how to write manuscript. what are some considerations to keep in mind as i undertake my research?...
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How to Write Manuscript
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What are some considerations to keep in mind as I What are some considerations to keep in mind as I undertake my research? Will my research make a undertake my research? Will my research make a significant contribution to knowledge? significant contribution to knowledge?
(1. RESEARCH)(1. RESEARCH)
What qualities of my paper will make it worthy of What qualities of my paper will make it worthy of publication?publication? Is my message clear, powerful, Is my message clear, powerful, accurate, and succinct? accurate, and succinct?
(2. MANUSCRIPT)(2. MANUSCRIPT)
Is this journal a “home” for my report? Is this journal a “home” for my report?
(3. SUBMISSION)(3. SUBMISSION)
The important questions that arise in writing a manuscript :
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The ideal manuscript : - Data that would interest other scientists/ users - Novel methodology
Novelty alone is not sufficient to justify publication !! - Provide superior performance - Represent a significant improvement over competently performed - Useful application
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To publish or not to To publish or not to publish…publish…
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Your personal reason for Your personal reason for publishingpublishing
• …???
Get
funding
?
PhD
degr
ee?
get promoted…???
• However, editors, reviewers, and research community don’t consider these reasons when assessing your work.
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•Scientists publish to share with the research community findings that advance knowledge and understanding
•To present new, original results or methods
•To rationalize published results
•To present a review of the field or to summarize a particular topic
Why should scientists Why should scientists publish?publish?
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Funding Bodies
ScientistsGrant Writing
Journal Publication
Publish or perishPublish or perish
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Publishers do not want zero-cited articlesPublishers do not want zero-cited articles
Editors now regularly analyze citations per article !! “The statistic that 27% of our papers were not cited in 5 years was disconcerting. It certainly indicates that it is important to maintain high standards when accepting papers...…” – Marv Bauer, Editor, Remote Sensing of Environment
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Publishers Publishers dodo want quality want quality
WANTEDWANTED
OriginalityOriginality
Significant advances Significant advances in fieldin field
Appropriate methods Appropriate methods and conclusionsand conclusions
ReadabilityReadability
Studies that meet Studies that meet ethical standardsethical standards
NOT WANTED
• Duplications • Reports of no scientific
interest• Work out of date• Inappropriate methods
or conclusions• Studies with
insufficient data
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Can I publish this…..?Can I publish this…..?
Have you done something new and interesting?Have you done something new and interesting?
Have you checked the latest results in the field?Have you checked the latest results in the field?
Have the findings been verified?Have the findings been verified?
Have the appropriate controls been performed?Have the appropriate controls been performed?
Do your findings tell a nice story or is the story Do your findings tell a nice story or is the story incomplete?incomplete?
Is the work directly related to a current hot topic?Is the work directly related to a current hot topic?
Have you provided solutions to any difficult problems?Have you provided solutions to any difficult problems?
If all answers are “yes”, then start preparing your If all answers are “yes”, then start preparing your manuscript.manuscript.
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Publishable material CONCEPT :
(1) Least publishable unit; a euphemism for fragmentation of work to the smallest unit that is still publishable
(2) Optimal publishable unit. The optimum publishable unit includes:
(a) an amount of data that can be comfortably encompassed in a reasonable paper of five to nine printed pages of text (b) no artificial subdivisions (c) conclusions are few and crisp, (d) discussion that is sharply focused and relevant
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(3) Maximum publishable unit. The characteristics of the maximum publishable unit include:
(a) an overly long methodology section with too much subdivision; (b) difficulty in maintaining continuity in the discussion section; (c) too much (more than six ) conclusions.
Exceeding the maximum publishable unit may result in important results and ideas within the paper being lost in the sea of discussion.
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When to write a manuscript
‘‘Writers should not write just for pleasure, but to satisfy other pe
ople’s needs, and to help their colleagues……. offering them cle
ar information, well tested results, and reproducible working proc
edures.’’ (Ramirez and C. Lucy)
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Scientists must guard against writing up the work too early. This
will result in fragmentary discussion of the topic, incomplete
studies and potentially erroneous conclusions.
When to write a manuscript
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“Quality is always enhanced by more than adequate
data and by at least a few days of quiet contemplation of the
research results before the word processor keyboard is
approached.’’C.J. Sindermann, Survival Strategies for New Scientists
When to write a manuscript
A scientist should spend an hour a day working on the manuscript closest to completion
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Scientists must avoid unduly delaying writing manuscripts due to
fear of publishing an error or because of ‘writer’s block’.
