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Information Management The old fashioned way! Gary R. Skuse, Ph.D. Director of Bioinformatics [email protected]

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Page 1: Information Management The old fashioned way! Gary R. Skuse, Ph.D. Director of Bioinformatics grssbi@rit.edu

Information Management

The old fashioned way!

Gary R. Skuse, Ph.D.Director of Bioinformatics

[email protected]

Page 2: Information Management The old fashioned way! Gary R. Skuse, Ph.D. Director of Bioinformatics grssbi@rit.edu

Essential Cell Biology : An Introduction to the

Molecular Biology of the Cell

by Bruce Alberts, Dennis Bray, Alexander Johnson, Julian Lewis, Peter Walter, Keith Roberts, Martin Raff

Garland Pub; ISBN: 0815320450

All Illustrations taken from:

Page 3: Information Management The old fashioned way! Gary R. Skuse, Ph.D. Director of Bioinformatics grssbi@rit.edu

Molecular Biology is about Information

Alice

Page 4: Information Management The old fashioned way! Gary R. Skuse, Ph.D. Director of Bioinformatics grssbi@rit.edu

Information Flow within Cells

Page 5: Information Management The old fashioned way! Gary R. Skuse, Ph.D. Director of Bioinformatics grssbi@rit.edu

Spatial Flow of Information

Page 6: Information Management The old fashioned way! Gary R. Skuse, Ph.D. Director of Bioinformatics grssbi@rit.edu

DNA is Organized into Chromosomes

Page 7: Information Management The old fashioned way! Gary R. Skuse, Ph.D. Director of Bioinformatics grssbi@rit.edu

Painted Chromosomes

Page 8: Information Management The old fashioned way! Gary R. Skuse, Ph.D. Director of Bioinformatics grssbi@rit.edu

Electron Micrographs of Chromosomes

Page 9: Information Management The old fashioned way! Gary R. Skuse, Ph.D. Director of Bioinformatics grssbi@rit.edu

Chromosomes are Comprised of DNA

Packaged with Proteins

Page 10: Information Management The old fashioned way! Gary R. Skuse, Ph.D. Director of Bioinformatics grssbi@rit.edu

Chromosomes Contain Large Quantities of DNA

Page 11: Information Management The old fashioned way! Gary R. Skuse, Ph.D. Director of Bioinformatics grssbi@rit.edu

DNA can Replicate Itself

Page 12: Information Management The old fashioned way! Gary R. Skuse, Ph.D. Director of Bioinformatics grssbi@rit.edu

DNA Replication is Uncommonly Accurate

Page 13: Information Management The old fashioned way! Gary R. Skuse, Ph.D. Director of Bioinformatics grssbi@rit.edu

Information in DNA is Transcribed into RNA

Page 14: Information Management The old fashioned way! Gary R. Skuse, Ph.D. Director of Bioinformatics grssbi@rit.edu

There are Different Types of RNA

Page 15: Information Management The old fashioned way! Gary R. Skuse, Ph.D. Director of Bioinformatics grssbi@rit.edu

Gene Organization in Prokaryotes

Page 16: Information Management The old fashioned way! Gary R. Skuse, Ph.D. Director of Bioinformatics grssbi@rit.edu

Translation of Prokaryotic and Eukaryotic RNA

Page 17: Information Management The old fashioned way! Gary R. Skuse, Ph.D. Director of Bioinformatics grssbi@rit.edu

DNA Serves as a Template for Transcription

Page 18: Information Management The old fashioned way! Gary R. Skuse, Ph.D. Director of Bioinformatics grssbi@rit.edu

Eukaryotic Genes are Not Contiguous

Page 19: Information Management The old fashioned way! Gary R. Skuse, Ph.D. Director of Bioinformatics grssbi@rit.edu

RNA Splicing is Sequence Directed

Page 20: Information Management The old fashioned way! Gary R. Skuse, Ph.D. Director of Bioinformatics grssbi@rit.edu

Alternative Splicing Leads to Multiple Proteins from One Gene

Page 21: Information Management The old fashioned way! Gary R. Skuse, Ph.D. Director of Bioinformatics grssbi@rit.edu

RNA Processing, Like All Things Biological, is

Complex

Page 22: Information Management The old fashioned way! Gary R. Skuse, Ph.D. Director of Bioinformatics grssbi@rit.edu

Gene Expression is Regulated Differently for Different Genes

Page 23: Information Management The old fashioned way! Gary R. Skuse, Ph.D. Director of Bioinformatics grssbi@rit.edu

RNA is Translated into Protein

Page 24: Information Management The old fashioned way! Gary R. Skuse, Ph.D. Director of Bioinformatics grssbi@rit.edu
Page 25: Information Management The old fashioned way! Gary R. Skuse, Ph.D. Director of Bioinformatics grssbi@rit.edu

The Code Must be Parsed Accurately

Page 26: Information Management The old fashioned way! Gary R. Skuse, Ph.D. Director of Bioinformatics grssbi@rit.edu

Linear Strings of Amino Acids Interact

Page 27: Information Management The old fashioned way! Gary R. Skuse, Ph.D. Director of Bioinformatics grssbi@rit.edu

Proteins Fold to Form 3-D Structures

Page 28: Information Management The old fashioned way! Gary R. Skuse, Ph.D. Director of Bioinformatics grssbi@rit.edu

We can Depict Protein Structures in

Many Ways

Page 29: Information Management The old fashioned way! Gary R. Skuse, Ph.D. Director of Bioinformatics grssbi@rit.edu

We can Depict Protein Structures in

Many Ways

Page 30: Information Management The old fashioned way! Gary R. Skuse, Ph.D. Director of Bioinformatics grssbi@rit.edu

We can Depict Protein Structures in

Many Ways

Page 31: Information Management The old fashioned way! Gary R. Skuse, Ph.D. Director of Bioinformatics grssbi@rit.edu

We can Depict Protein Structures in

Many Ways

Page 32: Information Management The old fashioned way! Gary R. Skuse, Ph.D. Director of Bioinformatics grssbi@rit.edu

Protein Shape Leads to Function

Page 33: Information Management The old fashioned way! Gary R. Skuse, Ph.D. Director of Bioinformatics grssbi@rit.edu

Protein Shape Leads to Function

Page 34: Information Management The old fashioned way! Gary R. Skuse, Ph.D. Director of Bioinformatics grssbi@rit.edu

Proteins may Change Shape as they Function

Page 35: Information Management The old fashioned way! Gary R. Skuse, Ph.D. Director of Bioinformatics grssbi@rit.edu

Genes are Somewhat Modular

Page 36: Information Management The old fashioned way! Gary R. Skuse, Ph.D. Director of Bioinformatics grssbi@rit.edu

Protein Structure Reflects that Modularity

Page 37: Information Management The old fashioned way! Gary R. Skuse, Ph.D. Director of Bioinformatics grssbi@rit.edu

Preparation of DNA for Cloning

Page 38: Information Management The old fashioned way! Gary R. Skuse, Ph.D. Director of Bioinformatics grssbi@rit.edu

Cloning of DNA

Page 39: Information Management The old fashioned way! Gary R. Skuse, Ph.D. Director of Bioinformatics grssbi@rit.edu

The PCR