hiv vaccine database and web works ucsc bid. hiv vaccine database and web works ucsc status report
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![Page 1: HIV Vaccine Database and Web Works UCSC Bid. HIV Vaccine Database and Web Works UCSC Status Report](https://reader038.vdocuments.net/reader038/viewer/2022110322/56649d365503460f94a0e234/html5/thumbnails/1.jpg)
HIV Vaccine Database and Web
Works
HIV Vaccine Database and Web
Works
UCSC BidUCSC Bid
![Page 2: HIV Vaccine Database and Web Works UCSC Bid. HIV Vaccine Database and Web Works UCSC Status Report](https://reader038.vdocuments.net/reader038/viewer/2022110322/56649d365503460f94a0e234/html5/thumbnails/2.jpg)
HIV Vaccine Database and Web
Works
HIV Vaccine Database and Web
Works
UCSC Status ReportUCSC Status Report
![Page 3: HIV Vaccine Database and Web Works UCSC Bid. HIV Vaccine Database and Web Works UCSC Status Report](https://reader038.vdocuments.net/reader038/viewer/2022110322/56649d365503460f94a0e234/html5/thumbnails/3.jpg)
• GSID Project TeamJim Kent (lead, The Bioinformatitian)
- the man who saved the Public Genome Project
• GSID Project TeamJim Kent (lead, The Bioinformatitian)
- the man who saved the Public Genome ProjectFan Hsu (engineer, coordinator)Galt Barber (engineer)Bob Kuhn (QA)Erich Weiler (system admin)
Fan Hsu (engineer, coordinator)Galt Barber (engineer)Bob Kuhn (QA)Erich Weiler (system admin)
• genome.ucsc.edu– one of the top 3 bioinformatics sites– ~1 million lines of code– over 2.5 millions hits per week
• genome.ucsc.edu– one of the top 3 bioinformatics sites– ~1 million lines of code– over 2.5 millions hits per week
UCSC Genome Browser TeamUCSC Genome Browser Team
![Page 4: HIV Vaccine Database and Web Works UCSC Bid. HIV Vaccine Database and Web Works UCSC Status Report](https://reader038.vdocuments.net/reader038/viewer/2022110322/56649d365503460f94a0e234/html5/thumbnails/4.jpg)
Project OverviewProject Overview
• Relational database encompassing all significant trial data
• Web works involving 3 primary views for accessing data
Subject ViewTable ViewSequence View
• Relational database encompassing all significant trial data
• Web works involving 3 primary views for accessing data
Subject ViewTable ViewSequence View
![Page 5: HIV Vaccine Database and Web Works UCSC Bid. HIV Vaccine Database and Web Works UCSC Status Report](https://reader038.vdocuments.net/reader038/viewer/2022110322/56649d365503460f94a0e234/html5/thumbnails/5.jpg)
Subject View (proposed)Subject View (proposed)
![Page 6: HIV Vaccine Database and Web Works UCSC Bid. HIV Vaccine Database and Web Works UCSC Status Report](https://reader038.vdocuments.net/reader038/viewer/2022110322/56649d365503460f94a0e234/html5/thumbnails/6.jpg)
Subject View (delivered)Subject View (delivered)
![Page 7: HIV Vaccine Database and Web Works UCSC Bid. HIV Vaccine Database and Web Works UCSC Status Report](https://reader038.vdocuments.net/reader038/viewer/2022110322/56649d365503460f94a0e234/html5/thumbnails/7.jpg)
Table View (proposed)Table View (proposed)
![Page 8: HIV Vaccine Database and Web Works UCSC Bid. HIV Vaccine Database and Web Works UCSC Status Report](https://reader038.vdocuments.net/reader038/viewer/2022110322/56649d365503460f94a0e234/html5/thumbnails/8.jpg)
Table View (delivered)Table View (delivered)
![Page 9: HIV Vaccine Database and Web Works UCSC Bid. HIV Vaccine Database and Web Works UCSC Status Report](https://reader038.vdocuments.net/reader038/viewer/2022110322/56649d365503460f94a0e234/html5/thumbnails/9.jpg)
Table View (delivered)Table View (delivered)
![Page 10: HIV Vaccine Database and Web Works UCSC Bid. HIV Vaccine Database and Web Works UCSC Status Report](https://reader038.vdocuments.net/reader038/viewer/2022110322/56649d365503460f94a0e234/html5/thumbnails/10.jpg)
Sequence View (proposed)Sequence View (proposed)
![Page 11: HIV Vaccine Database and Web Works UCSC Bid. HIV Vaccine Database and Web Works UCSC Status Report](https://reader038.vdocuments.net/reader038/viewer/2022110322/56649d365503460f94a0e234/html5/thumbnails/11.jpg)
Sequence View (in progress)Sequence View (in progress)
![Page 12: HIV Vaccine Database and Web Works UCSC Bid. HIV Vaccine Database and Web Works UCSC Status Report](https://reader038.vdocuments.net/reader038/viewer/2022110322/56649d365503460f94a0e234/html5/thumbnails/12.jpg)
Select Subjects (delivered)Select Subjects (delivered)
![Page 13: HIV Vaccine Database and Web Works UCSC Bid. HIV Vaccine Database and Web Works UCSC Status Report](https://reader038.vdocuments.net/reader038/viewer/2022110322/56649d365503460f94a0e234/html5/thumbnails/13.jpg)
Milestone 0Milestone 0
• Signing Agreement between GSID and UCSC
Done. (11/2006) Whew!