Feibelman suggests that research should be planned as aseries of short, complete projects leading towardsyour overall long-term goal .
When to write a manuscript
P.J. Feibelman, A Ph.D. is Not Enough!
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(a)Each project is written as an independent piece of work describing a new kernel of knowledge, placed in the context of the long-term goal in the Introduction.
(b) Such a plan ensures a regular publication record, establishes scientific priority, and helps prevent having to write overly long and complex articles that tend to cause writer’s block.
(c) It also better satisfies the short time schedules of job reviews and granting agencies.
“Research should be planned as a series of short, complete projects leading towards your overall long-term goal”
When to write a manuscript
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Where to submit the manuscript
Several factors should be considered:
(1)Is the journal appropriate for your article?
(2)Does the journal give your work the audience that you
want?
(3)How is the timeliness of publication (important for job
reviews or grant applications).
(4) What is the citation impact factor of the journal?
(The citation impact factor is one indicator of the attention that a journal receives)
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One useful technique for choosing a journal is to review the references cited in your manuscript. (If there is a preponderance of references from a particular journal, then that is probably the most appropriate journal to which to submit the article)
The first- and most important- step in choosing an appropriate journal for your manuscript is to read the journal on a regular basis.
Where to submit the manuscript
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Preparation of manuscriptPreparation of manuscript
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What type of manuscript?What type of manuscript?
Full articles / Original articlesFull articles / Original articles
Letters / Rapid Communications / Short CommunicationsLetters / Rapid Communications / Short Communications
Review papersReview papers
Self-evaluate your work: Is it sufficient for a full article? Self-evaluate your work: Is it sufficient for a full article? Or are your results so thrilling that they need to be Or are your results so thrilling that they need to be revealed as soon as possible?revealed as soon as possible?
Ask your supervisor and colleagues for advice on Ask your supervisor and colleagues for advice on manuscript type. Sometimes outsiders may see things manuscript type. Sometimes outsiders may see things more clearly than youmore clearly than you..
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Who is the audience?Who is the audience?
Do you want to reach specialists, Do you want to reach specialists, multidisciplinary researchers, or a general multidisciplinary researchers, or a general audience? You will need to adjust information audience? You will need to adjust information and writing style accordinglyand writing style accordingly
Journals, even in similar subjects, reach readers Journals, even in similar subjects, reach readers with different backgroundswith different backgrounds
Each journal has its own style; read other Each journal has its own style; read other articles to get an idea of what is acceptedarticles to get an idea of what is accepted
Is the readership worldwide or local?Is the readership worldwide or local?
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Which journal?Which journal?
Consider:Consider:– Aims and scope (check journal websites and Aims and scope (check journal websites and
recent articles)recent articles)– Types of articlesTypes of articles– ReadershipReadership– Current hot topics (go through recent Current hot topics (go through recent
abstracts)abstracts)– Asking colleagues for adviceAsking colleagues for advice
Sometimes it is necessary to lower one’s sights or return to the lab. to obtain more data
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DO NOT gamble by scattering your manuscript to many journals
Only submit once!
International ethics standards prohibit multiple simultaneous submissions, and editors DO find out!
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All editors hate wasting time on poorly prepared manuscripts
It is a sign of disrespect
Consulting the Guide for Authors will save your time and the editor’s
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FormatFormat
Consult and apply the list of guidelines in the Consult and apply the list of guidelines in the “Guide for Authors”“Guide for Authors”
Ensure that you use the correct:Ensure that you use the correct:– LayoutLayout– Section lengths (stick to word limits)Section lengths (stick to word limits)– Nomenclature, abbreviations and spelling (British vs. Nomenclature, abbreviations and spelling (British vs.
