high performance computing at the upv/ehu. · 2013-03-20 · •charles babbage •ada lovelace...

High Performance Computing at the UPV/EHU. 1 / 69

High Performance Computing at the UPV/EHU.

Dr. Eduardo Ogando & Dr. Jose M. MerceroSGIker

http://www.ehu.es/SGITwitter: @izosgi Facebook: IZO-SGI

March 12, 2013

http://www.ehu.es/SGI

Summary

• Summary

From Pascaline to HPC.A Brief ComputerHistory

The Software

HPC at the UPV/EHU

HPC users at theUPV/EHU

The End


From Pascaline to HPC. A Brief Computer History

The Software

HPC at the UPV/EHU

HPC users at the UPV/EHU

The End

From Pascaline to HPC. A BriefComputer History

• Summary

From Pascaline to HPC.A Brief ComputerHistory• MechanicalCalculators

• Leibniz

• Charles Babbage

• Ada Lovelace

• Herman Hollerith

• Konrad Zuse

• British Government

• ENIAC

• UNIVAC 1

• Space Race

• Second GenerationComputers

• Supercomputers

• GPUs

The Software

HPC at the UPV/EHU


The End


Mechanical Calculators

• Summary


• Leibniz

• Charles Babbage

• Ada Lovelace


• Konrad Zuse


• ENIAC

• UNIVAC 1

• Space Race


• Supercomputers

• GPUs

The Software

HPC at the UPV/EHU


The End


• In order to solve all kind of numerical problems, “MechanicalCalculators” were created.

Mechanical Calculators

• Summary


• Leibniz

• Charles Babbage

• Ada Lovelace


• Konrad Zuse


• ENIAC

• UNIVAC 1

• Space Race


• Supercomputers

• GPUs

The Software

HPC at the UPV/EHU


The End


• In order to solve all kind of numerical problems, “MechanicalCalculators” were created.

Pascaline (1642). Created by Pascal to help his fatherit was focused solving commercial arithmetic problems. Itcould add and subtract directly and multiply and divide byrepetition.

Stepped Reckoner (1694.) By Gottfried Leibniz. Basedon the Leibniz Wheel.

Gottfried Wilhelm Leibniz

• Summary


• Leibniz

• Charles Babbage

• Ada Lovelace


• Konrad Zuse


• ENIAC

• UNIVAC 1

• Space Race


• Supercomputers

• GPUs

The Software

HPC at the UPV/EHU


The End


(1646 – 1716) was a German mathematician and philoso-pher.

Leibniz Wheel


• Summary


• Leibniz

• Charles Babbage

• Ada Lovelace


• Konrad Zuse


• ENIAC

• UNIVAC 1

• Space Race


• Supercomputers

• GPUs

The Software

HPC at the UPV/EHU


The End


(1646 – 1716) was a German mathematician and philoso-pher.

Leibniz Wheel

His wheel has been used in mechanical calculators until the 1970’s


• Summary


• Leibniz

• Charles Babbage

• Ada Lovelace


• Konrad Zuse


• ENIAC

• UNIVAC 1

• Space Race


• Supercomputers

• GPUs

The Software

HPC at the UPV/EHU


The End


(1646 – 1716) was a German mathematician andphilosopher.

• He wrote 13 books in “all ar-eas of knowledge”.


• Summary


• Leibniz

• Charles Babbage

• Ada Lovelace


• Konrad Zuse


• ENIAC

• UNIVAC 1

• Space Race


• Supercomputers

• GPUs

The Software

HPC at the UPV/EHU


The End




• Documented the binarysystem.


• Summary


• Leibniz

• Charles Babbage

• Ada Lovelace


• Konrad Zuse


• ENIAC

• UNIVAC 1

• Space Race


• Supercomputers

• GPUs

The Software

HPC at the UPV/EHU


The End





• He developed the Infinitisi-mal Calculus.


• Summary


• Leibniz

• Charles Babbage

• Ada Lovelace


• Konrad Zuse


• ENIAC

• UNIVAC 1

• Space Race


• Supercomputers

• GPUs

The Software

HPC at the UPV/EHU


The End






• When he died his reputationwas in decline.


• Summary


• Leibniz

• Charles Babbage

• Ada Lovelace


• Konrad Zuse


• ENIAC

• UNIVAC 1

• Space Race


• Supercomputers

• GPUs

The Software

HPC at the UPV/EHU


The End






• When he died his reputationwas in decline.

Nowdays, he is considered as one of the First computer scientist andinformation theorist.

Charles Babbage

• Summary


• Leibniz

• Charles Babbage

• Ada Lovelace


• Konrad Zuse


• ENIAC

• UNIVAC 1

• Space Race


• Supercomputers

• GPUs

The Software

HPC at the UPV/EHU


The End


(1971-1871) was a British Mathematician, philosopher, andInventor.

• Computers where humanat that time.

• Mathematical tabulatedfunctions where full oferrors.

• Babbage decided to cre-ate these tables mechan-ically.

The First Design

• Summary


• Leibniz

• Charles Babbage

• Ada Lovelace


• Konrad Zuse


• ENIAC

• UNIVAC 1

• Space Race


• Supercomputers

• GPUs

The Software

HPC at the UPV/EHU


The End



• Designed a mechanicalcalculator, called Differ-ence Engine to tabulatepolynomial functions.

