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BCMB 8130 GlycobiologyGlycosylation of Infectious
Eukaryotes Lecture 23 (4/11/17)
Chris WestBiochemistry & Molecular Biology
Davison Life Sciences B129
Trypanosoma brucei(artifically colored)
Unicellular parasites have ‘eukaryotic’ glycosylation, with specializations and deletions
Animalglycans:
Parasites utilize generally conserved ‘eukaryotic’ biosynthetic pathways
Parasitecell
MammalianHostcell
Immunecell
InvertebrateHostcell
Parasitecyst
Cell interactions of a parasite
extracellular milieu
What is the diversity of parasite glycans?
N-‐glycansO-‐glycansGPI-‐anchorsfree GIPLsanchor-‐likelipo(phosphono)glycans
other glycolipidspolysaccharides – GAG likepolysaccharide – neutral
How does glycan diversity influence parasite success?
Evolved for self functionsprotein networkscarrier protein
ArmorMimic host glycansInvasion in distinct environments and of specialized targets’Intentional’ inflammation
What is the diversity of glycan receptors (parasite or host)?
Parasite:Protein-‐glycanglycan-‐glycanHost cell: galectins, siglecsImmune cell:Innate immune – C-‐type lectins: e.g., dectins, DC-‐SIGN, interlectin
Acquired immune – vaccines?
Acanthamoeba
Phytophthora
Eukaryotic phylogeny
Type of disease Estimated human infectionsEstimated deaths per year (World Health
Report 2000)Parasitic helminths
Roundworm (Ascaris) 531 million 3,000
Schistosomiasis 200 million 14,000
Hookworms (Necator/Ancylostoma) 194 million 7,000
Whipworm (Trichuris) 212 million 2,000
Filarial worms 657 million 20,000–50,000
Pinworms or threadworms (Enterobiusvermicularis)
200 million rare
Parasitic protozoans
Malaria 300–500 million 1–3 million
Leishmaniasis 12 million 57,000
Onchoceriasis (river blindness) 18 million 270,000 (blinded)
African trypanosomiasis (sleeping sickness)
450,000 66,000
South American trypanosomiasis (Chagas’ disease)
18 million 50,000
TABLE 40.1Worldwide distribution of some major parasitic diseasesThe figures show the total number of infections worldwide (some individuals may have more than one infection) and the number of infection-related deaths per year.
Essentials of Glycobiology. 2nd edition.Varki A, Cummings RD, Esko JD, et al., editors.Cold Spring Harbor (NY): Cold Spring Harbor Laboratory Press; 2009.
Parasite CommentsAmoeba infecting humansEntamoeba histolytica causes amebic dysentery; can cause liver
abscessesIntestinal and genital flagellatesGiardia lamblia causes diarrhea; one of the most common
parasites in North AmericaTrichomonas vaginalis causes inflammation of reproductive organs;
very commonHemoflagellatesLeishmania donovani causes visceral leishmaniasis (kala-‐azar);
hepatosplenomegalyL. mexicana causes fulminating, cutaneous ulcersL. major causes cutaneous ulcersTrypanosoma brucei sp. causes sleeping sickness in humans and
nagana in cattle (African trypanosomiasis)
T. cruzi causes Chagas’ disease (South American trypanosomiasis)
Gregarines, coccidia, and related organismsPlasmodium falciparum major cause of human malariaP. vivax, P. ovale, P. malariae also cause human malaria
Causes of opportunistic infections in immunodeficiency statesToxoplasma gondii causes muscle painPneumocystis carinii causes interstitial cell pneumoniaCryptosporidium parvum intracellular parasite of intestinal cells that
causes diarrhea
TABLE 40.2Some of the major parasitic protozoans of humans
Toxoplasma gondii, agent of human toxoplasmosis
Toxoplasma proliferation and differentiation
[adapted from Sullivan and others, Euk Cell 12:161]
Tachyzoites
Toxoplasma lytic cycle
Stress
Imm
uno-
comprom
ised
Bradyzoite cysts
transmission EM
phase contrast LM
Apicomplexans: Plasmodium spp. (malaria), Toxoplasma gondii (toxoplasmosis), Cryptosporidium (diarrhea)
N-‐glycans: low frequency of N-‐sequonstruncated Man5 precursor with Glc3 terminus in T. gondiiLimited processing retaining high-‐Man characterPlasmodium: GlcNAc1-‐2-‐Asn
O-‐glycans:Minimal mucin-‐type with αGalNAc reducing end, mostly Tn? (not Plasmodium)Glcβ1,3Fucα– disaccharide on TSRs (T. gondii & Plasmodium)C-‐man on WW-‐motif of TSRs (T. gondii & Plasmodium)
Nuclear: Cytoplasmic O-‐Fuc formed by OGT-‐like Spy in nucleus (T. gondii, Cryptococcus)Nucleocytoplasmic: Hyp-‐linked complex O-‐glycan (T. gondii)
GPI-‐anchors: Glcα1-‐4GalNAcβ– side chain from canonical Man3GlcNH2Inositol core
starch, amylopectin: (4Glcα1-‐)n, with α1-‐6 branches
GalNAc-‐rich polysaccharide (cell wall): poorly characterized
Variations in N-glycosylation
Mainly due to secondary gene losses
Association of N-glycans with quality control and ERAD in the rER
Toxoplasma has no UGGT (Parodi enzyme)
Too many hexoses?