• Signing Agreement between GSID and UCSC
Done. (11/2006) Whew!
![Page 14: HIV Vaccine Database and Web Works UCSC Bid. HIV Vaccine Database and Web Works UCSC Status Report](https://reader038.vdocuments.net/reader038/viewer/2022110322/56649d365503460f94a0e234/html5/thumbnails/14.jpg)
![Page 15: HIV Vaccine Database and Web Works UCSC Bid. HIV Vaccine Database and Web Works UCSC Status Report](https://reader038.vdocuments.net/reader038/viewer/2022110322/56649d365503460f94a0e234/html5/thumbnails/15.jpg)
Milestone 1Milestone 1
• VAX004 sequence and clinical data imported into MySQL database
• Prototype of homepage developed• Subscription and login pages implemented
with mock credit cards• Subject View finalized
Done. (2/10/07)
• VAX004 sequence and clinical data imported into MySQL database
• Prototype of homepage developed• Subscription and login pages implemented
with mock credit cards• Subject View finalized
Done. (2/10/07)
![Page 16: HIV Vaccine Database and Web Works UCSC Bid. HIV Vaccine Database and Web Works UCSC Status Report](https://reader038.vdocuments.net/reader038/viewer/2022110322/56649d365503460f94a0e234/html5/thumbnails/16.jpg)
Milestone 1bMilestone 1b
• System maintenance* • Hardware spec*• Linux system install & configuration*• UCSC deliverables install/configuration*
• UCSC QA
• Done. (2/10/07)
• System maintenance* • Hardware spec*• Linux system install & configuration*• UCSC deliverables install/configuration*
• UCSC QA
• Done. (2/10/07)* Under separate contract to Bioinformatics
Professionals* Under separate contract to Bioinformatics
Professionals
![Page 17: HIV Vaccine Database and Web Works UCSC Bid. HIV Vaccine Database and Web Works UCSC Status Report](https://reader038.vdocuments.net/reader038/viewer/2022110322/56649d365503460f94a0e234/html5/thumbnails/17.jpg)
Milestone 2Milestone 2
• Table View finalized and implemented • Real credit cards taken in subscription • Prototype Sequence View available
Done. (5/11/07)– also added Select Subjects
• Table View finalized and implemented • Real credit cards taken in subscription • Prototype Sequence View available
Done. (5/11/07)– also added Select Subjects
![Page 18: HIV Vaccine Database and Web Works UCSC Bid. HIV Vaccine Database and Web Works UCSC Status Report](https://reader038.vdocuments.net/reader038/viewer/2022110322/56649d365503460f94a0e234/html5/thumbnails/18.jpg)
Milestone 3Milestone 3
• Sequence View finalized• Home page finalized • Documentation finalized• Database available for test & launch
• ETA 8/15/07
• Sequence View finalized• Home page finalized • Documentation finalized• Database available for test & launch
• ETA 8/15/07
![Page 19: HIV Vaccine Database and Web Works UCSC Bid. HIV Vaccine Database and Web Works UCSC Status Report](https://reader038.vdocuments.net/reader038/viewer/2022110322/56649d365503460f94a0e234/html5/thumbnails/19.jpg)
First Year Status SummaryFirst Year Status Summary
Milestone 0- contract
Milestone 1 & 1b- Subject View
Milestone 2- Table View- Security/Registration/Payment- Select Subjects
• Milestone 3 (8/15/07)- Sequence View
Milestone 0- contract
Milestone 1 & 1b- Subject View
Milestone 2- Table View- Security/Registration/Payment- Select Subjects
• Milestone 3 (8/15/07)- Sequence View
![Page 20: HIV Vaccine Database and Web Works UCSC Bid. HIV Vaccine Database and Web Works UCSC Status Report](https://reader038.vdocuments.net/reader038/viewer/2022110322/56649d365503460f94a0e234/html5/thumbnails/20.jpg)
Thank YouThank You
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DemoDemo
![Page 22: HIV Vaccine Database and Web Works UCSC Bid. HIV Vaccine Database and Web Works UCSC Status Report](https://reader038.vdocuments.net/reader038/viewer/2022110322/56649d365503460f94a0e234/html5/thumbnails/22.jpg)
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Security/Signup/Payment(delivered)
Security/Signup/Payment(delivered)
![Page 24: HIV Vaccine Database and Web Works UCSC Bid. HIV Vaccine Database and Web Works UCSC Status Report](https://reader038.vdocuments.net/reader038/viewer/2022110322/56649d365503460f94a0e234/html5/thumbnails/24.jpg)
2nd and 3rd Years2nd and 3rd Years
• 2nd Year- VAX003 data- alignment tools- proteomics tools
• 3rd Year- gp160 data- additional alignment tools- data from Keith Crandall
• 2nd Year- VAX003 data- alignment tools- proteomics tools
• 3rd Year- gp160 data- additional alignment tools- data from Keith Crandall
![Page 25: HIV Vaccine Database and Web Works UCSC Bid. HIV Vaccine Database and Web Works UCSC Status Report](https://reader038.vdocuments.net/reader038/viewer/2022110322/56649d365503460f94a0e234/html5/thumbnails/25.jpg)
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