iii. linkage a. ‘complete’ linkage b. ‘incomplete’ linkage

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III. Linkage A. ‘Complete’ Linkage B. ‘Incomplete’ Linkage C. Three-point Mapping - combine complementary sets Three Point Test Cross AaBbCc x aabbcc Phenotypic Ratio: ABC = 25 ABc = 3 Abc = 42 AbC = 85 aBC = 79 aBc = 39 abc = 27 abC = 5 ABC = 25 abc = 27 52 ABc = 3 abC = 5 = 8 Abc = 42 aBC = 39 81 AbC = 85 aBc = 79

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III. Linkage A. ‘Complete’ Linkage B. ‘Incomplete’ Linkage OK… so we conclude the genes are linked… NOW WHAT?. AaBb x aabb. III. Linkage A. ‘Complete’ Linkage B. ‘Incomplete’ Linkage OK… so we conclude the genes are linked… NOW WHAT? - PowerPoint PPT Presentation

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Page 1: III. Linkage    A. ‘Complete’ Linkage    B. ‘Incomplete’ Linkage

III. Linkage

A. ‘Complete’ Linkage B. ‘Incomplete’ Linkage C. Three-point Mapping

- combine complementary sets

Three Point Test Cross

AaBbCc x aabbcc

Phenotypic Ratio:

ABC = 25ABc = 3Abc = 42AbC = 85aBC = 79aBc = 39abc = 27abC = 5

ABC = 25abc = 27 52ABc = 3abC = 5 = 8

Abc = 42aBC = 39 81

AbC = 85aBc = 79 164

Page 2: III. Linkage    A. ‘Complete’ Linkage    B. ‘Incomplete’ Linkage

Copyright © 2010 Pearson Education, Inc.

Bacterial Genetics

Page 3: III. Linkage    A. ‘Complete’ Linkage    B. ‘Incomplete’ Linkage

Copyright © 2010 Pearson Education, Inc.

Bacterial Genetics

I.Overview - Domains of Life

Page 4: III. Linkage    A. ‘Complete’ Linkage    B. ‘Incomplete’ Linkage

Copyright © 2010 Pearson Education, Inc.

Bacterial Genetics

I.Overview - Domains of Life

Page 5: III. Linkage    A. ‘Complete’ Linkage    B. ‘Incomplete’ Linkage

Bacterial Genetics

I.Overview - Domains of LifeII. Prokaryotic Reproduction

A. fission

Page 6: III. Linkage    A. ‘Complete’ Linkage    B. ‘Incomplete’ Linkage

Bacterial Genetics

I.Overview - Domains of LifeII. Prokaryotic Reproduction

A. fission

= 10 billion cells

Page 7: III. Linkage    A. ‘Complete’ Linkage    B. ‘Incomplete’ Linkage

Bacterial Genetics

I.Overview - Domains of LifeII. Prokaryotic Reproduction

A. fissionThe rapid production of new

organisms creates genetic diversity by mutation, alone; even though the rates of mutation are low for any given gene.

Consider an average gene mutation rate = 1 x 10-5 (meaning a new mutation is produced in every 100,000 copies… or descendants).

In 10 billion (1010) descendants, there would be 105 different mutations at this one gene.

This is happening independently across 4000 (4 x 103) genes in the E. coli genome.

So, in that population of 10 billion cells, there might be as many as 4 x 108 different genomes. About 1/3 will be “silent” (not change the AA), and many will result in a lethal mutation so they won’t occur. But still….. VARIATION.

Page 8: III. Linkage    A. ‘Complete’ Linkage    B. ‘Incomplete’ Linkage

Bacterial Genetics

I.Overview - Domains of LifeII. Prokaryotic Reproduction

A. fission B. “sex” – genetic recombination

1. conjugation

Page 9: III. Linkage    A. ‘Complete’ Linkage    B. ‘Incomplete’ Linkage

Copyright © 2010 Pearson Education, Inc.

Bacterial Genetics

I.Overview - Domains of LifeII. Prokaryotic Reproduction

A. fission B. “sex” – genetic recombination

1. conjugation

Page 10: III. Linkage    A. ‘Complete’ Linkage    B. ‘Incomplete’ Linkage

Lederberg and Tatum – 1946

- certain strains of bacteria are able to donate genes to other strains – they have a “fertility factor” (F+). Other strains lack this factor (F-).