Authentic Toxoplasma glycopeptides
Novel side chain on Toxoplasma GPI anchor
Canonical GPI anchor
Applications of chemically synthesized GPI anchor
Structure-based discovery of conserved C-Man and Glc-Fuc-Thr on TSP domains
PhyA Gnt1 PgtA-N PgtA-C
Skp1 HOSkp1
OSkp1
AgtA
Dictyostelium glycan: Galα1-3Galα1-3Fucα1-2Galβ1-3GlcNAcα1-4(trans)-O-Pro143-Skp1
AgtA
OSkp1
OSkp1OSkp1OSkp1
OSkp1OSkp1Glt1
Gat1
Toxoplasma-specificGlcNAc Gal Fuc Glc
Dictyostelium-specific
Complex cytoplasmic glycosylation pathway devoted to a hydroxyproline residue on Skp1, an E3 ubiquitin ligase subunit
AAL binding to Western blots of Toxoplasma proteins is lost in KO of TgSPY. β-elimination removes the majority of O-linked fucose.
Increasing amount of protein loaded.
β-‐elimination
RH RHTgSPY KO
80
245
50
TgSPY KOFucα-Ser/Thrmonosaccharide modification
AAL binding to nuclei of Toxoplasma is lost in a stable knock out of an ortholog of Arabidopsis SPINDLY (TgSPY).
Nuclear localization of O-Fuc
Olszewski et al. BBA (2010) 1673:29
Phylogenetic relationship of Spy (O-FucT) to Sec (O-GlcNAc)
Glycan Class ToxoDB ID Gene Name Description CAZy Config Pred. localization Lourido's fitness phenotype StatusN -linked lipid-linked precursor:
TGGT1_244520 alg7 UDP-GlcNAc GlcNAc-P-T cyto -5.05TGGT1_207070 alg14 UDP-GlcNAc β4GlcNAcT GT1 Inverting cyto -2.63TGGT1_230590 alg1 GDP-Man β4ManT GT33 Inverting cyto -2.51 no mutantsTGGT1_227790 alg2 GDP-Man α3/6ManT GT4 retaining cyto -1.06TGGT1_246982 alg11 GDP-Man α2ManT GT4 retaining cyto -2.7TGGT1_262030 alg6? DPG α3GlcT1 GT57 Inverting secr -1.94 mutantsTGGT1_314730 alg8? DPG α3GlcT2 GT57 Inverting secr -0.97TGGT1_263690 alg10 DPG α2GlcT1 GT59 Inverting secr -0.84
protein-associatedi:TGGT1_231430 stt3 Putative oligosaccharyl transferase GT66 Inverting secr -3.45
GPI-anchor precursor TGGT1_241860 pigA PI α6GlcNAcT catalytic GT4 retaining cyto -5.14TGGT1_310100 pigM DPM α4ManT catalytic GT50 inverting secr -4.66TGGT1_270220 pigV DPM α6ManT, smp3 GT76 inverting secr -3.05TGGT1_321660 pigB DPM α2ManT GT22 inverting secr -3.27TGGT1_266310? βGalNAcT branch, or TGGT1_207750? GT13/17 inverting secr -1.89, -0.47 ongoingTGGT1_266320? αGlcT branch terminus GT32 retaining secr -0.99
O -linked initial (secretory) TGGT1_318730 ppαGalNAcT3 GT27 retaining secr -0.03TGGT1_256080 pp-αGalNAcT1 GT27 retaining secr 1.37TGGT1_258770 ppαGalNAcT12 GT27 retaining secr -0.07TGGT1_278518 pp-αGalNAcT5 GT27 retaining secr -1.14TGGT1_259530 pp-αGalNAcT GT27 retaining secr 1.15TGGT1_273550 POFUT2-like, GDP-Fuc O-FucT GT65 inverting secr -0.34 ongoingTGGT1_238040A LPS-modifying-like, or pp Glc/XylT GT90 inverting secr -0.53TGME49_080400 C-αManT GT98 inverting secr -2.37
Potential peripheralTGGT1_239752 Core1β3GalT-like, Fringe-like GT31 inverting secr -1.36 mutants
