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IMAGING MOUSE EMBRYOS AND ORGANS OF ADULT MICE USING SINGLE PLANE ILLUMINATION MICROSCOPY (SPIM) Klaus Greger 1 , Emerald Perlas 2 , Walter Witke 2 , Ernst H.K. Stelzer 1 1 European Molecular Biology Laboratory, Meyerhofstr. 1, 69121 Heidelberg, Germany 2 European Molecular Biology Laboratory, Adriano Buzzati-Traverso Campus, Via Ramarini 32, 00016 Monterotondo, Italy E-mail: [email protected] KEY WORDS: fluorescence microscopy, optical sectioning Imaging large samples such as mouse embryos and organs of adult mice in three dimensions is of great interest, since the mouse model is widely used in medical research. Single Plane Illumination Microscopy (SPIM) [1] provides images with good three dimensional resolution inside the sample, optical sectioning capability, and very low background, even for samples in the centimetre range. Penetration was increased by clearing the samples with Murray Clear, a mixture of benzyl benzoate and benzyl alcohol. In comparison to MRI, which also allows very good penetration, our method provides better resolution. As it is a fluorescence based method, a wide variety of applications exists. We also compare our results to OPT [2]. Figure 1: Optical slices of a mouse brain (day four postnatal). The images show part of the cerebellum and the central brain. (a) – (d): The image quality in different depths does not decrease. Corresponding depths inside the sample are: (a) 62μm, (b) 1.24mm, (c) 2.27mm, (d) 3.73mm. (e) Lateral-axial plane out of the same stack along the detection axis, demonstrating the isotropic resolution. Directions of illumination and detection are indicated by the arrows. λ ill : 488 nm, detection filter: Chroma HQ 500 LP, detection lens: Carl Zeiss Fluar 2.5x/ 0.12 [1] K. Greger, J. Swoger, and E. H. K. Stelzer, “Basic building units and properties of a fluorescence single plane illumination microscope,” Review of Scientific Instruments, 78, 1 (2007). [2] J. Sharpe, U. Ahlgren, P. Perry, B. Hill, A. Ross, J. Hecksher-Sørensen, R. Baldock, and D. Davidson, “Optical Projection Tomography as a Tool for 3D Microscopy and Gene Expression Studies,” Science. 296, 541-545 (2002).

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IMAGING MOUSE EMBRYOS AND ORGANS OF ADULT MICE USING SINGLE PLANE ILLUMINATION MICROSCOPY (SPIM)

Klaus Greger1, Emerald Perlas2, Walter Witke2, Ernst H.K. Stelzer1

1European Molecular Biology Laboratory, Meyerhofstr. 1, 69121 Heidelberg, Germany 2European Molecular Biology Laboratory, Adriano Buzzati-Traverso Campus, Via

Ramarini 32, 00016 Monterotondo, Italy E-mail: [email protected]

KEY WORDS: fluorescence microscopy, optical sectioning Imaging large samples such as mouse embryos and organs of adult mice in three dimensions is of great interest, since the mouse model is widely used in medical research. Single Plane Illumination Microscopy (SPIM) [1] provides images with good three dimensional resolution inside the sample, optical sectioning capability, and very low background, even for samples in the centimetre range. Penetration was increased by clearing the samples with Murray Clear, a mixture of benzyl benzoate and benzyl alcohol. In comparison to MRI, which also allows very good penetration, our method provides better resolution. As it is a fluorescence based method, a wide variety of applications exists. We also compare our results to OPT [2].

Figure 1: Optical slices of a mouse brain (day four postnatal). The images show part of the cerebellum and the central brain. (a) – (d): The image quality in different depths does not decrease. Corresponding depths inside the sample are: (a) 62µm, (b) 1.24mm, (c) 2.27mm, (d) 3.73mm. (e) Lateral-axial plane out of the same stack along the detection axis, demonstrating the isotropic resolution. Directions of illumination and detection are indicated by the arrows. λill: 488 nm, detection filter: Chroma HQ 500 LP, detection lens: Carl Zeiss Fluar 2.5x/ 0.12 [1] K. Greger, J. Swoger, and E. H. K. Stelzer, “Basic building units and properties of a fluorescence single plane illumination microscope,” Review of Scientific Instruments, 78, 1 (2007). [2] J. Sharpe, U. Ahlgren, P. Perry, B. Hill, A. Ross, J. Hecksher-Sørensen, R. Baldock, and D. Davidson, “Optical Projection Tomography as a Tool for 3D Microscopy and Gene Expression Studies,” Science. 296, 541-545 (2002).