The First Design

• Summary


• Leibniz

• Charles Babbage

• Ada Lovelace


• Konrad Zuse


• ENIAC

• UNIVAC 1

• Space Race


• Supercomputers

• GPUs

The Software

HPC at the UPV/EHU


The End




• 17.000 Pounds to startwork. The cost of two war-ships.

The First Design

• Summary


• Leibniz

• Charles Babbage

• Ada Lovelace


• Konrad Zuse


• ENIAC

• UNIVAC 1

• Space Race


• Supercomputers

• GPUs

The Software

HPC at the UPV/EHU


The End





• Included the first printer toavoid transcription errors.

The First Design

• Summary


• Leibniz

• Charles Babbage

• Ada Lovelace


• Konrad Zuse


• ENIAC

• UNIVAC 1

• Space Race


• Supercomputers

• GPUs

The Software

HPC at the UPV/EHU


The End






• He considered steam aspower for the computer.

The First Design

• Summary


• Leibniz

• Charles Babbage

• Ada Lovelace


• Konrad Zuse


• ENIAC

• UNIVAC 1

• Space Race


• Supercomputers

• GPUs

The Software

HPC at the UPV/EHU


The End






• He considered steam aspower for the computer.

The Difference Engine was built in ... 1990

The First Design

• Summary


• Leibniz

• Charles Babbage

• Ada Lovelace


• Konrad Zuse


• ENIAC

• UNIVAC 1

• Space Race


• Supercomputers

• GPUs

The Software

HPC at the UPV/EHU


The End


Build by the London Science Museum in 1990

The Second Design

• Summary


• Leibniz

• Charles Babbage

• Ada Lovelace


• Konrad Zuse


• ENIAC

• UNIVAC 1

• Space Race


• Supercomputers

• GPUs

The Software

HPC at the UPV/EHU


The End


• A multipurpose Computer.

The Second Design

• Summary


• Leibniz

• Charles Babbage

• Ada Lovelace


• Konrad Zuse


• ENIAC

• UNIVAC 1

• Space Race


• Supercomputers

• GPUs

The Software

HPC at the UPV/EHU


The End



• Arithmetic logic unit, control flow in the form of conditionalbranching and loops, and integrated memory.

The Second Design

• Summary


• Leibniz

• Charles Babbage

• Ada Lovelace


• Konrad Zuse


• ENIAC

• UNIVAC 1

• Space Race


• Supercomputers

• GPUs

The Software

HPC at the UPV/EHU


The End




• Programable using Punching Cards.

The Second Design

• Summary


• Leibniz

• Charles Babbage

• Ada Lovelace


• Konrad Zuse


• ENIAC

• UNIVAC 1

• Space Race


• Supercomputers

• GPUs

The Software

HPC at the UPV/EHU


The End





• It was Turing Complete (Turing paper appeared in 1936).

The Second Design

• Summary


• Leibniz

• Charles Babbage

• Ada Lovelace


• Konrad Zuse


• ENIAC

• UNIVAC 1

• Space Race


• Supercomputers

• GPUs

The Software

HPC at the UPV/EHU


The End






Due to financial, technical and personal problems this design hasnever built. There is an organization that wants to build it by 2021 the150th aniversary of his dead.

The Second Design

• Summary


• Leibniz

• Charles Babbage

• Ada Lovelace


• Konrad Zuse


• ENIAC

• UNIVAC 1

• Space Race


• Supercomputers

• GPUs

The Software

HPC at the UPV/EHU


The End






Due to financial, technical and personal problems this design hasnever built. There is an organization that wants to build it by 2021 the150th aniversary of his dead.

The first programable computer was build in the 1940s.

Ada Lovelace

• Summary


• Leibniz

• Charles Babbage

• Ada Lovelace


• Konrad Zuse


• ENIAC

• UNIVAC 1

• Space Race


• Supercomputers

• GPUs

The Software

HPC at the UPV/EHU


The End


1815 - 1852 was an English mathematician, daughter ofLord Byron.

• She was interested inBabbage’s Analytical En-gine.

Ada Lovelace

• Summary


• Leibniz

• Charles Babbage

• Ada Lovelace


• Konrad Zuse


• ENIAC

• UNIVAC 1

• Space Race


• Supercomputers

• GPUs

The Software

HPC at the UPV/EHU


The End




• Developed an algorithm toclaculate the sequence ofthe Bernoully numbers.

Ada Lovelace

• Summary


• Leibniz

• Charles Babbage

• Ada Lovelace


• Konrad Zuse


• ENIAC

• UNIVAC 1

• Space Race


• Supercomputers

• GPUs

The Software

HPC at the UPV/EHU


The End




• Developed an algorithm toclaculate the sequence ofthe Bernoully numbers.

• She is considered as thefirst programmer.

Herman Hollerith

• Summary


• Leibniz

• Charles Babbage

• Ada Lovelace


• Konrad Zuse


• ENIAC

• UNIVAC 1

• Space Race


• Supercomputers

• GPUs

The Software

HPC at the UPV/EHU


The End


1860 - 1929 was an statitian

• He developed a mechan-ical tabulator based onpunched cards.