American)American)– Reference formatReference format– Number/type of figures and tablesNumber/type of figures and tables– Statistics, etcStatistics, etc
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Article structure/Article structure/Format of a scientific paper
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Article structure/Article structure/Format of a scientific paper
TitleTitleAuthorsAuthorsAbstractAbstractKeywordsKeywords
Main text Main text (IMRD) (IMRD)– IIntroductionntroduction– MMethodsethods/ Experimental/ Experimental– RResultsesults– DDiscussion (Conclusion)iscussion (Conclusion)
AcknowledgementsAcknowledgementsReferencesReferencesSupplementary materialSupplementary material
Need to be accurate and informative for effective indexing and searching
Each has a distinct function
Remained essentially unchanged since scientific journalsfirst appeared in the 1660s
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TitleTitle
A good title should contain the fewest possible words that adequately describe the contents of a paper
DO
Convey main findings of research
Be specific
Be concise
Be complete
Attract readers
DON’T
Use unnecessary jargon
Use uncommon abbreviations
Use ambiguous terms
Use unnecessary detail
Focus on part of the content only
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Relationships between information processing, depression, fatigue and cognition in multiple sclerosis
Slower processing is correlated with higher levels of depressed mood, fatigue, lower verbal fluency, fewer words and digits recalled and poorer recall of visual-spatial information in MS patients
TitleTitle
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Title
Six styles of titles:
1. Snappy titles attempt to invent a phrase or label to describe a new technique or subject. These can be successful if the subject is genuinely new (but some sometimes generate confusion)
2. Announcement titles provide a topical description of the work (i.e Ion chromatography of complex surfactants……).
Care must be taken to not make such titles too brief
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Title
Six styles of titles:
3. Assertion titles state a central conclusion of the paper (i.e “Chemically modified tips enable selective atomic force nanoanalysis”)
4. Acronym titles contain excessive abbreviations, and are most common with hyphenated techniques. The effectiveness of such titles is limited to those readers already intimately familiar with the subject (i.e SIA-ICP-MS for…………………………….)
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Title
Six styles of titles:
5. Buzzword titles incorporate trendy topics or prefixes to capture the reader’s interest. An example is the use of ‘nano-‘ rather than ‘micro-‘
6. Series titles primarily convey that the author has studied the field for a while
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Authors and affiliationsAuthors and affiliations
Surnames: Sabarudin
Middle Initial: Use consistently or not at all
First Names: Akhmad
Affiliation: Faculty of Science / Faculty of Mathematics and Natural Sciences
Be consistent with spelling, full versus short names, full versus short addresses
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Abstract
The rule for abstract preparation is to consider that the reader may read the abstract instead of reading the paper itself.
The abstract must provide the key information from the paper, while hopefully enticing the reader to read the rest of the paper (the essence of the work and emphasize its importance)
It is best to not repeat the article title in the abstract, and to keep it short (50–150 words, with a maximum of 250). A short concise abstract has a better chance of being read.
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AbstractAbstract
Types:
Indicative (descriptive) abstracts outline the topics covered in a piece of writing so the reader can decide whether or not to read on. Often used in review articles and conference reports
Informative abstracts summarize the article based on the IMRD structure, but without section headings Structured abstracts follow headings required by the journal. Often used in Medical journals
Check carefully which type fits the journal of your choice
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AbstractAbstract
The quality of an abstract will strongly influence The quality of an abstract will strongly influence the editor’s decisionthe editor’s decision
A good abstract:•Is precise and honest
•Can stand alone
•Uses no technical jargon
•Is brief and specific
•Cites no references
Use the abstract to “sell” your articleUse the abstract to “sell” your article
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KeywordsKeywords
Keywords are important for indexing: they Keywords are important for indexing: they enable your manuscript to be more easily enable your manuscript to be more easily identified and citedidentified and cited
Check the Guide for Authors for journal Check the Guide for Authors for journal requirementsrequirements
•Keywords should be specificKeywords should be specific•Avoid uncommon abbreviations and general termsAvoid uncommon abbreviations and general terms
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KeywordsKeywords
Bad keywords: Psychiatric disorder, NRG1, LD, SNPs, Japanese large sample, association
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IntroductionIntroduction
Provide the necessary background Provide the necessary background information to put your work into information to put your work into contextcontext
It should be clear from the introduction:It should be clear from the introduction:
•Why the current work was performedWhy the current work was performed–aimsaims–significancesignificance
•What has been done beforeWhat has been done before•What was done (in brief terms) What was done (in brief terms) •What was achieved (in brief terms)What was achieved (in brief terms)
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Many readers skim articles by reading only the Introduction and Conclusions. Therefore, the important results must be highlighted in the Introduction to catch the reader’s attention.