Polysaccharide (secretory)TGGT1_278110 3βglucan synthase component GT48 inverting cyto 0.86
O -linked (cytoplasmic)TGGT1_315885 gnt1 Skp1 pp-Hyp αGlcNAcT GT60 retaining cyto -0.58 mutantsTGGT1_260650 pgtA Skp1 βGalT/αFucT GT2/GT74 inv/ret cyto -4.15TGGT1_205060 Skp1 αGlcT, GT32a GT32 retaining cyto 0.96TGGT1_310400 Skp1 αGalT, glycogenin-like, GT8a GT8 retaining cyto 2.45 mutantsTGGT1_273500 ogt Spy-type O-linked βGlcNAcT GT41 inverting cyto -0.11 ongoingTGGT1_288390 β3GlcNAcT-like GT2 inverting cyto -1.93TGGT1_462962 β4GalT-like? GT7C inverting cyto -0.95TGGT1_217692 β4GlcAT-like GT47 retaining cyto 0.45
Cytoplasmic polysaccharideTGGT1_222800 Putative starch synthase- starch GT5/GT1 inverting cyto -0.7TGGT1_310670 α4glucan phosphorylase GT35 retaining cyto 1.01TGGT1_209960 α4glucan branching enzyme GT1/GT4 cyto -0.75TGGT1_246982 UDP-GlycosylT/glycogen phosphorylase GT1 inverting cyto -2.7
Small molecule conjugatesTGGT1_297720 otsA α,α-trehalose-phosphate synthase GT20 retaining cyto -2.89
Donor formationTGGT1_216540 alg5 Dolichyl-phosphate βGlc synthase GT2 inverting cyto -3.36TGGT1_277970 dpm1 Dolichyl-phosphate αMan synthase GT2 inverting cyto -4.37TGGT1_218200 UDP-sugar pyrophosphorylase cyto -0.92TGGT1_264780 UDP-GlcNAc pyrophosphorylase cyto -5.22TGGT1_257960 GDP-Man pyrophosphorylase cyto -4.6TGGT1_216260 TTP:Glc-1-phosphate thymidylyltransferase cyto -4.15TGGT1_274190 TTP:Glc-1-phosphate thymidylyltransferase cyto -5.07TGGT1_272640 Cytidylytransferase cyto 0.23TGGT1_225880 galE UDP-Glc 4-epimerase cyto 1.73TGGT1_229780 galactokinase, GK cyto -2.18TGGT1_286220 GDP-Man epimerase/reductase cyto 0.53TGGT1_238940 GDP-Man dehydratase cyto -0.53TGGT1_243600 GNA, GlcNH2-6-PO4 N-acetyltransferase cyto 1.41TGGT1_260140 PMI cyto -4.96TGGT1_239710 PMM cyto -2.66TGGT1_231350 GFAT, glutamine fructose-6-PO4 isomerase cyto -4.57TGGT1_264650 PAGM, phosphoacetylglucosamine mutase cyto -2.94TGGT1_265450 hexokinase cyto -1.37TGGT1_318580 PGM2, phosphoglycomutase 2 cyto 0.25TGGT1_285980A PGM1, phosphoglycomutase 1 cyto 1.18TGGT1_285980B PGM1, phosphoglycomutase 1 cyto 1.5
Xporter, sugar nucleotideTgME49_067380 nst1 UDP-GalNAc/GlcNAc transporter xmemb 0.97TgME49_054580 pred. sugar nucleotide transporter xmemb -4.9TgME49_067730 pred. sugar nucleotide transporter xmemb 1.23
Opportunities for biosynthetic and functional studies: predicted glycogenome of Toxoplasma gondii
Genome wide CRISPR/Cas9 screen for fitness reveals many glycgenes are essential for growth in mammalian fibroblast culture
Plasmodium glycome is further reduced
Parasite Stage Protein SpecificityPlasmodium falciparum
merozoite EBA-‐175 Neu5Acα2-‐3Gal/glycophorin A
merozoite EBA-‐140 sialic acid/glyco phorin B?