• A punch card represents aperson.

Herman Hollerith

• Summary


• Leibniz

• Charles Babbage

• Ada Lovelace


• Konrad Zuse


• ENIAC

• UNIVAC 1

• Space Race


• Supercomputers

• GPUs

The Software

HPC at the UPV/EHU


The End


Hollorith Census Punched Card

Herman Hollerith

• Summary


• Leibniz

• Charles Babbage

• Ada Lovelace


• Konrad Zuse


• ENIAC

• UNIVAC 1

• Space Race


• Supercomputers

• GPUs

The Software

HPC at the UPV/EHU


The End


1860 - 1929 was an statician



• Each punch was a charac-teristic for this person.

Herman Hollerith

• Summary


• Leibniz

• Charles Babbage

• Ada Lovelace


• Konrad Zuse


• ENIAC

• UNIVAC 1

• Space Race


• Supercomputers

• GPUs

The Software

HPC at the UPV/EHU


The End


1860 - 1929 was an statician



• Each punch was a charac-teristic for this person.

• He used machines to tab-ulate and sort the punchcards.

The census of 1890 was finished months ahead and far underbudget.

Konrad Zuse

• Summary


• Leibniz

• Charles Babbage

• Ada Lovelace


• Konrad Zuse


• ENIAC

• UNIVAC 1

• Space Race


• Supercomputers

• GPUs

The Software

HPC at the UPV/EHU


The End


1910-1995 was civil engineer.

• Driven by his curiosity build theZ1 computer in his apartment.

Konrad Zuse

• Summary


• Leibniz

• Charles Babbage

• Ada Lovelace


• Konrad Zuse


• ENIAC

• UNIVAC 1

• Space Race


• Supercomputers

• GPUs

The Software

HPC at the UPV/EHU


The End




• He exhibited Z2 and got fundingfrom the government to build Z3,but the project was not consid-ered strategic for war.

Konrad Zuse

• Summary


• Leibniz

• Charles Babbage

• Ada Lovelace


• Konrad Zuse


• ENIAC

• UNIVAC 1

• Space Race


• Supercomputers

• GPUs

The Software

HPC at the UPV/EHU


The End





• Z3 was completed in 1941 anddestroyed by the alliates in 1944.

Konrad Zuse

• Summary


• Leibniz

• Charles Babbage

• Ada Lovelace


• Konrad Zuse


• ENIAC

• UNIVAC 1

• Space Race


• Supercomputers

• GPUs

The Software

HPC at the UPV/EHU


The End






• Z3 is considered as the first Tur-ing Complete computer.

Konrad Zuse

• Summary


• Leibniz

• Charles Babbage

• Ada Lovelace


• Konrad Zuse


• ENIAC

• UNIVAC 1

• Space Race


• Supercomputers

• GPUs

The Software

HPC at the UPV/EHU


The End






• Z3 is considered as the first Tur-ing Complete computer.

On 1946 Zuse created this first computer company he got the moneyfrom ETH Zurich University and IBM option on his patents.

Konrad Zuse

• Summary


• Leibniz

• Charles Babbage

• Ada Lovelace


• Konrad Zuse


• ENIAC

• UNIVAC 1

• Space Race


• Supercomputers

• GPUs

The Software

HPC at the UPV/EHU


The End


Zuse’s Z1 replica, financed by Siemmnes in 1987-89

The Z3

• Summary


• Leibniz

• Charles Babbage

• Ada Lovelace


• Konrad Zuse


• ENIAC

• UNIVAC 1

• Space Race


• Supercomputers

• GPUs

The Software

HPC at the UPV/EHU


The End


Z3 replica. The original was destroyed during bombardment of Berlin. It was the world’s first working programmable, fullyautomatic computing machine. It was electromechanical.

War

• Summary


• Leibniz

• Charles Babbage

• Ada Lovelace


• Konrad Zuse


• ENIAC

• UNIVAC 1

• Space Race


• Supercomputers

• GPUs

The Software

HPC at the UPV/EHU


The End


British Government

• Summary


• Leibniz

• Charles Babbage

• Ada Lovelace


• Konrad Zuse


• ENIAC

• UNIVAC 1

• Space Race


• Supercomputers

• GPUs

The Software

HPC at the UPV/EHU


The End


1944 Collosus, dessigned to break the Enigma.

• 10 Collosus where usedduring War.

British Government

• Summary


• Leibniz

• Charles Babbage

• Ada Lovelace


• Konrad Zuse


• ENIAC

• UNIVAC 1

• Space Race


• Supercomputers

• GPUs

The Software

HPC at the UPV/EHU


The End




• Contained 2400 valves.

British Government

• Summary


• Leibniz

• Charles Babbage

• Ada Lovelace


• Konrad Zuse


• ENIAC

• UNIVAC 1

• Space Race


• Supercomputers

• GPUs

The Software

HPC at the UPV/EHU


The End





• It was not a general pur-pose machine.