Imagine being on the telephone with a scientist friend with whom you have not spoken for awhile. The friend asks, ‘‘What have you been doing lately?’’ Your imagined response is the outline of your Introduction.(P.J. Feibelman, A Ph.D. is Not Enough!,
Introduction
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IntroductionIntroduction
DODO
•Consult the Guide for Authors for word limitConsult the Guide for Authors for word limit
•““Set the scene”Set the scene”
•Outline “the problem” and hypothesesOutline “the problem” and hypotheses
•Ensure that the literature cited is balanced, up Ensure that the literature cited is balanced, up to date and relevantto date and relevant
•Define any non-standard abbreviations and Define any non-standard abbreviations and jargonjargon
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IntroductionIntroduction
DON’TDON’T
•Write an extensive review of the fieldWrite an extensive review of the field
•Cite disproportionately your own work, work of Cite disproportionately your own work, work of colleagues or work that supports your findings while colleagues or work that supports your findings while ignoring contradictory studies or work by competitorsignoring contradictory studies or work by competitors
•Describe methods, results or conclusions other than Describe methods, results or conclusions other than to outline what was done and achieved in the final to outline what was done and achieved in the final paragraphparagraph
•Overuse terms like “novel” and “for the first time”Overuse terms like “novel” and “for the first time”
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IntroductionIntroduction
Rotenone is a naturally occurring plant compound derived from the root and bark of
some Luguminosae species… Administration of rotenone has been shown to lead to
biochemical, anatomical, and behavioral symptoms resembling Parkinson’s disease
due to neurotoxicity [1–3]. Previous studies have shown that… However, other studi
es contradict these findings… Understanding the exact mode of action of rotenone s
hould provide additional useful information toward its possible application in oral can
cer treatment. In this report, we…
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The overriding consideration in the Experimental Section is
‘‘No matter how precious space in journals is or becomes, it
makes no sense to publish data without giving the reader
enough information to enable him to interpret or reproduce
them”
Methods/ ExperimentalMethods/ Experimental
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Everything attributed to experimental, which include
instrumentation, material, chemical, solvent, composition of
mixed solvents, experimental design, experimental procedures
should be informed clearly.
Methods/ ExperimentalMethods/ Experimental
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Methods/ ExperimentalMethods/ Experimental
The Methods section must provide sufficient information so that a knowledgeable reader can reproduce the experiment
List suppliers of reagents and manufacturers of equipment, and define apparatus in familiar terms:
“using an AD 340C plate reader (Beckman Coulter)”
OR
“using a plate reader (Beckman Coulter AD 340C)
NOT
“using a Beckman Coulter AD 340C.”
For home-built instruments, greater detail will be required
Unless the Guide for Authors states otherwise, use the past tense; the present tense is usually only used in methodology-type papers
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The Materials and Reagents section should contain a full characterization of the chemicals and reagents used.
Systematic (IUPAC) names of the compounds studied should be provided. If trivial names or abbreviations are used, the correctname should be given in parentheses upon first usage. The purity of the chemicals should also be given
Methods/ ExperimentalMethods/ Experimental
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ResultsResults
The main findings of the research
DO
•Use figures and tables to summarize data
•Show the results of statistical analysis
DON’T
•Duplicate data among tables, figures and text
•Use graphics to illustrate data that can easily be summarized with text
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Figures and tables are the most effective way to present results
BUT:
•Captions should be able to stand alone, such that the figures and tables are understandable without the need to read the entire manuscript
•The data represented should be easy to interpret
•Colour should only be used when necessary
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Figure
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TableTable
The information in the table can be presented as follows:
“ The results obtained by the proposed method are in good agreement with the certified values.Uranium could not be detected, because its concentration was lower than LOD. Larger volume of sample can be used to improve the LOD of uranium although such procedure can increase the analysis time substantially “
Summarize results in the text where possible
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GraphicsGraphics
Station I II III IV V
75U 91.3 5.3 3.2 0.2 0.075R 89.8 6.1 3.6 0.5 0.0
200R 69.3 14.2 8.6 6.8 1.1500R 63.0 29.5 3.4 4.2 0.0
1000R 86.7 8.5 4.5 0.2 0.0
ECOLOGICAL GROUP
The figure and table show the same information, but the table is more direct and clear
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GraphicGraphic ss / Figure/ Figure
•Legend is poorly defined
•Graph contains too much data
•No trend lines
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•Legend is well defined but there is still too much data and no trendlines
GraphicGraphic ss / Figure/ Figure
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•Legend is clear•Data is better organized•Trend lines are present
GraphicGraphic ss / Figures/ Figures
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StatisticsStatistics
•Indicate the statistical tests used with all relevant parameters
mean ± SD
•Give numerator and denominators with percentages
40% (100/250)…(w/w)…(v/v)….(w/v)…
•Use means and standard deviations to report normally distributed data
Make your experimental findings meaningful and convincing…
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StatisticsStatistics
•Report P valuesp=0.0035 rather than p<0.05
•The word “significant” should only be used to describe “statistically significant differences”
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DiscussionDiscussion
Describe
•How the results relate to the study’s aims and hypotheses
•How the findings relate to those of other studies
•All possible interpretations of your findings
•Limitations of the study
Avoid
•Making “grand statements” that are not supported by the data
Example: “This novel treatment will massively reduce the prevalence of malaria in the third world”
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DiscussionDiscussion
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Conclusion
Rule:
The conclusion section should only be used for interpretation, not for summarizing data already presented in the Abstract or text.
