is><reference>
<reference><is><open access><reference><may be><cited><citation><benefits><author><citation><benefits><publisher>
open access triples benefit
authors and publishers, including traditional publishers
Triples Languages
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Triples Open Access
Triples Languages
International Reach
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De-PDF repository content(or at least add XML or HTML versions)
Convert literature to nano-publicationsit is cheap – current estimate ≈ ¢’s per kilo-character (≈ 1 typical research journal page)
Share nano-publications (in an open triple store)
Start with biomedical (life science) contentsimply because semantic concept methodologies are most advanced in that area
What’s to be done?