hmsc in practice: the syntax and typical workflow of the r-package hmsc · 2020. 11. 2. · hmsc in...
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![Page 1: HMSC in practice: the syntax and typical workflow of the R-package Hmsc · 2020. 11. 2. · HMSC in practice: the syntax and typical workflow of the R-package Hmsc Step 1. Setting](https://reader035.vdocuments.net/reader035/viewer/2022081623/614624c58f9ff81254201315/html5/thumbnails/1.jpg)
HMSC in practice: the syntax and typical workflow of the R-package Hmsc
![Page 2: HMSC in practice: the syntax and typical workflow of the R-package Hmsc · 2020. 11. 2. · HMSC in practice: the syntax and typical workflow of the R-package Hmsc Step 1. Setting](https://reader035.vdocuments.net/reader035/viewer/2022081623/614624c58f9ff81254201315/html5/thumbnails/2.jpg)
HMSC in practice: the syntax and typical workflow of the R-package Hmsc
Step 1. Setting model structure and fitting the model
Step 2. Examining MCMC convergence
Step 3. Evaluating model fit and comparing models
Step 4. Exploring parameter estimates
Step 5. Making predictions
![Page 3: HMSC in practice: the syntax and typical workflow of the R-package Hmsc · 2020. 11. 2. · HMSC in practice: the syntax and typical workflow of the R-package Hmsc Step 1. Setting](https://reader035.vdocuments.net/reader035/viewer/2022081623/614624c58f9ff81254201315/html5/thumbnails/3.jpg)
Step 1. Setting model structure and fitting the model
![Page 4: HMSC in practice: the syntax and typical workflow of the R-package Hmsc · 2020. 11. 2. · HMSC in practice: the syntax and typical workflow of the R-package Hmsc Step 1. Setting](https://reader035.vdocuments.net/reader035/viewer/2022081623/614624c58f9ff81254201315/html5/thumbnails/4.jpg)
Step 2. Examining MCMC convergence
![Page 5: HMSC in practice: the syntax and typical workflow of the R-package Hmsc · 2020. 11. 2. · HMSC in practice: the syntax and typical workflow of the R-package Hmsc Step 1. Setting](https://reader035.vdocuments.net/reader035/viewer/2022081623/614624c58f9ff81254201315/html5/thumbnails/5.jpg)
Step 2. Examining MCMC convergence
![Page 6: HMSC in practice: the syntax and typical workflow of the R-package Hmsc · 2020. 11. 2. · HMSC in practice: the syntax and typical workflow of the R-package Hmsc Step 1. Setting](https://reader035.vdocuments.net/reader035/viewer/2022081623/614624c58f9ff81254201315/html5/thumbnails/6.jpg)
Step 3. Evaluating model fit and comparing models
![Page 7: HMSC in practice: the syntax and typical workflow of the R-package Hmsc · 2020. 11. 2. · HMSC in practice: the syntax and typical workflow of the R-package Hmsc Step 1. Setting](https://reader035.vdocuments.net/reader035/viewer/2022081623/614624c58f9ff81254201315/html5/thumbnails/7.jpg)
Step 3. Evaluating model fit and comparing models
![Page 8: HMSC in practice: the syntax and typical workflow of the R-package Hmsc · 2020. 11. 2. · HMSC in practice: the syntax and typical workflow of the R-package Hmsc Step 1. Setting](https://reader035.vdocuments.net/reader035/viewer/2022081623/614624c58f9ff81254201315/html5/thumbnails/8.jpg)
Step 4. Exploring parameter estimates
VP = computeVariancePartitioning(m)plotVariancePartitioning(m, VP)
post = getPostEstimate(m, parName="Beta")plotBeta(m, post, supportLevel)
OmegaCor = computeAssociations(m)corrplot(OmegaCor)
![Page 9: HMSC in practice: the syntax and typical workflow of the R-package Hmsc · 2020. 11. 2. · HMSC in practice: the syntax and typical workflow of the R-package Hmsc Step 1. Setting](https://reader035.vdocuments.net/reader035/viewer/2022081623/614624c58f9ff81254201315/html5/thumbnails/9.jpg)
Step 5. Making predictions
Gradient = constructGradient(m, focalVariable)pred = predict(m, Gradient)plotGradient(m, Gradient, pred, measure, showData)