British Government

• Summary


• Leibniz

• Charles Babbage

• Ada Lovelace


• Konrad Zuse


• ENIAC

• UNIVAC 1

• Space Race


• Supercomputers

• GPUs

The Software

HPC at the UPV/EHU


The End





• It was not a general pur-pose machine.

First electronic, digital, computer that was at all programmable.

Mauchly & Eckert

• Summary


• Leibniz

• Charles Babbage

• Ada Lovelace


• Konrad Zuse


• ENIAC

• UNIVAC 1

• Space Race


• Supercomputers

• GPUs

The Software

HPC at the UPV/EHU


The End


John Mauchly (far left) and Presper Eckert (far right).

• It was desigend to calcu-late Artillary Firing Tablesfor the USA Army.

Mauchly & Eckert

• Summary


• Leibniz

• Charles Babbage

• Ada Lovelace


• Konrad Zuse


• ENIAC

• UNIVAC 1

• Space Race


• Supercomputers

• GPUs

The Software

HPC at the UPV/EHU


The End




• Started in 1943. It was anstrategic project for War,but was finished in 1946.

Mauchly & Eckert

• Summary


• Leibniz

• Charles Babbage

• Ada Lovelace


• Konrad Zuse


• ENIAC

• UNIVAC 1

• Space Race


• Supercomputers

• GPUs

The Software

HPC at the UPV/EHU


The End





• The cost is stimated in500.000 USD (6 millionstoday).

Mauchly & Eckert

• Summary


• Leibniz

• Charles Babbage

• Ada Lovelace


• Konrad Zuse


• ENIAC

• UNIVAC 1

• Space Race


• Supercomputers

• GPUs

The Software

HPC at the UPV/EHU


The End






• First computer designedto be Turing Complete.

Mauchly & Eckert

• Summary


• Leibniz

• Charles Babbage

• Ada Lovelace


• Konrad Zuse


• ENIAC

• UNIVAC 1

• Space Race


• Supercomputers

• GPUs

The Software

HPC at the UPV/EHU


The End






• First computer designedto be Turing Complete.

Was the first electronic general-purpose computer

ENIAC

• Summary


• Leibniz

• Charles Babbage

• Ada Lovelace


• Konrad Zuse


• ENIAC

• UNIVAC 1

• Space Race


• Supercomputers

• GPUs

The Software

HPC at the UPV/EHU


The End


• Electronic and decimal.

• 27 Tn and 30 m long.

• 18.000 vacuum tubes.

• 3000 sums/sec. and 385multiplications/sec.

ENIAC

• Summary


• Leibniz

• Charles Babbage

• Ada Lovelace


• Konrad Zuse


• ENIAC

• UNIVAC 1

• Space Race


• Supercomputers

• GPUs

The Software

HPC at the UPV/EHU


The End


• Electronic and decimal.

• 27 Tn and 30 m long.

• 18.000 vacuum tubes.

• 3000 sums/sec. and 385multiplications/sec.

It was working up to 1955 with expansions and improvements of thehardware. It is said that ENIAC may have run more calculations thanall mankind had done up to that point.

ENIAC

• Summary


• Leibniz

• Charles Babbage

• Ada Lovelace


• Konrad Zuse


• ENIAC

• UNIVAC 1

• Space Race


• Supercomputers

• GPUs

The Software

HPC at the UPV/EHU


The End


• During the constructiona lot of problems wherefound.

• Reprograming ENIAC wasvery difficult.

• Data Input/Output slow.

• New design was made,the EDVAC.

• This design was the vonNeumann arquitecture.

ENIAC

• Summary


• Leibniz

• Charles Babbage

• Ada Lovelace


• Konrad Zuse


• ENIAC

• UNIVAC 1

• Space Race


• Supercomputers

• GPUs

The Software

HPC at the UPV/EHU


The End







ENIAC

• Summary


• Leibniz

• Charles Babbage

• Ada Lovelace


• Konrad Zuse


• ENIAC

• UNIVAC 1

• Space Race


• Supercomputers

• GPUs

The Software

HPC at the UPV/EHU


The End







von Neumann architecture has been the basis for moderncomputers.

UNIVAC 1

• Summary


• Leibniz

• Charles Babbage

• Ada Lovelace


• Konrad Zuse


• ENIAC

• UNIVAC 1

• Space Race


• Supercomputers

• GPUs

The Software

HPC at the UPV/EHU


The End


The first popular computer.

• UNIVAC was one of the first computer companies created byMauchly & Eckert.

• To promote UNIVAC, together with C.B.S., was used to predictthe result of the 1952 elections.

Space Race. Towards Miniaturization

• Summary


• Leibniz

• Charles Babbage

• Ada Lovelace


• Konrad Zuse


• ENIAC

• UNIVAC 1

• Space Race


• Supercomputers

• GPUs

The Software

HPC at the UPV/EHU


The End



• Summary


• Leibniz

• Charles Babbage

• Ada Lovelace


• Konrad Zuse


• ENIAC

• UNIVAC 1

• Space Race


• Supercomputers

• GPUs

The Software

HPC at the UPV/EHU


The End


The transistor revolutionizes the electronics and computation:smaller, saver, lower-energy ...

• Vacuum Tube(1904).