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ConclusionConclusion
Put your study into CONTEXT
Describe how it represents an advance in the field
Suggest future experiments
BUT
Avoid repetition with other sections
Avoid being overly speculative
Don’t over-emphasize the impact of your study
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ConclusionConclusion
In conclusion, findings from the present study are in general accordance with previ
ous studies that suggest…. There is a need to establish dose-dependent effects of
EPA and DHA separately and in different population groups. If findings from this st
udy are applicable to consumption of fish, then intake at the upper level of the curr
ent UK guideline range [42] may not influence cardiovascular risk factors in fairly h
ealthy, normolipidemic and middle-aged males.
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AcknowledgementsAcknowledgements
Acknowledge anyone who has helped you with the study, including:
•Researchers who supplied materials or reagents,
•Anyone who helped with the writing or English, or offered critical comments about the content
•Anyone who provided technical help
State why people have been acknowledged and ask their permission
Acknowledge sources of funding (grants)
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ReferencesReferences
Check the Guide for Authors for the correct format
Check
•Spelling of author names
•Punctuation
•Number of authors to include before using “et al.”
•Reference style
Avoid
•Personal communications, unpublished observations and submitted manuscripts not yet accepted
•Citing articles published only in the local language
•Excessive self-citation and journal self-citation
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ReferencesReferencesCheck the style and format as required – it is not the editor’s job to do so for you
Harvard System (alphabetical by author/date):
Berridge, MJ 1998, Neuronal calcium signaling, Neuron vol. 21: pp. 13-26
APA (American Psychological Association) System (alphabetical)
Berridge, M.J. (1998). Neuronal calcium signaling. Neuron 21, 13-26
Vancouver System (numbered in order or citation)
Berridge MJ. Neuronal calcium signaling. Neuron. 1998;21:13-26
There are a number of other systems in use and variations for all systems
A. Sabarudin, K. Oshita, M. Oshima, S. Motomizu, Anal. Chim. Acta 542(2005) 207.
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Supplementary materialSupplementary material
Information related to and supportive of the main text, but of secondary importance
Includes:
•Microarray data
•Method validation
•Additional controls
•Video data
Will be available online when the manuscript is published
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LANGUAGELANGUAGE
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““Journal editors, overloaded with quality manuJournal editors, overloaded with quality manuscripts, may make decisions on manuscripts scripts, may make decisions on manuscripts based on formal criteria, like grammar or spebased on formal criteria, like grammar or spelling. Don't get rejected for avoidable mistakelling. Don't get rejected for avoidable mistakes; make sure your manuscript looks perfects; make sure your manuscript looks perfect””
Thus, both the science and the language need to be sound
Arnout Jacobs, Elsevier Publishing
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The three “C”s (CThe three “C”s (C33) principle) principle
•Clarity
•Conciseness
•Correctness (accuracy)
Good writing possesses the following three “C”s:
The key is to be as brief and specific as possible without omitting essential details
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Know the enemyKnow the enemy
•Repetition
•Redundancy
•Ambiguity
•Exaggeration
Good writing avoids the following traps:
These are common annoyances for editors
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Repetition and redundancyRepetition and redundancy
Vary the sentences used when writing the abstract or describing findings at the end of the introduction
Don’t copy from other sections….!
Avoid words with the same meaning
In addition, sections were also stained with …
After centrifugation, pellets were then…
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Repetition and redundancyRepetition and redundancy
Avoid circular sentences
In order to examine differences in protein levels, lysates were subjected to 10% SDS-PAGE and Western blotting using an anti-NR1 antibody, to observe the effects of stimulation on receptor trafficking.