Page 11: III. Linkage    A. ‘Complete’ Linkage    B. ‘Incomplete’ Linkage

Copyright © 2010 Pearson Education, Inc.

Bacterial Genetics

I.Overview - Domains of LifeII. Prokaryotic Reproduction

A. fission B. “sex” – genetic recombination

1. conjugation

Davis demonstrated that cell-cell contact was required…

Page 12: III. Linkage    A. ‘Complete’ Linkage    B. ‘Incomplete’ Linkage

Copyright © 2010 Pearson Education, Inc.

Bacterial Genetics

I.Overview - Domains of LifeII. Prokaryotic Reproduction

A. fission B. “sex” – genetic recombination

1. conjugation

F -duction

Page 13: III. Linkage    A. ‘Complete’ Linkage    B. ‘Incomplete’ Linkage

Copyright © 2010 Pearson Education, Inc.

Figure 8-6And Cavalli Sforza isolated a strain that would cause genetic change at a very high rate: Hfr (High frequency recombination). He recognized that the acquisition of traits was related to the duration of the conjugation event.

Page 14: III. Linkage    A. ‘Complete’ Linkage    B. ‘Incomplete’ Linkage

Copyright © 2010 Pearson Education, Inc.

He hypothesized that the time between transfer to the recipient cell was related to the distance between genes.

As such, if he interrupted mating at specific intervals, he could use time between trait acquisition as an index of distance between genes.

Page 15: III. Linkage    A. ‘Complete’ Linkage    B. ‘Incomplete’ Linkage

Copyright © 2010 Pearson Education, Inc.

Bacterial Genetics

I.Overview - Domains of LifeII. Prokaryotic Reproduction

A. fission B. “sex” – genetic recombination

1. conjugation

He isolated different strains that transferred genes in different order, suggesting that the transfer process could begin at different places.

Page 16: III. Linkage    A. ‘Complete’ Linkage    B. ‘Incomplete’ Linkage

Copyright © 2010 Pearson Education, Inc.

Figure 8-8bHe isolated different strains that transferred genes in different order, suggesting that the transfer process could begin at different places.

Page 17: III. Linkage    A. ‘Complete’ Linkage    B. ‘Incomplete’ Linkage

Copyright © 2010 Pearson Education, Inc.

Figure 8-9 part 1

Page 18: III. Linkage    A. ‘Complete’ Linkage    B. ‘Incomplete’ Linkage

Copyright © 2010 Pearson Education, Inc.

Figure 8-9 part 2

Page 19: III. Linkage    A. ‘Complete’ Linkage    B. ‘Incomplete’ Linkage

Copyright © 2010 Pearson Education, Inc.

Figure 8-9 part 3

Page 20: III. Linkage    A. ‘Complete’ Linkage    B. ‘Incomplete’ Linkage

Copyright © 2010 Pearson Education, Inc.

Figure 8-9 part 4

Page 21: III. Linkage    A. ‘Complete’ Linkage    B. ‘Incomplete’ Linkage

Copyright © 2010 Pearson Education, Inc.

Figure 8-9 part 5

Page 22: III. Linkage    A. ‘Complete’ Linkage    B. ‘Incomplete’ Linkage

Copyright © 2010 Pearson Education, Inc.

An integrated Hfr plasmid can revert to a free F+ plasmid, and take chromosomal genes along, too.

Page 23: III. Linkage    A. ‘Complete’ Linkage    B. ‘Incomplete’ Linkage

Copyright © 2010 Pearson Education, Inc.

An integrated Hfr plasmid can revert to a free F+ plasmid, and take chromosomal genes along, too.

It is now an F’ plasmid.

Conjugation can now occur.

Page 24: III. Linkage    A. ‘Complete’ Linkage    B. ‘Incomplete’ Linkage

Copyright © 2010 Pearson Education, Inc.

Figure 8-10 part 4

Page 25: III. Linkage    A. ‘Complete’ Linkage    B. ‘Incomplete’ Linkage

Copyright © 2010 Pearson Education, Inc.