• First experimental transis-tor(1947).

• Commercial low cost(1953).

• First integrated cisrcuit(1958).


• Summary


• Leibniz

• Charles Babbage

• Ada Lovelace


• Konrad Zuse


• ENIAC

• UNIVAC 1

• Space Race


• Supercomputers

• GPUs

The Software

HPC at the UPV/EHU


The End


In 1969, two mini-supercomputers where running on the Luna landerand Orbiter.


• Summary


• Leibniz

• Charles Babbage

• Ada Lovelace


• Konrad Zuse


• ENIAC

• UNIVAC 1

• Space Race


• Supercomputers

• GPUs

The Software

HPC at the UPV/EHU


The End


• 5.000 Integrated Circuits.


• Summary


• Leibniz

• Charles Babbage

• Ada Lovelace


• Konrad Zuse


• ENIAC

• UNIVAC 1

• Space Race


• Supercomputers

• GPUs

The Software

HPC at the UPV/EHU


The End



• First computer build withIntegrated Circuits.


• Summary


• Leibniz

• Charles Babbage

• Ada Lovelace


• Konrad Zuse


• ENIAC

• UNIVAC 1

• Space Race


• Supercomputers

• GPUs

The Software

HPC at the UPV/EHU


The End




• 2 MHz Frequency. 16 bitwords and 2048 words ofRAM.


• Summary


• Leibniz

• Charles Babbage

• Ada Lovelace


• Konrad Zuse


• ENIAC

• UNIVAC 1

• Space Race


• Supercomputers

• GPUs

The Software

HPC at the UPV/EHU


The End




• 2 MHz Frequency. 16 bitwords and 2048 words ofRAM.

• 32 Kg.

Second Generation Computers. Transistor Computers

• Summary


• Leibniz

• Charles Babbage

• Ada Lovelace


• Konrad Zuse


• ENIAC

• UNIVAC 1

• Space Race


• Supercomputers

• GPUs

The Software

HPC at the UPV/EHU


The End


• Harwell CADET (AtomicEnergy Research Estab-lishment. 1951 UK)

• IBM-604 (1954 USA)

• IBM-608 First Commercialfully transistorized com-puter (1957).

Supercomputers and HPC

• Summary


• Leibniz

• Charles Babbage

• Ada Lovelace


• Konrad Zuse


• ENIAC

• UNIVAC 1

• Space Race


• Supercomputers

• GPUs

The Software

HPC at the UPV/EHU


The End


• Supercomputers were in-troduced in the 1960 bySeymour Cray at CDC.

• Cray research lead themarket from 1985 to 1990(Vectorial processors).

• In the 90’s, small com-puter aggregated super-computers were created(Scalar Processors).


• Summary


• Leibniz

• Charles Babbage

• Ada Lovelace


• Konrad Zuse


• ENIAC

• UNIVAC 1

• Space Race


• Supercomputers

• GPUs

The Software

HPC at the UPV/EHU


The End


High-performance computing (HPC) is a term that arose after theterm “supercomputer.”


• Summary


• Leibniz

• Charles Babbage

• Ada Lovelace


• Konrad Zuse


• ENIAC

• UNIVAC 1

• Space Race


• Supercomputers

• GPUs

The Software

HPC at the UPV/EHU


The End



HPC have the same elements as supercomputers, at an smallerscale.


• Summary


• Leibniz

• Charles Babbage

• Ada Lovelace


• Konrad Zuse


• ENIAC

• UNIVAC 1

• Space Race


• Supercomputers

• GPUs

The Software

HPC at the UPV/EHU


The End




”Supercomputer” is used to refer to a more powerful set of“high-performance computers”.


• Summary


• Leibniz

• Charles Babbage

• Ada Lovelace


• Konrad Zuse


• ENIAC

• UNIVAC 1

• Space Race


• Supercomputers

• GPUs

The Software

HPC at the UPV/EHU


The End




”Supercomputer” is used to refer to a more powerful set of“high-performance computers”.

Today, some Supercomputers are HPC aggregatedclusters and others are specially designed HPC systems →

Cray and IBM Blue-Gene

GPUs

• Summary


• Leibniz

• Charles Babbage

• Ada Lovelace


• Konrad Zuse


• ENIAC

• UNIVAC 1

• Space Race


• Supercomputers

• GPUs

The Software

HPC at the UPV/EHU


The End


Graphics cards (GPUs) are emerging as a major new tool forScientific Computing.

• Massively produced → relativelycheap (cheaper than FPGA’s -FieldProgrammable Gate Arrays-).

• Massively parallel processing.

• Designed to calculate.

• Difficult to program them. Lack of stan-dards.

GPUs

• Summary


• Leibniz

• Charles Babbage

• Ada Lovelace


• Konrad Zuse


• ENIAC

• UNIVAC 1

• Space Race


• Supercomputers

• GPUs

The Software

HPC at the UPV/EHU


The End


Graphics cards (GPUs) are emerging as a major new tool forScientific Computing.Top top500 computers have mixed CPU/GPGPUs computingcapabilities.