merozoite EBA-‐180 sialic acidsporozoite circumsporozoite
proteinheparan sulfate
Trypanosoma cruzi trypomastigote trans-‐sialidase Neu5Acα2-‐3Gal
trypomastigote penetrin heparan sulfateEntamoeba histolytica
trophozoite Gal/GalNAc lectin Gal/GalNAc
Entamoeba invadens
cyst cyst wall protein (Jacob lectin)
chitin
Giardia lamblia trophozoite taglin (α-‐1 giardin) Man-‐6-‐phosphateheparan sulfate
Cryptosporidium parvum
sporozoite Gal/GalNAc lectin Gal/GalNAc
sporozoite Cpa135 protein ?Acanthamoeba keratitis
trophozoite 136-‐kD mannose-‐binding protein
mannose
Toxocara canis larval TES-‐32 ?Haemonchus contortus
gut-‐localized galectin β-‐galactosides
TABLE 40.4Some major parasites and their glycan-recognizing proteins
Life cycle of Trypanosoma cruzi
trypomastigote amastigotes
Cellular invasion of a trypomastigote
Examples of cell surface glycoprotein activities
Trypanosomatids: Leishmania spp., T. cruzi, T. brucei, and others
N-‐glycans:Non-‐glucosylated precursors but there is the Parodi enzymeTwo Stt3 types that transfer different precursors (Man9GlcNAc2, and Man5GlcNAc2)Ill-‐defined processing to ‘complex’ forms in T. cruzi trypomastigotes: peripheral sialic
acid, sulphate, fucose, Galα1,3Gal–T. brucei processes to conventional complex with extensive branched poly-‐LacNAc arms
O-‐glycans: Complete set of mucin-‐type of up to 5-‐mers built on αGlcNAc rather than αGalNAc, by a homologous polypeptide HexNAcT. Not observed in T. brucei, but genes are.
Complex phosphodiester-‐linked glycans in T. cruzi gp72
Nuclear: Base J, Glc-‐hydroxymethyluracil in DNA
GPI-‐anchors: novel substituents
GIPLS: related to anchors
Lipophosphonoglycans: prominent in Leishmania spp.
Cell surface glycosylation in T. cruzi
‘GIPLs’
The cell surface glycome of the African trypanosome, Trypanosoma brucei, an extracellular parasite, varies from the South American trypanosome, T. cruzi.