The reason for the experiment is described twice, in slightly different terms
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AmbiguityAmbiguity
Ensure correct use of “which”, commas and hyphens
“Calcium regulated transcription” has a different meaning from
“Calcium-regulated transcription”
“To identify biomarkers of prostate cancer, we performed microarray analysis, using custom cDNA arrays” The second comma should be deleted
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AmbiguityAmbiguity
Ensure correct use of “which”, commas and hyphens
“Data were normalised to the internal reference housekeeping gene actin, which showed…”
The “which” is used incorrectly, referring to actin rather than to the normalisation of data
“Data were normalised to the internal reference housekeeping gene actin, revealing that…” is correct
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ExaggerationExaggeration
Effect of p.o. administration of tea and caffeine on tumor number
0
10
20
30
40
50
60
Water Green Tea Black Tea Caffeine
Treatment
Tu
mo
r n
um
be
r*
“There was a massive decrease in the number of tumors following p.o. administration of green tea”
Beware of exaggeration but do indicate significance
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Other common trapsOther common traps
Inconsistent tense – don’t mix tenses in the same sentence
Before tumors were microdissected, epithelial cells are…
Inconsistent use of plural or singular
In eight patients, a biopsy from the affected sites of the head and neck was performed
In eight patients, biopsies from the affected sites of the head and neck were performed
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Other common trapsOther common traps
Unbalanced sentences – make sure the clauses either side of “compared with” match up
Expression levels of p53 in smokers were compared with non-smokers…
Expression levels of p53 in smokers were compared with those in non-smokers…
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Other common trapsOther common traps
Incorrect use of respectively – two corresponding lists are required
The proportions of various monocyte surface markers were 45%, 63% and 70%, respectively
The proportions of monocytes positive for CD163, CD7 and CD11a were 45%, 63% and 70%, respectively
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Other common trapsOther common traps
Incorrect use of etc. / and so onIncorrect use of etc. / and so on
““The two groups of data were compared using a The two groups of data were compared using a variety of statistical methods including a t-test, variety of statistical methods including a t-test, chi squared analysis,chi squared analysis, etcetc..””
It is important here to define the tests used as they It is important here to define the tests used as they are particular to the paper, not part of a natural are particular to the paper, not part of a natural series and not obvious to the readerseries and not obvious to the reader
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Language Editing Services (LES)Language Editing Services (LES)
• Specialist scientific editing services are commercially available to polish the language in your manuscript prior to journal submission
• Rates start from $8 per page
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Technical detailsTechnical details(Journal Submission)(Journal Submission)
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Choose a journal appropriate to the breadth and importance of your work and take advice when unsure to avoid rejection and associated delay in publication
Choose the right journalChoose the right journal
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Choose the right journalChoose the right journal
Investigate all candidate journals to find out:Investigate all candidate journals to find out:
Aims and scopeAims and scope
Types of articlesTypes of articles
ReadershipReadership
Current hot topics (go through recent abstracts )Current hot topics (go through recent abstracts )
You can get help from your supervisor or colleagues. You can get help from your supervisor or colleagues.
Articles in your references will likely lead you to the Articles in your references will likely lead you to the right journal.right journal.
DO NOT gamble by scattering your manuscript to DO NOT gamble by scattering your manuscript to many journals. Only submit once!many journals. Only submit once!
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LayoutLayout
•Keep line spacing, font and font size consistent throughout – double-spaced 12-point Times New Roman is preferred
•Use consistent heading styles throughout and no more than three levels of heading
•Number the pages
•Number lines if journal requires – check the Guide for Authors
•Order and title sections as instructed in the Guide for Authors – Figure and Table sections are normally together following References
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LengthLength
“…25-30 pages is the ideal length for a submitted manuscript, including ESSENTIAL data only”
Julian Eastoe, Co-editor, Journal of Colloid and Interface Science
Consult the Guide for Authors for word and graphic limits
Letters or short communications have stricter limits on the length. For example, 3000 words with no more than five illustrations.