GPUs

• Summary


• Leibniz

• Charles Babbage

• Ada Lovelace


• Konrad Zuse


• ENIAC

• UNIVAC 1

• Space Race


• Supercomputers

• GPUs

The Software

HPC at the UPV/EHU


The End



Nvidia GT300





GPUs

• Summary


• Leibniz

• Charles Babbage

• Ada Lovelace


• Konrad Zuse


• ENIAC

• UNIVAC 1

• Space Race


• Supercomputers

• GPUs

The Software

HPC at the UPV/EHU


The End



Nvidia GT300





The return of mathematical coprocessor.

The Software

• Summary


The Software

HPC at the UPV/EHU


The End


• Summary


The Software

HPC at the UPV/EHU


The End


What about the Software?

Software is as important as HARDWARE in HPC


• Summary


The Software

HPC at the UPV/EHU


The End


Having the hardware, we need specific software which can be usedin HPC computers.


• Summary


The Software

HPC at the UPV/EHU


The End



• The first codes running on supercomputers were simple toparallelize. Crays where vectorial computers.


• Summary


The Software

HPC at the UPV/EHU


The End




• HPC architectures changes in the 90’s Vectorial Processors→ Serial Processors New parallel programming paradigms.


• Summary


The Software

HPC at the UPV/EHU


The End





• Many codes where adapted to be run in this HPC hardwarewith this new programming paradigms. Their performance wasnot very good due to the old code parts.


• Summary


The Software

HPC at the UPV/EHU


The End





• Many codes where adapted to be run in this HPC hardwarewith this new programming paradigms. Their performance wasnot very good due to the old code parts.

• Others, where created from scratch including more efficientalgorithms optimized to be run on thousand of processors.


• Summary


The Software

HPC at the UPV/EHU


The End


Today, we are facing a similar problems with GPGPUs.


• Summary


The Software

HPC at the UPV/EHU


The End



• A single GPGPU has around 500 process units. They canspeed up a code significantly.


• Summary


The Software

HPC at the UPV/EHU


The End




• The problem is to adapt/rewrite the old codes to takeadvantage of this new technologies.


• Summary


The Software

HPC at the UPV/EHU


The End




• The problem is to adapt/rewrite the old codes to takeadvantage of this new technologies.

It is crucial to collaborate between scientist, computer scien ceengineers and mathematicians to analyze the old codes and

adapt them to this new technologies.

HPC at the UPV/EHU

• Summary


The Software

HPC at the UPV/EHU• Scientific Computingbefore us

• SGI-IZO

• Resources

• Technical Data


The End


Scientific Computing before us

• Summary


The Software


• SGI-IZO

• Resources

• Technical Data


The End


Bartolo was the computer available for Leioa Campus until 2005.

• 4 Alpha proccessors.

• 1 GB RAM

• . . .

Bartolo.

Many users for a small machine.

Scientific Computation before us

• Summary


The Software


• SGI-IZO

• Resources

• Technical Data


The End


Researchers with their own computers

Orpheus en Donostia 1998-2004.

• The computers belonged toa researcher and only theirgroup had access to it.

◦ Researchershad to set upand adminis-trate this com-puters


• Summary


The Software


• SGI-IZO

• Resources

• Technical Data


The End






Scientific Computing before us

• Summary


The Software


• SGI-IZO

• Resources

• Technical Data


The End


• Only researchers with important funding had access to areasonable computational resources.

• Researches were dedicating part of their research time tomaintain and set up their computational resources, usuallyPhD students.

Creation of the SGI-IZO. 2004

• Summary


The Software


• SGI-IZO

• Resources

• Technical Data


The End


Some researchers (mainly Chemist andPhysicist) promoted the service that got

important funding and was created in 2004.

The SGI-IZO

• Summary


The Software


• SGI-IZO

• Resources

• Technical Data


The End


Disordered resources, spreadaround, sometimes unadecuate,unused and without profesionalsupport.

The SGI-IZO

• Summary


The Software


• SGI-IZO

• Resources

• Technical Data


The End


Disordered resources, spreadaround, sometimes unadecuate,unused and without profesionalsupport.

It was never such a good HPCinfraestruture nor human supportavailable for researchers1+1=3.

The SGI-IZO

• Summary


The Software


• SGI-IZO

• Resources

• Technical Data


The End


• IZO-SGI is created to sat-isfy the HPC needs.

• Hardware expansion.Pendulo home-made grid.

• 2nd HW expansion. Al-ways Cutting Edge Tech.

• 3rd expansion.

• 4th expansion

• We have already ensuredanother Hardware expan-sion for 2013.

Resources: Cluster Arina

• Summary


The Software


• SGI-IZO

• Resources

• Technical Data


The End


Technical Data

• Summary


The Software


• SGI-IZO

• Resources

• Technical Data


The End


• 1 main system plus pendulo and 20% ofIkerbasque/I2Basque IBM.

Technical Data

• Summary


The Software


• SGI-IZO

• Resources

• Technical Data


The End



• 1368 cores itanium2 and x86-64.

Technical Data

• Summary


The Software


• SGI-IZO

• Resources

• Technical Data


The End




• From 4 to 12 core per node.

Technical Data

• Summary


The Software


• SGI-IZO

• Resources

• Technical Data


The End





• From 4 a 128 GB of RAM per node.