Further variations in the trypanosomatid LeishmaniaMore glycolipids than glycoproteins
Note absence of Glc3 extension. But T. cruzi has the Parodi enzymeSome α-‐mannosidase processing after transfer to protein in epimastigotesEvidence for complex N-‐glycans in trypomastigotes – poorly characterized
NETNES: an ’extreme’ T. cruzi glycoprotein
N-glycan can substitute for a protein α-helix in VSG isoforms in T. brucei
ex Taylor & Drickamer, 2e
A. Life Cycle and cell surface glycocalyx
Thrα
β4
Thrα
β4α3
Thrα
β4
β6
GlcNAc Galp Galf Sialicacid
Thrα
β2 β4
β6
Thrα
β4α3
B. Selected O-glycan structures
f
f
catalytic domainsignal
anchor
NH2- -COOH
TcOGNT1
TcOGNT2
TcOGNTL
100 aastem
Tcα3GalT
C. Glycosyltransferases
Diversity and strain-specific variation in T. cruzi O-glycans
Novel mechanism of sialylation involves a parasite trans-sialidase
GIPLs from T. cruzi epimastigotes
Developmental regulation of GPI-anchors from T. cruzi
Epimastigotes metacyclics trypomastigotes
GJ Boons et al
Complex, phosphodiester-linked glycan on T. Cruzi GP72Located in epimastigote flagellum adhesion zone
UDP-α-Galf
UDP-α-Galp
UDP-Glc epimerase [essential] (GalE; TcCLB.506811.190)
predicted UDP-Galf transporter(s)
Galf-(N-glycan)-protein
UDP-α-Galf
βGalf-transferase(s)
Galf-(O-glycan)-protein (not CL or Y)
βGalf-transferase(s)
Galf-(GPI-anchor)-protein
βGalf-transferase(s)
Galf-(free GIPLs)
βGalf-transferase(s)
Candidates (~65):
Candidates:TcCLB.504057.120TcCLB.510611.20TcCLB.511737.70TcCLB.506753.60TcCLB.507089.40TcCLB.506579.80TcCLB.506691.22TcCLB.511353.30
Golgi lumen
UDP-Galp mutase(TcCLB.507993.160)
UDP-α-Glcp
Origin of βGalf in T. cruziglycans
Glycan Class TritrypDB ID 2nd allele Gene name Description CAZy Config Pred. localization StatusN -linked lipid-linked precursor:
TcCLB.510283.140 TcCLB.503823.104 alg7 UDP-GlcNAc GlcNAc-P-T cytoTcCLB.504071.90 alg14 UDP-GlcNAc β4GlcNAcT GT1 Inverting cytoTcCLB.508891.10 TcCLB.504215.20 alg1 GDP-Man β4ManT GT33 Inverting cyto targetTcCLB.506559.420 alg2 GDP-Man α3/6ManT GT4 retaining cytoTcCLB.506885.10 alg11 GDP-Man α2ManT GT4 retaining cyto targetTcCLB.510187.404 alg3 DPM α3ManT GT58 Inverting secrTcCLB.509429.220 TcCLB.507603.150 alg9 DPM α2ManT GT22 Inverting secr targetTcCLB.511621.60 TcCLB.509317.50 alg12 DPM α6ManT GT22 Inverting secr
protein-associatedi:TcCLB.505163.80 TcCLB.427355.10 stt3 oligosaccharyltransferase, cat. GT66 inverting secr targetTcCLB.510329.130 ggt UDP-Glc:Man αGlcT GT24 retaining secr targetTcCLB.509233.40 TcCLB.509437.80 α3/4FucT GT10 Inverting secrTcCLB.506893.90 TcCLB.508501.240 α2/3FucT GT11 Inverting secrnumerous ManI, ER-Man, EDEMs GH47 secrTcCLB_506195.120 TcCLB_506407.10 ManII,ManIIx GH38 secr
GPI-anchor precursor Tc00.1047053509215.16 TcCLB.510259.18 GPI3 pigA, PI α6GlcNAcT catalytic GT4 retaining cytoTcCLB.503909.100 TcCLB.511507.50 GPI14 pigM, DPM α4ManT catalytic GT50 inverting secrTcCLB.503521.89 GPI18 pigV, DPM α6ManT GT76 inverting secrTcCLB.503527.40 TcCLB.510299.50 GPI10 pigB, DPM α2ManT GT22 inverting secr
O -linked initial (secretory) TcCLB.511309.70 TcCLB.511759.30 TcOGNT2 pp-Thr αGlcNAcT GT60 retaining secr targetTcCLB.503511.10 TcCLB.508741.340 TcOGNT1 pp-Thr αGlcNAcT GT60 retaining secr targetTcCLB.503509.10 TcCLB.508741.360 TcOGNTL pp-Thr αGlcNAcT-like GT60 retaining secr targetTcCLB.507275.20 GlcNAc-P-T-like secr
