gully apc burns, jessica a turner
DESCRIPTION
Bottom -up curation of terminology for experimental variables: the Ontology of Experimental Variables and Values ( OoEVV ). Gully APC Burns, Jessica A Turner . Science is Cyclic. Cycles of Scientific Investigation ( ‘ CoSI ’ model). ☐ ☐ ☐☐ ☐☐ ☐☐ ☐. Focus on Experimental V ariables. - PowerPoint PPT PresentationTRANSCRIPT
Bottom-up curation of terminology for experimental
variables: the Ontology of Experimental Variables and
Values (OoEVV)
Gully APC Burns, Jessica A Turner
Science is Cyclic
Cycles of Scientific Investigation (‘CoSI’ model)☐ ☐☐☐ ☐☐☐☐☐
Focus on Experimental Variables
This statistically-significant effect is the experimental basis for the findings of this study.
‘CDNF protects nigral dopaminergic neurons in-vivo’
from Lindholm, P. et al. (2007), Nature, 448(7149): p. 73-7
Cycles of Scientific Investigation (‘CoSI’ model)☐ ☐☐☐ ☐☐☐☐☐
Capturing Experimental Variables in Context
Knowledge Engineering from Experimental Design (KEfED)☐☐ ☐ ☐☐☐☐☐
http://www.bioscholar.org/
Knowledge Engineering from
Experimental Design (‘KEfED’)
Khan et al. (2007), J. Neurosci. 27:7344-60 [expt 2]
Knowledge Engineering from Experimental Design (KEfED)☐☐ ☐ ☐☐☐☐☐
OoEVV Basic Design
VariableQuality Scale
‘Handedness’
Simple-handedness-category [‘left’, ‘right’, ‘ambidextrous’]
Edinburgh-handedness-score [ -100 … +100 ]
Quality being measured
(conceptual, no encoding)
1 * * 1
Variable measuring the
quality
Mathematical encoding of the variable
Ontology of Variables and Values (OoEVV)☐☐ ☐☐ ☐☐☐☐
OoEVV Implementation
☐☐ ☐☐ ☐☐☐☐Ontology of Variables and Values (OoEVV)
Measurement Scales
☐☐ ☐☐ ☐☐☐☐Ontology of Variables and Values (OoEVV)
Software Development
☐☐ ☐☐ ☐☐☐☐Ontology of Variables and Values (OoEVV)
OoEVV Software
http://www.isi.edu/projects/ooevv/ooevv_software
☐☐ ☐☐ ☐☐☐☐Ontology of Variables and Values (OoEVV)
OoEVV Viewer
☐☐ ☐☐ ☐☐☐☐Ontology of Variables and Values (OoEVV)
Acknowledgements
BMKEG@ISIMarcelo TallisDrashti DaveEd Hovy
Biomedical Informatics Research Network (BIRN)Joe AmesJose Luis AmbiteNaveen Ashish
FundingFBIRN: RR021992 BIRN: RR025736CogPO: MH084812BioScholar: GM083871
Thank you for listening!