Technical Data

• Summary


The Software


• SGI-IZO

• Resources

• Technical Data


The End






• Servers, including data server are in High-Availability.

Technical Data

• Summary


The Software


• SGI-IZO

• Resources

• Technical Data


The End







• 2 high performace file systems (Lustre) 4.7 and 22 TB.

Technical Data

• Summary


The Software


• SGI-IZO

• Resources

• Technical Data


The End








• Infiniband interconnection (10-40 Gb/s).

Technical Data

• Summary


The Software


• SGI-IZO

• Resources

• Technical Data


The End








• Infiniband interconnection (10-40 Gb/s).

• 4 Nodes with 2 Nvidia Fermi GPU cards each.

Machines...

• Summary


The Software


• SGI-IZO

• Resources

• Technical Data


The End


Resources

• Summary


The Software


• SGI-IZO

• Resources

• Technical Data


The End


• Secondary CPD and backup.

• Access control, alarm andVCC.

• Operation and monitorizationroom.

• AC, Temp. alarm.

• SAI.

• Electric generator.

• Fire system.

Resources

• Summary


The Software


• SGI-IZO

• Resources

• Technical Data


The End


• Secondary CPD and backup.

• Access control, alarm andVCC.

• Operation and monitorizationroom.

• AC, Temp. alarm.

• SAI.

• Electric generator.

• Fire system.

We do no only provide HPC machines and technology. . .

People and knownledge. The SGI-IZO

• Summary


The Software


• SGI-IZO

• Resources

• Technical Data


The End


We provide a computing service.

Our goals . . .

• Summary


The Software


• SGI-IZO

• Resources

• Technical Data


The End


Our goals . . .

• Summary


The Software


• SGI-IZO

• Resources

• Technical Data


The End


. . . is to have our users happy.

Our goals . . .

• Summary


The Software


• SGI-IZO

• Resources

• Technical Data


The End



. . . hide the complexity of the system and providesimple solutions to researchers.

Our goals . . .

• Summary


The Software


• SGI-IZO

• Resources

• Technical Data


The End



. . . hide the complexity of the system and providesimple solutions to researchers.

What do users want?

Users Want . . .

• Summary


The Software


• SGI-IZO

• Resources

• Technical Data


The End


• . . . their jobs to be run efficiently.

We have a variety of resources to solve different typeof scientific problems.

Users Want . . .

• Summary


The Software


• SGI-IZO

• Resources

• Technical Data


The End




• . . . their jobs to finish as soon as possible.

We have cutting edge resources, efficientlyadministrated.

Users Want . . .

• Summary


The Software


• SGI-IZO

• Resources

• Technical Data


The End




• . . . their jobs to finish as soon as possible.

We have cutting edge resources, efficientlyadministrated.

• . . . to have easy to use resources.

We have a service and tools designed to keep thingssimple.

Scientist training and user support is also important.

The SGI-IZO

• Summary


The Software


• SGI-IZO

• Resources

• Technical Data


The End


SCICOMP Project (2009-2013)

• Led by the IZO-SGI.

• A multidisciplinary project involving basic science researchers,and computer engineers.

• Five different departments of the UPV/EHU are involved.

• The goal is to adapt scientific codes to use them efficiently inHPC systems.

HPC users at the UPV/EHU

• Summary


The Software

HPC at the UPV/EHU


• Astrophysics

• Drug Design

• High Energies

• Quantum Chemistry

• Physical Chemistry

• SupramolecularChemistry

• Biophysics

• Matherial Physics

• CFD

• Genetics

The End


Astrophysics

• Summary


The Software

HPC at the UPV/EHU


• Astrophysics

• Drug Design

• High Energies




• Biophysics


• CFD

• Genetics

The End


El misterio de los jets de Jupiter comienza a desvelarse.

Sanchez-Lavega, A., G. Orton, S., R. Hueso, E. Garcıa-Melendo, S.Perez-Hoyos, A. Simon-Miller, J. F. Rojas, J. M. Gomez et al

Drug Design

• Summary


The Software

HPC at the UPV/EHU


• Astrophysics

• Drug Design

• High Energies




• Biophysics


• CFD

• Genetics

The End


Diseno de moleculas que detienen el avance del cancer.

Prof. Fernando P. Cossıo

Altas Energıas

• Summary


The Software

HPC at the UPV/EHU


• Astrophysics

• Drug Design

• High Energies




• Biophysics


• CFD

• Genetics

The End


Extreme dynamics and energetics ofCoulomb explosions of Xe clusters.

www.rsc.org/pccp Volume 11 | Number 1 | 7 January 2009 | Pages 1–196

ISSN 1463-9076

Physical Chemistry Chemical Physics

PERSPECTIVE

Haran et al.

Collapse transition in proteins

COVER ARTICLE

Jortner et al.