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AbbreviationsAbbreviations
• Define non-standard abbreviations on first use in both the abstract and the main text
• Check the Guide for Authors for a list of standard abbreviations that don’t need defining
• Don’t abbreviate terms used only once or twice in the entire manuscript – spell these out in full
• Acronyms: capitals not required in the definition unless a proper noun or start of a sentence
ubiquitin proteasome system (UPS) NOT
Ubiquitin Proteasome System (UPS)
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Cover letterCover letter
• This is your chance to speak to the editor directly
• Keep it brief, but convey the particular importance of your manuscript to the journal
• Suggest potential reviewers
This is your opportunity to convince the journal editor that they should publish your study, so it is worth investing time at this stage
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Cover letterCover letter
Include:
• Editor name – Address to journal editor
• First sentence – provide title, author list and journal name
• Briefly describe: • your research area and track record• the main findings of your research• the significance of your research
• Confirm the originality of the submission
• Confirm that there are no competing financial interests
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Revisions andRevisions and
Response to ReviewersResponse to Reviewers
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Why is revision important and Why is revision important and necessary?necessary?
Which procedure do you prefer?Which procedure do you prefer? Send out a sloppily prepared manuscriptSend out a sloppily prepared manuscript -> -> get get
rejected after rejected after 11--22 months months - - send out again only send out again only a few days later a few days later get rejected again…. get rejected again….
Take Take 11--22 months to prepare the manuscript months to prepare the manuscript get the first decision after get the first decision after 1-21-2 months months revise revise carefully withincarefully within timetime limitation….acceptedlimitation….accepted
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Revision before submissionRevision before submissionReasons for early rejection: Reasons for early rejection: Content (aims and scope)Content (aims and scope)
Paper is of limited interest or covers local issues only Paper is of limited interest or covers local issues only (sample type, geography, specific product, etc).(sample type, geography, specific product, etc).
Paper is a routine application of well-known methodsPaper is a routine application of well-known methods
Paper presents an incremental advance or is limited in Paper presents an incremental advance or is limited in scopescope
Novelty and significance are not immediately evident Novelty and significance are not immediately evident or sufficiently well-justifiedor sufficiently well-justified
Reasons for early rejection:Reasons for early rejection: PreparationPreparation
Failure to meet submission requirementsFailure to meet submission requirements
Unacceptably poor EnglishUnacceptably poor English
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Revision before submission can prevent early rejectionWhat can I do to ensure my paper is in the best
possible state prior to submission?
•Ask colleagues to take a look and be critical
•Check that everything meets the requirements set out in the Guide for Authors – again!
•Check that the scope of the paper is appropriate for the selected journal – change journal rather than submit inappropriately
Revision before submissionRevision before submission
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Revision before submission can prevent early rejectionWhat can I do to ensure my paper is in the best
possible state prior to submission?
•If necessary, get a colleague or approved editing service to improve the language and ensure that the manuscript possesses the three “C”s
•Ensure that the literature cited is balanced and that the aims and purpose of the study, and the significance of the results, are clear
•Use a spellchecker
Revision before submissionRevision before submission
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Revision after submissionRevision after submission(Post-referee revision)(Post-referee revision)
•Respond to all points; even if you disagree with a reviewer, provide a polite, scientifically solid rebuttal rather than ignore their comment
•Provide page and line numbers when referring to revisions made in the manuscript
•Perform additional calculations, computations, or experiments if required; these usually serve to make the final paper stronger
Carefully study the reviewers’ comments and prepare a detailed letter of response
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Revision after submissionRevision after submission
The reviewer is clearly ignorant of the work of Bonifaci et al. (2008) showing that the electric field strength in the ionization zone of the burned corona is less than the space charge free field before the corona onset….
Thank you for your comment. However, we feel that the assumption in our model is supported by recent work by Bonifaci et al. (2008), who showed that the electric field strength in the ionization zone of the burned corona is less than the space charge free field before the corona onset
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Revision after submissionRevision after submission
•State specifically what changes you have made to address the reviewers’ comments, mentioning the page and line numbers where changes have been made
•Avoid repeating the same response over and over; if a similar comment is made by multiple people explain your position once and refer back to your earlier response in responses to other reviewers or the editor
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Revision after submissionRevision after submission
Reviewer’s Comments: It would also be good to acknowledge that geographic routing as you describe it is not a complete routing solution for wireless networks, except for applications that address a region rather than a particular node. Routing between nodes requires further machinery, which detracts from the benefits of geographic routing, and which I don't believe you have made practical. Author’s reply: We agree and will add an appropriate caveat. Note that for data-centric storage (name-based exact-match and range queries for sensed events), the storage and query processing mechanisms "natively" address packets geographically – without a "node-to-location" database.
Clearly differentiate responses from reviewers’ comments by using a different font style
Dr. Ramesh Govindan, Professor, Computer Science Department, University of Southern California
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RejectionRejection
•Try to understand why the paper has been rejected
•Evaluate honestly – will your paper meet the journal’s requirements with the addition of more data or is another journal more appropriate?
