integration architecture
DESCRIPTION
Integration architecture. Queryable sources that generate XML Distributed queries over sources Query Manager to manage queries Saved queries as sources that can also be queried Leads to potential for query networks. vSPARQL Service. RDF Store. vSPARQL Service. RDF Store. vSPARQL - PowerPoint PPT PresentationTRANSCRIPT
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Integration architecture
• Queryable sources that generate XML• Distributed queries over sources• Query Manager to manage queries• Saved queries as sources that can also be
queried• Leads to potential for query networks
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vSPARQLService
RDF Store
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vSPARQLService
RDF Store
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vSPARQLService
RDF Store
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QM DB
vSPARQLService
QM Server
QM Client
RDF Store
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QM DB
vSPARQLService
QM Server
QM Client
RDF Store
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XML
XML
BIRN fMRI Study
Label using Talairach Demon
Extract centers of activation
BIRN fMRI Study
Schizophrenics vs Healthy Controls
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XML
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QM DB
vSPARQLService
QM Server
RDF/OWL
XML
QM Client
RDF Store
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QM DB
vSPARQLService
DXQueryService
QM Server
RDF/OWL
XML
QM Client
RDF Store
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QM DB
vSPARQLService
DXQueryService
QM Server
RDF/OWL
QM Client
RDF Store
XML
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QM DB
vSPARQLService
DXQueryService
QM Server
RDF/OWL
QEService
QM Client
RDF Store
XML
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QM DB
vSPARQLService
DXQueryService
QM Server
RDF/OWL
QEService
QM Client
RDF Store
XML
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QM DB
vSPARQLService
DXQueryService
QM Server
XML RDF/OWL
QEService
QM Client
RDF Store
XML
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Region Filtered Healthy(Red)
Schizo-phrenic(Yellow)
Dorso_lateral prefrontalcortex
55 25 30
Brodmann area 6 213 107 106
Frontal lobe 575 288 287
N=1741
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QM DB
vSPARQLService
DXQueryService
QM Server
QEService
QM Client
RDF Store
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QM DB
RemoteServices
vSPARQLService
DXQueryService
OtherServices
QM Server
Other Client
XML RDF/OWL
XML
QEService
Other Client
QM Client
RDF Store
RDF/OWL
RemoteServices
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RemoteServices
vSPARQLService
DXQueryService
OtherServices
Other Client
XML RDF/OWL
XML
Other Client
QM Client
RDF Store
RDF/OWL
RemoteServices
Query ManagerCore
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RemoteServices
vSPARQLService
DXQueryService
OtherServices
Other Client
XML RDF/OWL
XML
Other Client
QM Client
RDF Store
RDF/OWL
RemoteServices
Query ManagerCore
Query Manager Core with Plugins
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RemoteServices
Other Client Other
Client
RemoteServices
Query Manager
RDF/OWL
RDF/OWL
XML
XML
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Query Manager
RDF/OWL
RDF/OWL
XML
XML
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Query Manager
BIRN fMRI and FMA
BIRN fMRI FMA
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Query Manager
BIRN fMRI, VBM and FMA
BIRN fMRI
FMA
VBM
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Query Manager
Electronic Data Capture and Freezer Management
Freezer Management
EDC
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Query Manager
Biorepositories
Biorepository
Biorepository
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Query Manager
Human Studies Database
Clinical Trials Metadata
Clinical Trials Metadata
Ontology of Clinical Research
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Query Manager
Ontology Views
Ontology
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Query Manager
Summary
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Issues
• Response time• Reliability• Security• Discoverability• Usability• Integration with other systems and methods
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Query Manager
Query Manager Future Work
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Query Manager
Query Manager
Query Manager
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BIRN fMRI
FMA
Brain Imaging View
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EDC
Clinical View
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Clinical
Imaging
Clinical/Imaging View
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Genomic View
Gene
Protein
Others….
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Clinical/Imaging Genomic
Translational View
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Query Web
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Query Web
Translational Medicine
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Web
Semantic Web
Internet
Query Web
A Network-centric view of information systems
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Bin Zhang
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A convergence?
• Biology as an information science• Information science as biology• Networks as the link
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Credits
• Todd Detwiler• Onard Mejino• Joshua Franklin• Ron Shaker
• Xenia Hertzenberg• Nolan Nichols• Marianne Shaw• Wayne Warren
• Linda Shapiro• Dan Suciu• Cornelius Rosse
Funding: NLM, NIMH, NHLBI