Extreme dynamics and energetics of Coulomb explosion of Xe clusters 1463-9076(2009)11:1;1-8

Prof. Andreas Heidenreich

High Accuracy Method development and aplications PNOF

• Summary


The Software

HPC at the UPV/EHU


• Astrophysics

• Drug Design

• High Energies




• Biophysics


• CFD

• Genetics

The End


■��✁ ✂✄☎✆✝✞✟✠☎

P✡②s☛☞✌✍ ✎✡✏✑☛s✒✓② ✎✡✏✑☛☞✌✍ P✡②s☛☞s

✇✇✇✳r✔✕✳✖r❣✗✘✕✕✘ ❱♦✙✚✛✜ ✶✢ ✣ ✤✚✛✥✜✦ ✹✧ ✣ ★ ❉✜✩✜✛✥✜✦ ✷✪✶✶ ✣ ✫❛✬✜✭ ✷✪✪✷✢✮✷✪✹✯✷

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View Article Online / Journal Homepage / Table of Contents for this issue

Natural Orbital Functionals to Solve the Schrodinger EquationXabier Lopez, Jon M. Matxain, Mario Piris, Fernando Ruiperez,Jesus Ugalde

Ribose Found in the Gas Phase

• Summary


The Software

HPC at the UPV/EHU


• Astrophysics

• Drug Design

• High Energies




• Biophysics


• CFD

• Genetics

The End


They use Theory to understand experiments.

Prof. Jose A. Fernandez y Dr. Emilio Cocinero

Supramolecular Assembly of Diplatinum Species throughWeak PtII-PtII Intermolecular Interactions

• Summary


The Software

HPC at the UPV/EHU


• Astrophysics

• Drug Design

• High Energies




• Biophysics


• CFD

• Genetics

The End


Supramolecular Assembly of Diplatinum Species through Weak PtII-PtII Intermolecular Interactions: A Combined

Experimental and Computational Study, Chemistry - A European Journal 2012 . Alejandro Perez Paz, Leonardo A. Espinoss

Leal, Mohammed-Reza Azani, Alejandro Guijarro, J. Sanz Miguel, Gonzalo Givaja, Oscar Castillo, Ruben Mas-Balleste, Felix

Zamora, Angel Rubio

Estructural Epigenetic Studies

• Summary


The Software

HPC at the UPV/EHU


• Astrophysics

• Drug Design

• High Energies




• Biophysics


• CFD

• Genetics

The End


El sistema consiste en la proteına, el ADN, moleculas del disolventee iones de sodio y cloro. 35477 atomos en total.

Teorıa simple y sistema complejo.

Dr. Ronen Zangi

Metal/Protein Interactions

• Summary


The Software

HPC at the UPV/EHU


• Astrophysics

• Drug Design

• High Energies




• Biophysics


• CFD

• Genetics

The End


Prof. Xabier Lopez and Elena Akhmatskaya

Metal/Protein Interactions

• Summary


The Software

HPC at the UPV/EHU


• Astrophysics

• Drug Design

• High Energies




• Biophysics


• CFD

• Genetics

The End


Propiedades electr onicas de aislante topol ogicos

• Summary


The Software

HPC at the UPV/EHU


• Astrophysics

• Drug Design

• High Energies




• Biophysics


• CFD

• Genetics

The End


InSbT2 Bulk band inversion.Resolucion de la ecuacion de Schrodinger en materiales.

Dr. Maia Garcıa Vergniory

Building Ventilation and Confort

• Summary


The Software

HPC at the UPV/EHU


• Astrophysics

• Drug Design

• High Energies




• Biophysics


• CFD

• Genetics

The End


Prof. Gustavo Esteban

DNA new generation sequencing techniques

• Summary


The Software

HPC at the UPV/EHU


• Astrophysics

• Drug Design

• High Energies




• Biophysics


• CFD

• Genetics

The End


• The thicklip gey mullet (afish) transcriptom was Se-quenced.

Prof. I. Cancio

The End

• Summary


The Software

HPC at the UPV/EHU


The End

• Final Comments


Final Comments

• Summary


The Software

HPC at the UPV/EHU


The End

• Final Comments


• Computers are strategic nowdays in most of the areas ofknowledge.

• Computer evolution is very fast

• The UPV/EHU offers human and computation resources toscientific computing researchers. Reserchers never had suchsupport before.

• The IZO-SGI promotes and supports HPC at the UPV/EHU.

• Not only for big users.

Final Comments

• Summary


The Software

HPC at the UPV/EHU


The End

• Final Comments


• Computers are strategic nowdays in most of the areas ofknowledge.

• Computer evolution is very fast

• The UPV/EHU offers human and computation resources toscientific computing researchers. Reserchers never had suchsupport before.

• The IZO-SGI promotes and supports HPC at the UPV/EHU.

• Not only for big users.

The more the groups using the service and bigger are their needs,the better the HPC services and the support for the others.

More Information

• Summary


The Software

HPC at the UPV/EHU


The End

• Final Comments


Web Page:http://www.ehu.es/sgi

Blog:http://www.ehu.es/ehusfera/hpc

Twitter: @izosgiFacebook: IZO-SGI

Eduardo Ogando (PhD inPhysics)CIDIR BizakiaTel [email protected]

Txema Mercero (PhD. inChemistry)Kimika Fakultatea (Donostia)Tel [email protected]

Thanks for your kind attention.

high performance computing at the upv/ehu. · 2013-03-20 · •charles babbage •ada lovelace...

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