Potential peripheralnumerous βGalf T GT40 inverting secrnumerous β3GalT,β3GlcNAcT,β2GlcNAcT GT67 inverting secrTcCLB.508461.84 α3GalT-like GT77 retaining secrTcCLB.508515.50 TcCLB.508641.160 ? GT8 retaining secrTcCLB.508677.150 TcCLB.503401.40 ? GT8 retaining secrTcCLB.508027.60 TcCLB.506633.109 ? GT8 retaining secrTcCLB.510719.220 TcCLB.509745.20 ? GT4 retaining secrTcCLB.508737.80 TcCLB.509125.10 ? GT4 retaining secrTcCLB.506627.90 EOGT, XylT, AraT? GT61 inverting secrTcCLB.510861.110 EOGT, XylT, AraT? GT61 inverting secrTcCLB.506797.40 TcCLB.511907.10 EOGT, XylT, AraT? GT61 inverting secrTcCLB.510275.90 TcCLB.510275.10 α4GlcNAcT-like GT64 retaining secr
Polysaccharide (secretory)
O -linked (cytoplasmic)TcCLB.503675.10 LPS, HyL GlcT-like GT25 inverting cytoTcCLB.506337.40 LPS, HyL GlcT-like GT25 inverting cytoTcCLB.506733.70 LPS, HyL GlcT-like GT25 inverting cytoTcCLB.511857.30 LPS, HyL GlcT-like GT25 inverting cytoTcCLB.503747.40 TcCLB.510187.10 Base J βGlcT ? inverting nuclTcCLB.510279.240 α4GlcNAcT-like GT64 retaining cyto
Cytoplasmic polysaccharide
Small molecule conjugatesTcCLB.508857.40 TcCLB.508089.20 UDP-GlcT or GlcUAT GT1 inverting secrTcCLB.510761.76 UDP-GlcT or GlcUAT GT1 inverting secr
Donor formationTcCLB.508169.60 TcCLB.506581.10 Dpm1 Dol-P-Man synthase GT2 inverting cytoTcCLB.511761.10 UDP-Glc pyrophosphorylase cytoTcCLB.504153.180 UDP-Glc pyrophosphorylase cytoTcCLB.503589.10 TcCLB.510947.10 GDP-Man pyrophosphorylase cyto targetTcCLB.503881.20 GDPMan 4,6 dehydratase cyto targetTcCLB.506359.60 TcCLB.503521.50 UTP:Glc-1-P uridylT cytoTcCLB.506811.190 GalE UDP-Gal epimerase cytoTcCLB.507993.160 Glf UDP-Galp mutase cyto targetTcCLB.508465.90 Gal-kinase cyto targetTcCLB.511641.5 put. Fuc-kinase cytoTcCLB.509111.28 TcCLB.508379.10 put. Fuc-kinase cyto targetTcCLB.511717.90 TcCLB.503677.10 Type I phosphomannose isomerase cyto
Xporter, sugar nucleotideTcCLB.504085.60 Sug. Nucl. transporter, putative xmemb targetnumerous predicted UDP-Galf & UDP-GlcNAc transporter xmembnumerous predicted UDP-Galf transporter xmembnumerous predicted UDP-GlcNAc transporter xmemb
Opportunities for biosynthetic and functional studies: predicted glycogenome of Trypanosoma cruzi
Genetic analysis challenging as some steps appear to be encoded by large gene families
Parasite Stage Protein SpecificityPlasmodium falciparum
merozoite EBA-‐175 Neu5Acα2-‐3Gal/glycophorin A
merozoite EBA-‐140 sialic acid/glyco phorin B?
merozoite EBA-‐180 sialic acidsporozoite circumsporozoite
proteinheparan sulfate
Trypanosoma cruzi trypomastigote trans-‐sialidase Neu5Acα2-‐3Gal
trypomastigote penetrin heparan sulfateEntamoeba histolytica
trophozoite Gal/GalNAc lectin Gal/GalNAc
Entamoeba invadens
cyst cyst wall protein (Jacob lectin)
chitin
Giardia lamblia trophozoite taglin (α-‐1 giardin) Man-‐6-‐phosphateheparan sulfate
Cryptosporidium parvum
sporozoite Gal/GalNAc lectin Gal/GalNAc
sporozoite Cpa135 protein ?Acanthamoeba keratitis
trophozoite 136-‐kD mannose-‐binding protein
mannose
Toxocara canis larval TES-‐32 ?Haemonchus contortus
gut-‐localized galectin β-‐galactosides
TABLE 40.4Some major parasites and their glycan-recognizing proteins
Polysaccharides of parasite cyst walls