Figure 8-10 part 5

Page 27: III. Linkage    A. ‘Complete’ Linkage    B. ‘Incomplete’ Linkage

Bacterial Genetics

I.Overview - Domains of LifeII. Prokaryotic Reproduction

A. fission B. “sex” – genetic recombination

1. conjugation 2. transformation – absorption of DNA from the environment.

Page 28: III. Linkage    A. ‘Complete’ Linkage    B. ‘Incomplete’ Linkage

Copyright © 2010 Pearson Education, Inc.

Figure 8-12 part 1

Page 29: III. Linkage    A. ‘Complete’ Linkage    B. ‘Incomplete’ Linkage

Copyright © 2010 Pearson Education, Inc.

Figure 8-12 part 2

Page 30: III. Linkage    A. ‘Complete’ Linkage    B. ‘Incomplete’ Linkage

Copyright © 2010 Pearson Education, Inc.

Figure 8-12 part 3

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Copyright © 2010 Pearson Education, Inc.

Figure 8-12 part 4

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Copyright © 2010 Pearson Education, Inc.

Figure 8-12 part 5

Page 33: III. Linkage    A. ‘Complete’ Linkage    B. ‘Incomplete’ Linkage

Bacterial Genetics

I.Overview - Domains of LifeII. Prokaryotic Reproduction

A. fission B. “sex” – genetic recombination

1. conjugation 2. transformation – absorption of DNA from the environment. 3. viral transduction

Page 34: III. Linkage    A. ‘Complete’ Linkage    B. ‘Incomplete’ Linkage

Copyright © 2010 Pearson Education, Inc.

Figure 8-14

Page 35: III. Linkage    A. ‘Complete’ Linkage    B. ‘Incomplete’ Linkage

Copyright © 2010 Pearson Education, Inc.

Figure 8-17

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Bacterial Genetics

I.Overview - Domains of LifeII. Prokaryotic ReproductionIII.The Use of Bacteria in Recombinant DNA Technology

Page 37: III. Linkage    A. ‘Complete’ Linkage    B. ‘Incomplete’ Linkage

Bacterial Genetics

I.Overview - Domains of LifeII. Prokaryotic ReproductionIII.The Use of Bacteria in Recombinant DNA Technology

Plasmid ‘vector’ with ampicillin-resistance gene

Page 38: III. Linkage    A. ‘Complete’ Linkage    B. ‘Incomplete’ Linkage

Bacterial Genetics

I.Overview - Domains of LifeII. Prokaryotic ReproductionIII.The Use of Bacteria in Recombinant DNA Technology

Transformation: absorption of plasmids

Plasmid ‘vector’ with ampicillin-resistance gene

Page 39: III. Linkage    A. ‘Complete’ Linkage    B. ‘Incomplete’ Linkage

Bacterial Genetics

I.Overview - Domains of LifeII. Prokaryotic ReproductionIII.The Use of Bacteria in Recombinant DNA Technology

Transformation: absorption of plasmids

Plasmid ‘vector’ with ampicillin-resistance gene

Grow on selective media with ampicillin; only bacteria that have absorbed plasmids will grow.

Page 40: III. Linkage    A. ‘Complete’ Linkage    B. ‘Incomplete’ Linkage

Bacterial Genetics

I.Overview - Domains of LifeII. Prokaryotic ReproductionIII.The Use of Bacteria in Recombinant DNA Technology

Transformation: absorption of plasmids

Plasmid ‘vector’ with ampicillin-resistance gene

Grow on selective media with ampicillin; only bacteria that have absorbed plasmids will grow.

Fission produces millions of cells in a day that have each plasmid – colonies.

Page 41: III. Linkage    A. ‘Complete’ Linkage    B. ‘Incomplete’ Linkage

Bacterial Genetics

I.Overview - Domains of LifeII. Prokaryotic ReproductionIII.The Use of Bacteria in Recombinant DNA Technology

Show the location of all ampicillin-resistant colonies

Transfer to a piece of filter paper with a radiolabeled probe specific to the gene in question

Take an x-ray to identify colonies that have absorbed the plasmid with the gene of interest. Culture the bacteria, cloning the gene for study.