•Don’t resubmit elsewhere without significant revisions addressing the reasons for rejection and checking the new Guide for Authors
Don’t take it personally!
It is not the end of the world!!
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Ethical IssuesEthical Issues
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Unethical behavior includes:
•Multiple submissions
•Redundant publications
•Plagiarism
•Data fabrication and falsification
•Improper use of human subjects and animals in research
•Improper author contribution
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Multiple submissions save your time but waste editors’
The editorial process of your manuscripts will be completely stopped if the duplicated submissions are discovered
Multiple submissionsMultiple submissions
“ it is considered to be unethical… We have thrown out a paper when an author was caught doing this. I believe that the other journal did the same thing.” — James C. Hower, Editor, the international Journal of Coal Geology
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Competing journals constantly exchange information on suspicious papers
You should not send your manuscripts to a second journal UNTIL you receive the final decision from the first journal
Multiple submissionsMultiple submissions
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Redundant publicationRedundant publication
•Published studies do not need to be repeated unless further confirmation is required
An author should not submit for consideration in another journal a previously published paper
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Redundant publicationRedundant publication
•Re-publication of a paper in another language is acceptable, provided that there is full and prominent disclosure of its original source at the time of submission
•At the time of submission, authors should disclose details of related papers, even if in a different language, and similar papers in press
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PlagiarismPlagiarism
“Plagiarism is the appropriation of another person’s ideas, processes, results, or words without giving appropriate credit, including those obtained through confidential review of others’ research proposals and manuscripts”
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PlagiarismPlagiarism
Plagiarism is a serious offence that could lead to paper rejection, academic charges and termination of employment. It will seriously affect your scientific reputation
DON’T DO IT!
Unacceptable paraphrasing, even with correct citation, is considered plagiarism
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ParaphrasingParaphrasing
• Original (Gratz, 1982):
Bilateral vagotomy resulted in an increase in tidal volume but a depression in respiratory frequency such that total ventilation did not change.
• Restatement 1:
Gratz (1982) showed that bilateral vagotomy resulted in an increase in tidal volume but a depression in respiratory frequency such that total ventilation did not change.
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ParaphrasingParaphrasing• Original (Buchanan, 1996):
What makes intentionally killing a human being a moral wrong for which the killer is to be condemned is that the killer did this morally bad thing not inadvertently or even negligently, but with a conscious purpose – with eyes open and a will directed toward that very object.
• Restatement 2:
Buchanan (1996) states that we condemn a person who intentionally kills a human being because he did a "morally bad thing" not through negligence or accident but with open eyes and a direct will to take that life.
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Data fabrication and falsificationData fabrication and falsification
• Fabrication is making up data or results, and recording or reporting them
• Falsification is manipulating research materials, equipment, processes; or changing / omitting data or results such that the research is not accurately represented in the research record
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Unethical researchUnethical research
• Experiments on human subjects or animals should follow related ethical standards, namely, the Helsinki Declaration of 1975, as revised in 2000 (5)
• If doubt exists concerning the compliance of the research with the Helsinki Declaration, authors must explain the rationale for their approach and demonstrate approval from the institutional review body
Unethical behavior “ can earn rejection and even a ban from publishing in the journal” — Terry M Phillips, Editor, Journal of Chromatography B
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Improper author contributionImproper author contribution
Authorship credit should be based on
1.Substantial contributions to conception and design, or acquisition of data, or analysis and interpretation of data
2.Drafting the article or revising it critically for important intellectual content
3.Final approval of the version to be published
Authors should meet conditions 1, 2, and 3
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Conclusion: Getting AcceptedConclusion: Getting Accepted
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What gets you accepted?What gets you accepted?
AAttention to details
CCheck and double check your work
CConsider the reviews
EEnglish must be as good as possible
PPresentation is important
TTake your time with revision
AAcknowledge those who have helped you
NNew, original and previously unpublished
CCritically evaluate your own manuscript
EEthical rules must be obeyed
– Nigel John Cook, Editor-in-Chief, Ore Geology Reviews
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Language Editing ServicesLanguage Editing Services
Recommended companies include:
- Edanz Editing- Liwen Bianji- International Science
Editing- Asia Science Editing- SPI Publisher Services - Diacritech Language
Editing Service
Use of an English-language editing service listed here is not mandatory, and will not guarantee acceptance for publication in journals